{
- "page": 1,
- "pageCount": 1,
- "totalCount": 4,
- "prevPage": null,
- "nextPage": null,
-
"links": {- "nextPage": null,
- "prevPage": null
},-
"collection": [-
{- "prefLabel": "Amino Acid",
- "synonym": [ ],
-
"definition": [- "\"Amino Acid\" encodes for the \"Variant_aa\" and \"Reference_aa\" attributes in GVF files. Linking an \"Amino Acid\" instance to a \"Reference Sequence\" or \"Sequence Variant\" instance denotes the genomic context of the amino acid."
],- "cui": [ ],
- "semanticType": [ ],
- "obsolete": false,
- "created": null,
- "modified": null,
- "memberOf": [ ],
- "inScheme": [ ],
- "@id": "http://www.biointerchange.org/gfvo#AminoAcid",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AminoAcid",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AminoAcid/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AminoAcid/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AminoAcid/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AminoAcid/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AminoAcid/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AminoAcid/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AminoAcid/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AminoAcid/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23AminoAcid",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {- "@vocab": "http://data.bioontology.org/metadata/",
- "prefLabel": "http://www.w3.org/2004/02/skos/core#prefLabel",
- "synonym": "http://www.w3.org/2004/02/skos/core#altLabel",
- "definition": "http://www.w3.org/2004/02/skos/core#definition",
- "obsolete": "http://www.w3.org/2002/07/owl#deprecated",
- "semanticType": "http://bioportal.bioontology.org/ontologies/umls/hasSTY",
- "cui": "http://bioportal.bioontology.org/ontologies/umls/cui",
- "inScheme": "http://www.w3.org/2004/02/skos/core#inScheme",
- "created": "http://purl.org/dc/terms/created",
- "modified": "http://purl.org/dc/terms/modified",
- "@language": "en"
}
},-
{- "prefLabel": "Chromosome",
- "synonym": [ ],
-
"definition": [- "A chromosome can be used as an abstract representation of a (not necessarily named) chromosome to represent ploidy within a data set. The \"Chromosome\" instance is then used for for denoting the locus of phased genotypes.\n\nFor placing genomic features (\"Feature\" class instances) on a chromosome, contig, scaffold, etc., please see the \"Landmark\" class. It is encouraged that Sequence Ontology terms are used to annotate a Landmark with a biological type (s.a. \"chromosome\", \"contig\", etc.).\n\nEncodes for \"sequencing-scope\" pragma in GVF."
],- "cui": [ ],
- "semanticType": [ ],
- "obsolete": false,
- "created": null,
- "modified": null,
- "memberOf": [ ],
- "inScheme": [ ],
- "@id": "http://www.biointerchange.org/gfvo#Chromosome",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Chromosome",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Chromosome/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Chromosome/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Chromosome/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Chromosome/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Chromosome/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Chromosome/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Chromosome/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Chromosome/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Chromosome",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {- "@vocab": "http://data.bioontology.org/metadata/",
- "prefLabel": "http://www.w3.org/2004/02/skos/core#prefLabel",
- "synonym": "http://www.w3.org/2004/02/skos/core#altLabel",
- "definition": "http://www.w3.org/2004/02/skos/core#definition",
- "obsolete": "http://www.w3.org/2002/07/owl#deprecated",
- "semanticType": "http://bioportal.bioontology.org/ontologies/umls/hasSTY",
- "cui": "http://bioportal.bioontology.org/ontologies/umls/cui",
- "inScheme": "http://www.w3.org/2004/02/skos/core#inScheme",
- "created": "http://purl.org/dc/terms/created",
- "modified": "http://purl.org/dc/terms/modified",
- "@language": "en"
}
},-
{- "prefLabel": "Sample",
- "synonym": [ ],
-
"definition": [- "A sample is a limited quantity of a chemical entity, which is typically used (destructively/non-desctructively) in a scientific analysis or test.\n\nIt can be applied to describe contents of the \"sample-description\" pragma in GVF files or the \"SAMPLE\" information field in VCF files."
],- "cui": [ ],
- "semanticType": [ ],
- "obsolete": false,
- "created": null,
- "modified": null,
- "memberOf": [ ],
- "inScheme": [ ],
- "@id": "http://www.biointerchange.org/gfvo#Sample",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Sample",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Sample/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Sample/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Sample/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Sample/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Sample/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Sample/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Sample/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Sample/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Sample",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {- "@vocab": "http://data.bioontology.org/metadata/",
- "prefLabel": "http://www.w3.org/2004/02/skos/core#prefLabel",
- "synonym": "http://www.w3.org/2004/02/skos/core#altLabel",
- "definition": "http://www.w3.org/2004/02/skos/core#definition",
- "obsolete": "http://www.w3.org/2002/07/owl#deprecated",
- "semanticType": "http://bioportal.bioontology.org/ontologies/umls/hasSTY",
- "cui": "http://bioportal.bioontology.org/ontologies/umls/cui",
- "inScheme": "http://www.w3.org/2004/02/skos/core#inScheme",
- "created": "http://purl.org/dc/terms/created",
- "modified": "http://purl.org/dc/terms/modified",
- "@language": "en"
}
},-
{- "prefLabel": "Sequence",
- "synonym": [ ],
-
"definition": [- "A sequence provides information about any biopolymer sequences. Specialized subclasses are provided to denote specialized instances of sequences, such as \"Codon Sequence\", \"Reference Sequence\", \"Protein Sequence\", etc.\n\nCan be used to encode for the \"sequencing-scope\" pragma in GVF files. See subclasses for applications in both GFF3 and GVF files."
],- "cui": [ ],
- "semanticType": [ ],
- "obsolete": false,
- "created": null,
- "modified": null,
- "memberOf": [ ],
- "inScheme": [ ],
- "@id": "http://www.biointerchange.org/gfvo#Sequence",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Sequence",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/GFVO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Sequence/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Sequence/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Sequence/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Sequence/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Sequence/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Sequence/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Sequence/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/GFVO/classes/http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Sequence/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/GFVO?p=classes&conceptid=http%3A%2F%2Fwww.biointerchange.org%2Fgfvo%23Sequence",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {- "@vocab": "http://data.bioontology.org/metadata/",
- "prefLabel": "http://www.w3.org/2004/02/skos/core#prefLabel",
- "synonym": "http://www.w3.org/2004/02/skos/core#altLabel",
- "definition": "http://www.w3.org/2004/02/skos/core#definition",
- "obsolete": "http://www.w3.org/2002/07/owl#deprecated",
- "semanticType": "http://bioportal.bioontology.org/ontologies/umls/hasSTY",
- "cui": "http://bioportal.bioontology.org/ontologies/umls/cui",
- "inScheme": "http://www.w3.org/2004/02/skos/core#inScheme",
- "created": "http://purl.org/dc/terms/created",
- "modified": "http://purl.org/dc/terms/modified",
- "@language": "en"
}
}
]
}