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{-
"label": [],-
"definition": [- "Consider re-defing to: An alternative name for a class or property which can mean the same thing as the preferred name (semantically equivalent, narrow, broad or related).",
- "A label for a class or property that can be used to refer to the class or property instead of the preferred rdfs:label. Alternative labels should be used to indicate community- or context-specific labels, abbreviations, shorthand forms and the like."
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- "hasChildren": true,
- "@id": "http://purl.obolibrary.org/obo/IAO_0000118",
- "@type": "http://www.w3.org/2002/07/owl#AnnotationProperty",
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{-
"label": [],-
"definition": [- "relation that links two events, processes, states, or objects such that one event, process, state, or object (a cause) contributes to the production of another event, process, state, or object (an effect) where the cause is partly or wholly responsible for the effect, and the effect is partly or wholly dependent on the cause."
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- "@id": "http://purl.obolibrary.org/obo/RO_0002410",
- "@type": "http://www.w3.org/2002/07/owl#ObjectProperty",
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"links": {},-
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{-
"label": [],-
"definition": [- "A relationship between a specifically dependent continuant or process and a generically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant or process also depends on that same independent continuant. Multiple specifically dependent continuants or processes can concretize the same generically dependent continuant."
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- "hasChildren": false,
- "@id": "http://purl.obolibrary.org/obo/RO_0000059",
- "@type": "http://www.w3.org/2002/07/owl#ObjectProperty",
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"links": {},-
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{-
"label": [],-
"definition": [- "Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant",
- "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t"
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- "hasChildren": false,
- "@id": "http://purl.obolibrary.org/obo/BFO_0000067",
- "@type": "http://www.w3.org/2002/07/owl#ObjectProperty",
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"links": {},-
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{-
"label": [],-
"definition": [- "A relationship that holds between two entities, where the entities exhibit a statistical dependence relationship. The entities may be statistical variables, or they may be other kinds of entities such as diseases, chemical entities or processes."
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- "hasChildren": true,
- "@id": "http://purl.obolibrary.org/obo/RO_0002610",
- "@type": "http://www.w3.org/2002/07/owl#ObjectProperty",
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"links": {},-
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{-
"label": [],-
"definition": [- "Formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007"
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- "hasChildren": false,
- "@id": "http://purl.obolibrary.org/obo/IAO_0000119",
- "@type": "http://www.w3.org/2002/07/owl#AnnotationProperty",
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"links": {},-
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{-
"label": [],-
"definition": [- "a relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity"
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- "hasChildren": false,
- "@id": "http://purl.obolibrary.org/obo/RO_0001000",
- "@type": "http://www.w3.org/2002/07/owl#ObjectProperty",
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"links": {},-
"@context": {}
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{-
"label": [],-
"definition": [- "A relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist through the separation or transformation of a part of the old entity, and the new entity inherits a significant portion of the matter belonging to that part of the old entity."
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- "hasChildren": false,
- "@id": "http://purl.obolibrary.org/obo/ENVO_01003004",
- "@type": "http://www.w3.org/2002/07/owl#ObjectProperty",
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"links": {},-
"@context": {}
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{-
"label": [],-
"definition": [- "a relation between two distinct material entities, the old entity and the new entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity"
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- "hasChildren": false,
- "@id": "http://purl.obolibrary.org/obo/RO_0001001",
- "@type": "http://www.w3.org/2002/07/owl#ObjectProperty",
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"links": {},-
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{-
"label": [],-
"definition": [- "A phrase describing how a term should be used and/or a citation to a work which uses it. May also include other kinds of examples that facilitate immediate understanding, such as widely know prototypes or instances of a class, or cases where a relation is said to hold."
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- "hasChildren": false,
- "@id": "http://purl.obolibrary.org/obo/IAO_0000112",
- "@type": "http://www.w3.org/2002/07/owl#AnnotationProperty",
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"links": {},-
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{-
"label": [],-
"definition": [- "holds between two entities when some genome-level process such as gene expression is involved. This includes transcriptional, spliceosomal events. These relations can be used between either macromolecule entities (such as regions of nucleic acid) or between their abstract informational counterparts."
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- "hasChildren": true,
- "@id": "http://purl.obolibrary.org/obo/RO_0002330",
- "@type": "http://www.w3.org/2002/07/owl#ObjectProperty",
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"links": {},-
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{-
"label": [],-
"definition": [- "Example: a spherical object has the quality of being spherical, and the spherical quality has_cross_section round.",
- "s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2."
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- "hasChildren": false,
- "@id": "http://purl.obolibrary.org/obo/RO_0015011",
- "@type": "http://www.w3.org/2002/07/owl#ObjectProperty",
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"links": {},-
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{-
"label": [- "has increased age-specific mortality rate"
],-
"definition": [- "This could be used to record the increased infant morality rate in some population compared to wild-type. For examples of usage see http://purl.obolibrary.org/obo/FBcv_0000351 and subclasses.",
- "Then percentage of organisms in a population that die during some specified age range (age-specific mortality rate), minus the percentage that die in during the same age range in a wild-type population."
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- "hasChildren": false,
- "@id": "http://purl.obolibrary.org/obo/RO_0002029",
- "@type": "http://www.w3.org/2002/07/owl#DatatypeProperty",
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"links": {},-
"@context": {}
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{-
"label": [],-
"definition": [- "Ontology annotation property. Relates an ontology to a term that is a designated root term of the ontology. Display tools like OLS can use terms annotated with this property as the starting point for rendering the ontology class hierarchy. There can be more than one root."
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- "hasChildren": false,
- "@id": "http://purl.obolibrary.org/obo/IAO_0000700",
- "@type": "http://www.w3.org/2002/07/owl#AnnotationProperty",
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"links": {},-
"@context": {}
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{-
"label": [],-
"definition": [- "x has prototype y if and only if x is an instance of C and y is a prototypical instance of C. For example, every instance of heart, both normal and abnormal is related by the has prototype relation to some instance of a \"canonical\" heart, which participates in blood circulation."
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- "hasChildren": false,
- "@id": "http://purl.obolibrary.org/obo/RO_0002214",
- "@type": "http://www.w3.org/2002/07/owl#ObjectProperty",
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"links": {},-
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{-
"label": [],-
"definition": [- "The primary use case for this relation was to link a biological model system such as a cell line or model organism to a disease it is used to investigate, in virtue of the model system exhibiting features similar to that of the disease of interest. But the relation is defined more broadly to support other use cases, such as linking genes in which alterations are made to create model systems to the condition the system is used to interrogate, or computational models to real-world phenomena they are defined to simulate.",
- "A relation between a biological, experimental, or computational artifact and an entity it is used to study, in virtue of its replicating or approximating features of the studied entity."
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- "hasChildren": false,
- "@id": "http://purl.obolibrary.org/obo/RO_0003301",
- "@type": "http://www.w3.org/2002/07/owl#ObjectProperty",
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"links": {},-
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{-
"label": [],-
"definition": [- "Relation between a 'neuron projection bundle' and a region in which one or more of its component neuron projections either synapses to targets or receives synaptic input.\nT innervates some R\nExpands_to: T has_fasciculating_neuron_projection that synapse_in some R."
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- "hasChildren": false,
- "@id": "http://purl.obolibrary.org/obo/RO_0002134",
- "@type": "http://www.w3.org/2002/07/owl#ObjectProperty",
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"links": {},-
"@context": {}
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{-
"label": [],-
"definition": [- "A relationship between a generically dependent continuant and a specifically dependent continuant or process, in which the generically dependent continuant depends on some independent continuant or process in virtue of the fact that the specifically dependent continuant or process also depends on that same independent continuant. A generically dependent continuant may be concretized as multiple specifically dependent continuants or processes."
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- "hasChildren": false,
- "@id": "http://purl.obolibrary.org/obo/RO_0000058",
- "@type": "http://www.w3.org/2002/07/owl#ObjectProperty",
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"links": {},-
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{-
"label": [- "logical macro assertion"
],-
"definition": [- "An assertion that involves at least one OWL object that is intended to be expanded into one or more logical axioms. The logical expansion can yield axioms expressed using any formal logical system, including, but not limited to OWL2-DL."
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- "hasChildren": true,
- "@id": "http://purl.obolibrary.org/obo/RO_0002416",
- "@type": "http://www.w3.org/2002/07/owl#AnnotationProperty",
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"links": {},-
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{-
"label": [- "obsolete downstream in neural circuit with"
],-
"definition": [- "Obsoleted as no longer a useful relationship (all neurons in an organism are in a neural circuit with each other).",
- "OBSOLETE A relation that holds between a neuron that is synapsed_by another neuron or a neuron that is connected indirectly to another by a chain of neurons, each synapsed_by the next, in which the direction is from the last to the first."
],- "children": [ ],
- "hasChildren": false,
- "@id": "http://purl.obolibrary.org/obo/RO_0000302",
- "@type": "http://www.w3.org/2002/07/owl#ObjectProperty",
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"links": {},-
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{-
"label": [- "obsolete in neural circuit with"
],-
"definition": [- "Obsoleted as no longer a useful relationship (all neurons in an organism are in a neural circuit with each other).",
- "OBSOLETE A relation that holds between two neurons connected directly via a synapse, or indirectly via a series of synaptically connected neurons."
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- "hasChildren": false,
- "@id": "http://purl.obolibrary.org/obo/RO_0000300",
- "@type": "http://www.w3.org/2002/07/owl#ObjectProperty",
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"links": {},-
"@context": {}
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{-
"label": [- "obsolete related via dependence to"
],-
"definition": [- "A relationship that holds between two entities, where the relationship holds based on the presence or absence of statistical dependence relationship. The entities may be statistical variables, or they may be other kinds of entities such as diseases, chemical entities or processes."
],- "children": [ ],
- "hasChildren": false,
- "@id": "http://purl.obolibrary.org/obo/RO_0002609",
- "@type": "http://www.w3.org/2002/07/owl#ObjectProperty",
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"links": {},-
"@context": {}
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{-
"label": [- "obsolete upstream in neural circuit with"
],-
"definition": [- "Obsoleted as no longer a useful relationship (all neurons in an organism are in a neural circuit with each other).",
- "OBSOLETE A relation that holds between a neuron that is synapsed_to another neuron or a neuron that is connected indirectly to another by a chain of neurons, each synapsed_to the next, in which the direction is from the last to the first."
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- "hasChildren": false,
- "@id": "http://purl.obolibrary.org/obo/RO_0000301",
- "@type": "http://www.w3.org/2002/07/owl#ObjectProperty",
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"links": {},-
"@context": {}
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{-
"label": [],-
"definition": [- "Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant",
- "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t"
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- "hasChildren": false,
- "@id": "http://purl.obolibrary.org/obo/BFO_0000066",
- "@type": "http://www.w3.org/2002/07/owl#ObjectProperty",
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"links": {},-
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{-
"label": [],-
"definition": [- "Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue.",
- "a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix."
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- "hasChildren": false,
- "@id": "http://purl.obolibrary.org/obo/RO_0003000",
- "@type": "http://www.w3.org/2002/07/owl#ObjectProperty",
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"links": {},-
"@context": {}
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{-
"label": [],-
"definition": [- "Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process"
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- "hasChildren": false,
- "@id": "http://purl.obolibrary.org/obo/BFO_0000054",
- "@type": "http://www.w3.org/2002/07/owl#ObjectProperty",
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"links": {},-
"@context": {}
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{-
"label": [],-
"definition": [- "Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process"
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- "hasChildren": false,
- "@id": "http://purl.obolibrary.org/obo/BFO_0000055",
- "@type": "http://www.w3.org/2002/07/owl#ObjectProperty",
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"links": {},-
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{-
"label": [],-
"definition": [- "There are frequently two ways to state the same thing: we can say 'spermatocyte lacks asters' or 'asters absent from spermatocyte'. In this case the quality is 'lacking all parts of type' - it is a (relational) quality of the spermatocyte, and it is with respect to instances of 'aster'. One of the popular requirements of PATO is that it continue to support 'absent', so we need to relate statements which use this quality to the 'lacking all parts of type' quality.",
- "q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e."
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- "hasChildren": false,
- "@id": "http://purl.obolibrary.org/obo/RO_0015012",
- "@type": "http://www.w3.org/2002/07/owl#ObjectProperty",
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{-
"label": [],-
"definition": [- "Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people"
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- "hasChildren": false,
- "@id": "http://purl.obolibrary.org/obo/IAO_0000117",
- "@type": "http://www.w3.org/2002/07/owl#AnnotationProperty",
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