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"definition": [- "An alias is an alternative name for an entity. The use of an alias is mostly secondary, whereas instances of the \"Name\" class should be used to denote primary names.\n\nEncodes for the \"Alias\" attribute in GFF3 and GVF."
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{- "prefLabel": "Allele Count",
- "synonym": [ ],
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"definition": [- "Count of a specific allele in genotypes.\n\nEncodes for \"AC\" additional information in VCF files."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#AlleleCount",
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{- "prefLabel": "Allele Frequency",
- "synonym": [ ],
-
"definition": [- "Proportion of a particular gene allele in a gene pool or genotype.\n\nEncodes for \"AF\" additional information in VCF files."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#AlleleFrequency",
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{- "prefLabel": "Amino Acid",
- "synonym": [ ],
-
"definition": [- "\"Amino Acid\" encodes for the \"Variant_aa\" and \"Reference_aa\" attributes in GVF files. Linking an \"Amino Acid\" instance to a \"Reference Sequence\" or \"Sequence Variant\" instance denotes the genomic context of the amino acid."
],- "obsolete": false,
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- "@type": "http://www.w3.org/2002/07/owl#Class",
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- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AminoAcid/parents",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
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}
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{- "prefLabel": "Ancestral Sequence",
- "synonym": [ ],
-
"definition": [- "Denotes an ancestral allele of a feature.\n\nMay be used to denote the \"ancestral allele\" (\"AA\" additional information) of VCF formatted files."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#AncestralSequence",
- "@type": "http://www.w3.org/2002/07/owl#Class",
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AncestralSequence",
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- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AncestralSequence/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AncestralSequence/descendants",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
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- "children": "http://www.w3.org/2002/07/owl#Class",
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- "instances": "http://data.bioontology.org/metadata/Instance",
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- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
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{- "prefLabel": "Average Coverage",
- "synonym": [ ],
-
"definition": [- "Average coverage depth for a genomic locus (a region or single base pair), i.e. the average number of reads representing a given nucleotide in the reconstructed sequence.\n\nCaptures the \"technology-platform\" structured pragma in GVF files (\"Average_coverage\" tag)."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#AverageCoverage",
- "@type": "http://www.w3.org/2002/07/owl#Class",
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AverageCoverage",
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- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AverageCoverage/descendants",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
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- "notes": "http://data.bioontology.org/metadata/Note",
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}
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{- "prefLabel": "Base Quality",
- "synonym": [ ],
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"definition": [- "Root mean square base quality.\n\nAccounts for \"BQ\" additional information in VCF files."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#BaseQuality",
- "@type": "http://www.w3.org/2002/07/owl#Class",
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23BaseQuality",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
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- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
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{- "prefLabel": "Biological Entity",
- "synonym": [ ],
-
"definition": [- "A biological entity an entity that contains genomic material or utilizes genomic material during its existance. Genomic material itself is represented as subclasses of \"Chemical Entity\"."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#BiologicalEntity",
- "@type": "http://www.w3.org/2002/07/owl#Class",
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23BiologicalEntity",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
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- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23BiologicalEntity/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23BiologicalEntity/ancestors",
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- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23BiologicalEntity/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23BiologicalEntity/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23BiologicalEntity/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23BiologicalEntity",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Breakpoint",
- "synonym": [ ],
-
"definition": [- "A breakpoint describes the source or destination of a zero-length sequence alteration. These alterations are typically insertions, deletions or translocations according to the GVF specification (see \"Breakpoint_detail\" in http://sequenceontology.org/resources/gvf.html). Breakpoint coordinates should be provided using classes of the Feature Annotation Location Description Ontology.\n\nThe class encodes for the \"Breakpoint_detail\" and \"Breakpoint_range\" attributes in GVF."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#Breakpoint",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Breakpoint",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Breakpoint/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Breakpoint/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Breakpoint/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Breakpoint/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Breakpoint/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Breakpoint/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Breakpoint/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Breakpoint/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Breakpoint",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Catalog",
- "synonym": [ ],
-
"definition": [- "A catalog is a specialization of a \"Collection\", where all of its contents are of the same type. The requirement of same type cannot be enforced formally via this ontology; data providers need to verify this condition manually or programmatically, or alternatively, use the more generic \"Collection\" class instead."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#Catalog",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Catalog",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Catalog/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Catalog/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Catalog/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Catalog/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Catalog/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Catalog/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Catalog/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Catalog/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Catalog",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Cell",
- "synonym": [ ],
-
"definition": [- "A cell is a biological unit that in itself forms a living organism or is part of a larger organism that is composed of many other cells. The subclasses \"Germline Cell\" and \"Somatic Cell\" can be used to denote the biological material that was used in an experiment."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#Cell",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Cell",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Cell/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Cell/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Cell/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Cell/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Cell/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Cell/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Cell/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Cell/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Cell",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Chemical Entity",
- "synonym": [ ],
-
"definition": [- "A chemical entity is an entity related to biochemistry. This class is typically not instantiated, but instead, its subclasses \"Amino Acid\", \"Chromosome\", \"Peptide Sequence\", etc., are used to represent specific chemical entities."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#ChemicalEntity",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ChemicalEntity",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ChemicalEntity/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ChemicalEntity/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ChemicalEntity/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ChemicalEntity/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ChemicalEntity/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ChemicalEntity/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ChemicalEntity/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ChemicalEntity/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ChemicalEntity",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Chromosome",
- "synonym": [ ],
-
"definition": [- "A chromosome can be used as an abstract representation of a (not necessarily named) chromosome to represent ploidy within a data set. The \"Chromosome\" instance is then used for for denoting the locus of phased genotypes.\n\nFor placing genomic features (\"Feature\" class instances) on a chromosome, contig, scaffold, etc., please see the \"Landmark\" class. It is encouraged that Sequence Ontology terms are used to annotate a Landmark with a biological type (s.a. \"chromosome\", \"contig\", etc.).\n\nEncodes for \"sequencing-scope\" pragma in GVF."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#Chromosome",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Chromosome",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Chromosome/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Chromosome/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Chromosome/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Chromosome/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Chromosome/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Chromosome/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Chromosome/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Chromosome/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Chromosome",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Codon Sequence",
- "synonym": [ ],
-
"definition": [- "A codon sequence is a nucleotide sequence underlying a potential amino acid sequence. Codon sequences are three bases of length or multiples thereof.\n\nEncodes for \"Variant_codon\" and \"Reference_codon\" attributes in GVF."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#CodonSequence",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CodonSequence",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CodonSequence/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CodonSequence/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CodonSequence/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CodonSequence/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CodonSequence/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CodonSequence/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CodonSequence/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CodonSequence/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23CodonSequence",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Collection",
- "synonym": [ ],
-
"definition": [- "A collection is a container for genomic data. A collection may contain information about genomic data including -- but not limited to -- contents of GFF3, GTF, GVF and VCF files. The latter are better represented by \"File\" class instances, whereas the result of unions or intersections between different \"File\" class instances should be captured within this format-independent \"Collection\" class. When importing data whose provenance is not file based, instances of \"Collection\" should be utilized (e.g., database exports)."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#Collection",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Collection",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Collection/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Collection/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Collection/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Collection/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Collection/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Collection/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Collection/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Collection/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Collection",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Comment",
- "synonym": [ ],
-
"definition": [- "A comment is a remark about a piece of information, an observation or statement. In the context of GFF3, GVF, etc., genomic feature and variation descriptions, \"isAfter\" and \"isBefore\" relationships should be used to indicate where a comment is situated between pragma or feature statements of GFF3, GTF, GVF or VCF files.\n\nFor specific descriptions or textual annotations of genomic features, the use of the \"Note\" class is encouraged."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#Comment",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Comment",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Comment/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Comment/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Comment/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Comment/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Comment/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Comment/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Comment/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Comment/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Comment",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Conditional Genotype Quality",
- "synonym": [ ],
-
"definition": [- "Conditional genotype quality expressed in form of a \"Phred Score\". It denotes the score of the genotype being wrong under the assumption/condition that the genomic site is a sequence variant.\n\nEncodes for \"GQ\" additional information in VCF files."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#ConditionalGenotypeQuality",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ConditionalGenotypeQuality",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ConditionalGenotypeQuality/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ConditionalGenotypeQuality/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ConditionalGenotypeQuality/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ConditionalGenotypeQuality/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ConditionalGenotypeQuality/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ConditionalGenotypeQuality/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ConditionalGenotypeQuality/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ConditionalGenotypeQuality/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ConditionalGenotypeQuality",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Contig",
- "synonym": [ ],
-
"definition": [- "A contig is a contiguous DNA sequence that has been assembled from shorter overlapping DNA segments. \"Contig\" is a specialization of a \"Collection\" and should be used to aggregate features, but not for indicating that a \"Landmark\" is representing a contig. It is encouraged that the latter is annotated by a term of the Sequence Ontology.\n\nEncodes for \"sequencing-scope\" in GVF and the \"contig\" information field in VCF."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#Contig",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Contig",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Contig/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Contig/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Contig/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Contig/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Contig/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Contig/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Contig/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Contig/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Contig",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Coverage",
- "synonym": [ ],
-
"definition": [- "Number of nucleic acid sequence reads for a particular genomic locus (a region or single base pair).\n\nAccounts for \"DP\" additional information in VCF files."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#Coverage",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Coverage",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Coverage/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Coverage/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Coverage/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Coverage/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Coverage/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Coverage/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Coverage/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Coverage/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Coverage",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "DNA Sequence",
- "synonym": [ ],
-
"definition": [- "A DNA sequence is a sequence of nucleic acids.\n\nIt can be used to describe \"FASTA\" annotations in both GFF3 and GVF files as well as short sequences in VCF files."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#DNASequence",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNASequence",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNASequence/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNASequence/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNASequence/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNASequence/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNASequence/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNASequence/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNASequence/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNASequence/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23DNASequence",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Exome",
- "synonym": [ ],
-
"definition": [- "Representation of an exome. Features that constitute the exome may be linked via one or more \"Collection\", \"Catalog\", \"Contig\", \"Scaffold\" or \"File\" instances.\n\n\"Exome\" can be used for describing data contents of the \"sequencing-scope\" pragma in GVF files."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#Exome",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Exome",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Exome/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Exome/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Exome/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Exome/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Exome/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Exome/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Exome/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Exome/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Exome",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "External Reference",
- "synonym": [ ],
-
"definition": [- "A cross-reference to associate an entity to a representation in another database.\n\nEncodes for the \"Dbxref\" attribute in GFF3 and GVF. Can be used to describe the contents of the \"source\" column in GTF files. Captures the \"genome-build\" pragma, \"source-method\", \"attribute-method\", \"phenotype-description\", and \"phased-genotypes\" structured pragmas in GVF. Accounts for the \"assembly\" and \"pedigreeDB\" information fields, and \"DB\", \"H2\", \"H3\", \"1000G\" additional information in VCF."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#ExternalReference",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ExternalReference",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ExternalReference/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ExternalReference/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ExternalReference/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ExternalReference/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ExternalReference/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ExternalReference/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ExternalReference/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ExternalReference/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ExternalReference",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Feature",
- "synonym": [ ],
-
"definition": [- "The feature class captures information about genomic sequence features and variations. A genomic feature can be a large object, such as a chromosome or contig, down to single base-pair reference or variant alleles."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#Feature",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Feature",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Feature/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Feature/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Feature/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Feature/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Feature/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Feature/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Feature/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Feature/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Feature",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "File",
- "synonym": [ ],
-
"definition": [- "A file represents the contents of a GFF3, GTF, GVF or VCF file. It can capture genomic meta-data that is specific to any of these file formats. The result of unions, intersections or other operations between \"File\" class instances should be capture with the generic \"Collection\" class, which is format independent."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#File",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23File",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23File/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23File/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23File/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23File/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23File/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23File/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23File/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23File/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23File",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Functional Specification",
- "synonym": [ ],
-
"definition": [- "A functional specification of bioinformatics data, i.e. the specification of genomic material that potentially has biological function. This class should not be directly instantiated, but instead, its subclass \"Genotype\" should be used."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#FunctionalSpecification",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23FunctionalSpecification",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23FunctionalSpecification/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23FunctionalSpecification/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23FunctionalSpecification/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23FunctionalSpecification/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23FunctionalSpecification/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23FunctionalSpecification/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23FunctionalSpecification/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23FunctionalSpecification/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23FunctionalSpecification",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Genome",
- "synonym": [ ],
-
"definition": [- "Representation of a genome. Genomic features that constitute the genome may be linked via one or more \"Collection\", \"Catalog\", \"Contig\", \"Scaffold\" or \"File\" instances.\n\n\"Genome\" can be used for describing data contents of the \"genome-build\" and \"sequencing-scope\" pragmas in GVF files."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#Genome",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genome",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genome/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genome/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genome/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genome/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genome/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genome/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genome/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genome/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genome",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Genotype",
- "synonym": [ ],
-
"definition": [- "The genotype is the genetic information captured in a particular genome. It can also refer to one or more populations, if statistical distributions are provided that assign genetic codes to groups of individuals.\n\nA genotype is denoted by a string of slash-separated list of alleles (\"has value\" property). The length of the list is dependent on the ploidy of the studied species as well as sequencing technique used.\n\nExample: \"A/G\" denotes a genotype with alleles \"A\" and \"G\".\n\nEncodes for the \"Genotype\" attribute in GVF and \"GT\" additional information in VCF."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#Genotype",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genotype",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genotype/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genotype/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genotype/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genotype/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genotype/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genotype/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genotype/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genotype/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Genotype",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Germline Cell",
- "synonym": [ ],
-
"definition": [- "The germline feature class captures information about genomic sequence features arising from germline cells.\n\nVCF files permit the explicit annotation with \"Somatic Cell\" via \"SOMATIC\" additional information. The absence of that field does not imply the presence of germine cell material though. Describes the \"genomic-source\" pragma in GVF."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#GermlineCell",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GermlineCell",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GermlineCell/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GermlineCell/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GermlineCell/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GermlineCell/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GermlineCell/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GermlineCell/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GermlineCell/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GermlineCell/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23GermlineCell",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Haplotype",
- "synonym": [ ],
-
"definition": [- "A \"Haplotype\" is a collection of \"Genotype\" or \"Sequence Variant\" instances. It can imply that a set of genes is inherited as a group, or alternatively, that the set of genotypes or sequence variance has a biological function when acting together (e.g., there exists a disease association).\n\nHaplotype instances should only catalog a single type, i.e. either \"Genotype\" or \"Sequence Variant\" instances; they should not mix both types (see also \"Catalog\").\n\nEncodes for \"HQ\" additional information in VCF."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#Haplotype",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Haplotype",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Haplotype/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Haplotype/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Haplotype/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Haplotype/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Haplotype/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Haplotype/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Haplotype/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Haplotype/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Haplotype",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Identifier",
- "synonym": [ ],
-
"definition": [- "An identifier labels an entity with preferably a single term that is interpreted as an accession. An accession labels entities that are part of a collection of similar type. More generic naming of entities can be achieved using the \"Label\" class.\n\nEncodes for the \"seqid\" column in GFF3 and GVF; encodes for the \"seqname\" column in GTF and \"CHROM\" column in VCF. Captures the \"ID\" attribute in GFF3 and GVF. Suitable for expression values of \"individual-id\" and \"technology-platform-machine-id\" pragmas in GVF. Encodes for the \"ID\" key/value property in VCF."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#Identifier",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Identifier",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Identifier/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Identifier/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Identifier/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Identifier/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Identifier/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Identifier/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Identifier/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Identifier/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Identifier",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Information Content Entity",
- "synonym": [ ],
-
"definition": [- "An information content entity is a data structure or data type that requires background information or specific domain knowledge to be interpreted correctly. Information content entities can be of simple structure, such as \"Label\" that only requires the application of \"has value\" to be meaningful, or, they can be of complex structure such as \"Locus\" which becomes meaningful with multiple FALDO annotations."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#InformationContentEntity",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23InformationContentEntity",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23InformationContentEntity/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23InformationContentEntity/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23InformationContentEntity/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23InformationContentEntity/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23InformationContentEntity/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23InformationContentEntity/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23InformationContentEntity/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23InformationContentEntity/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23InformationContentEntity",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Label",
- "synonym": [ ],
-
"definition": [- "A label is a term or short list of terms that describe an entity for the purpose of distinguishing it from entities of similar type. It should be considered to utilize the \"Identifier\" class, if labels of entities are sufficiently unique to actually identify them.\n\nEncodes for the \"PEDIGREE\" information field in VCF."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#Label",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Label",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Label/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Label/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Label/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Label/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Label/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Label/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Label/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Label/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Label",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Landmark",
- "synonym": [ ],
-
"definition": [- "A landmark establishes a coordinate system for features. Landmarks can be chromosomes, contigs, scaffolds or other constructs that can harbor \"Feature\" class instances. For expressing ploidy within a data set, please refer to the \"Chromosome\" class.\n\nTo annotate a landmark with a biological type, it is encouraged to use terms of the Sequence Ontology, but not the classes \"Chromosome\", \"Scaffold\" and \"Contig\". The latter classes are used for describing ploidy within a dataset as well as offering means of data aggregation.\n\nEncodes for the \"seqid\" column in GFF3 and GVF; encodes for the \"seqname\" column in GTF and \"CHROM\" column in VCF. Captures the \"sequence-region\" pragma in in GFF3 and GVF as well as their \"FASTA\" annotation. Encodes for \"DNA\", \"RNA\" and \"Protein\" \"##\"-lines in GTF. Captures the \"contig\" information field in VCF."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#Landmark",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Landmark",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Landmark/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Landmark/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Landmark/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Landmark/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Landmark/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Landmark/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Landmark/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Landmark/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Landmark",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Likelihood",
- "synonym": [ ],
-
"definition": [- "A \"Likelihood\" is a probability of a certain even occurring.\n\nFor use with \"GL\" and \"GP\" additional information in VCF files."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#Likelihood",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Likelihood",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Likelihood/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Likelihood/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Likelihood/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Likelihood/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Likelihood/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Likelihood/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Likelihood/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Likelihood/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Likelihood",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Likelihood of Heterogeneous Ploidy",
- "synonym": [ ],
-
"definition": [- "\"Likelihood of Heterogeneous Ploidy\" expresses the likelihood of genotypes in absence of copy number data.\n\nSpecifically designed to encode for values of \"GLE\" additional information in VCF files."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#LikelihoodOfHeterogeneousPloidy",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23LikelihoodOfHeterogeneousPloidy",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23LikelihoodOfHeterogeneousPloidy/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23LikelihoodOfHeterogeneousPloidy/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23LikelihoodOfHeterogeneousPloidy/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23LikelihoodOfHeterogeneousPloidy/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23LikelihoodOfHeterogeneousPloidy/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23LikelihoodOfHeterogeneousPloidy/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23LikelihoodOfHeterogeneousPloidy/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23LikelihoodOfHeterogeneousPloidy/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23LikelihoodOfHeterogeneousPloidy",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Locus",
- "synonym": [ ],
-
"definition": [- "A locus refers to a position within a designated genomic landmark. Actual locus coordinates should be provided using classes of the Feature Annotation Location Description Ontology.\n\nThe class encodes for the \"start\", \"end\" and \"strand\" columns in GFF3, GTF, and GVF and for the \"POS\" column in VCF. It also encodes the \"Start_range\" and \"End_range\" attributes in GVF."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#Locus",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Locus",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Locus/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Locus/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Locus/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Locus/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Locus/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Locus/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Locus/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Locus/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Locus",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Mapping Quality",
- "synonym": [ ],
-
"definition": [- "Root mean square mapping quality.\n\nEncodes values of the \"MQ\" additional information in VCF files."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#MappingQuality",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23MappingQuality",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23MappingQuality/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23MappingQuality/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23MappingQuality/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23MappingQuality/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23MappingQuality/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23MappingQuality/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23MappingQuality/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23MappingQuality/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23MappingQuality",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Material Entity",
- "synonym": [ ],
-
"definition": [- "A material entity represents a physical object. In the context of genomic features and variations, material entities are cells, organisms, sequences, chromosomes, etc.\n\n\"Material Entity\" should not be instantiated as such, instead, it is suggested that its subclasses \"Genome\", \"DNA Sequence\", \"Sample Count\", etc. are appropriated."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#MaterialEntity",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23MaterialEntity",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23MaterialEntity/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23MaterialEntity/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23MaterialEntity/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23MaterialEntity/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23MaterialEntity/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23MaterialEntity/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23MaterialEntity/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23MaterialEntity/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23MaterialEntity",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Name",
- "synonym": [ ],
-
"definition": [- "A name assigns an entity a non-formal term (or multiples thereof) that can provide information about the entities identity. Unlike an \"Identifier\", a name should not be considered unique.\n\nEncodes for the \"feature\" column in GTF. Captures the \"genome-build\" pragma in GFF3 and GVF. Captures the \"population\", \"technology-platform-name\" pragmas in GVF."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#Name",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Name",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Name/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Name/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Name/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Name/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Name/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Name/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Name/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Name/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Name",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Note",
- "synonym": [ ],
-
"definition": [- "A note is a short textual description about an entity. It provides a formal or semi-formal description of an entity, as opposed to a \"Comment\".\n\nEncodes for the \"sample-description\" pragma and \"Comment\" key/value pairs in structured attributes in GVF. Captures \"Description\" key/value pairs in information fields and \"SB\" information field in VCF."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#Note",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Note",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Note/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Note/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Note/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Note/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Note/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Note/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Note/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Note/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Note",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Number of Reads",
- "synonym": [ ],
-
"definition": [- "Number of reads supporting a particular feature or variant.\n\nCan encode for \"MQ0\" additional information in VCF files, if additional annotations are provided to denote a mapping quality of zero for the given count. In GVF files, the class accounts for the \"Variant_reads\" attribute."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#NumberOfReads",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23NumberOfReads",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23NumberOfReads/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23NumberOfReads/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23NumberOfReads/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23NumberOfReads/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23NumberOfReads/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23NumberOfReads/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23NumberOfReads/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23NumberOfReads/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23NumberOfReads",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Peptide Sequence",
- "synonym": [ ],
-
"definition": [- "A peptide sequence is an ordered sequence of amino acid residues, but which may not necessarily be a protein sequence. For encoding sequences of proteins, the subclass \"Protein Sequence\" should be used.\n\nEncodes for \"FASTA\" annotation in GFF3 and GVF."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#PeptideSequence",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23PeptideSequence",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23PeptideSequence/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23PeptideSequence/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23PeptideSequence/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23PeptideSequence/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23PeptideSequence/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23PeptideSequence/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23PeptideSequence/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23PeptideSequence/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23PeptideSequence",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Phred Score",
- "synonym": [ ],
-
"definition": [- "The Phred score can be used to assign quality scores to base calls of DNA sequences.\n\nGVF supports the use of Phred scores in the \"score\" column, but this information needs to be obtained/given by the data provider. In VCF files, the \"QUAL\" column and \"PL\", \"HQ\", and \"PQ\" additional information carries Phred scores that can be encoded as \"Phred Score\".\n\nGFVO's \"Score\" and \"Phred Score\" cannot be defined as equivalent to the Sequence Ontology terms \"score\" (SO:0001685) and \"quality_value\" (SO:0001686) due to differences in inheritance between the two ontology implementations. GFVO defines \"Phred Score\" as a subclass of \"Score\", but the Sequence Ontology defines \"score\" as a sibling of \"quality_value\"."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#PhredScore",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23PhredScore",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23PhredScore/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23PhredScore/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23PhredScore/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23PhredScore/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23PhredScore/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23PhredScore/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23PhredScore/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23PhredScore/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23PhredScore",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Prenatal Cell",
- "synonym": [ ],
-
"definition": [- "A prenatal feature is purportedly associated with prenatal cells; the GVF specification declares this feature type under the prama directive \"##genomic-source\", but does not describe its semantics and the referenced Logical Observation Identifiers Names and Codes (LOINC, http://loinc.org), do not define the meaning or intended usage of the term \"prenatal\" either."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#PrenatalCell",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23PrenatalCell",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23PrenatalCell/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23PrenatalCell/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23PrenatalCell/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23PrenatalCell/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23PrenatalCell/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23PrenatalCell/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23PrenatalCell/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23PrenatalCell/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23PrenatalCell",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Protein Sequence",
- "synonym": [ ],
-
"definition": [- "A protein sequence is a peptide sequence which represents the primary structure of a protein.\n\nEncodes for \"sequencing-scope\" pragma in GVF."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#ProteinSequence",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ProteinSequence",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ProteinSequence/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ProteinSequence/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ProteinSequence/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ProteinSequence/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ProteinSequence/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ProteinSequence/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ProteinSequence/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ProteinSequence/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ProteinSequence",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Proteome",
- "synonym": [ ],
-
"definition": [- "Representation of a proteome. Features that constitute or contribute to the proteome may be linked via one or more \"Collection\", \"Catalog\", \"Contig\", \"Scaffold\" or \"File\" instances.\n\nIt is envisioned that \"Proteome\" could be used for describing data contents of the \"sequencing-scope\" pragma in GVF files."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#Proteome",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Proteome",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Proteome/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Proteome/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Proteome/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Proteome/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Proteome/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Proteome/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Proteome/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Proteome/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Proteome",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Quantity",
- "synonym": [ ],
-
"definition": [- "A property of a phenomenon, body, or substance, where the property has a value that can be expressed by means of a number. This class is typically not directly instantiated, but instead, its subclasses \"Allele Frequency\", \"Average Coverage\", etc. are used."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#Quantity",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Quantity",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Quantity/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Quantity/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Quantity/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Quantity/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Quantity/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Quantity/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Quantity/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Quantity/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Quantity",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Reference Sequence",
- "synonym": [ ],
-
"definition": [- "Denotes the reference sequence of a feature. The reference sequence is of importance when dealing with genomic variation data, which is expressed by the \"Variant\" class.\n\nEncodes for the \"Reference_seq\" and \"Sequence_context\" attributes in GVF and the \"REF\" column in VCF."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#ReferenceSequence",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ReferenceSequence",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ReferenceSequence/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ReferenceSequence/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ReferenceSequence/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ReferenceSequence/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ReferenceSequence/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ReferenceSequence/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ReferenceSequence/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ReferenceSequence/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23ReferenceSequence",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Sample",
- "synonym": [ ],
-
"definition": [- "A sample is a limited quantity of a chemical entity, which is typically used (destructively/non-desctructively) in a scientific analysis or test.\n\nIt can be applied to describe contents of the \"sample-description\" pragma in GVF files or the \"SAMPLE\" information field in VCF files."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#Sample",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Sample",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Sample/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Sample/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Sample/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Sample/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Sample/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Sample/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Sample/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Sample/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Sample",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Sample Count",
- "synonym": [ ],
-
"definition": [- "Number of samples in the dataset.\n\nEncodes for \"NS\" additional information in VCF files."
],- "obsolete": false,
- "@id": "http://www.biointerchange.org/gfvo#SampleCount",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23SampleCount",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23SampleCount/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23SampleCount/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23SampleCount/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23SampleCount/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23SampleCount/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23SampleCount/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23SampleCount/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23SampleCount/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23SampleCount",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
}
]
}