Catherine Roussey
2017-11-15
http://ontology.irstea.fr/agronomictaxon/core
Agronomic Taxon Core
2017-11-15T11:40:51+01:00
construit manuellement par Catherine Roussey à partir du document https://fr.wikipedia.org/wiki/Taxonomie_du_bl%C3%A9.
Chaque espèce de blé proposé dans le tableau des espèces de blé a été validé à l'aide de European Wheat data base http://genbank.vurv.cz/ewdb/. Le nom du taxon et son rang a été validé en regardant d'abord le référentiel taxref de l'INPN dans un premier temps. S'il n'existait pas dans taxref alors la taxonomie du NCBI a été étudié.
Les liens vers les thesaurus agrovoc, NAL et CABI ont ensuite été ajoutés.
Les liens vers la base de données ITIS ont été ajoutés.
Les liens vers DBpedia ont été ajoutés. Attention DBpedia propose deux espèces qui ont disparues triticum zhukovsyi et triticum compactum erinaceum. Elles ne sont pas dans taxref. triticum zhukovsyi apparait dans European Wheat data base.
Les liens vers TAXREF-LD ont été ajouté.
created by Irstea. This ontology is a module that is based on skos vocabulary, linnean taxonomy ODP and classification ODP. The module was enriched by specialising taxonomic relationship based on the AOS ontology. Taxon ranks are linked to their agrovoc concepts. Some disjoint axioms between ranks were added.
Link order taxon to class taxon.
order has class
http://aims.fao.org/aos/agrontology#hasClass
Link genus taxon to family taxon.
genus has family
http://aims.fao.org/aos/agrontology#hasFamily
link species taxon to genus taxon.
Species has genus
http://aims.fao.org/aos/agrontology#hasGenus
This property relates two taxa, where the first is more specific than the second.
"http://www.ontologydesignpatterns.org/cp/owl/linnaeantaxonomy.owl#hasHigherRank"
a pour rang supérieur
has higher rank
Ontology Design Pattern LinneanTaxonomy:hashigherRank
This property relates two taxa, where the first is more specific than the second. This property transitive.
a pour rang supérieur, relation transitive
has higher rank, transitive property
link phylum taxon to kingdom taxon
phylum has Kingdom
This property relates two taxa, where the first is less specific than the second.
"http://www.ontologydesignpatterns.org/cp/owl/linnaeantaxonomy.owl#hasLowerRank"
a pour rang inférieur
has lower rank
Ontology Design Pattern LinneanTaxonomy:hasLowerRank
This property relates two taxa, where the first is less specific than the second. This property is transitive.
a pour rang inférieur, relation transitive
has lower rank, transitive property
Link family taxon to order taxon.
Family has order
http://aims.fao.org/aos/agrontology#hasOrder
link class taxon to phylum taxon
class has phylum
link variety taxon to species taxon
variety has specy
link phylum taxons to class taxons
phylum rank includes class rank
Link order taxons to family taxons.
Order rank includes family rank
http://aims.fao.org/aos/agrontology#includesFamily
Link family taxons to genus taxons
family rank includes genus rank
http://aims.fao.org/aos/agrontology#includesGenus
Link class taxons to order taxons.
class rank includes order ranks
http://aims.fao.org/aos/agrontology#includesOrder
link kingdom taxons to phyla taxons
kingdom rank includes phylum ranks
Link genus taxons to species taxons
genus rank includes specy rank
http://aims.fao.org/aos/agrontology#includesSpecies
link specy taxons to variety taxons
specy rank includes variety rank
a taxon may have different scientific name depending of the evolution of taxonomy. This property store alternative scientific name also known as synonym.
alternative scientific name
synonym scientific name
un synonyme du nom vernaculaire préféré
alternative vernacular name
nom vernaculaire synonyme
Binomial nomenclature is a formal system of naming species of living things by giving each a name composed of two parts, both of which use Latin grammatical forms. Such a name is called a binomial name (which may be shortened to just "binomial"), a binomen or a scientific name; more informally it is also called a Latin name. The first part of the name identifies the genus to which the species belongs; the second part identifies the species within the genus. For example, humans belong to the genus Homo and within this genus to the species Homo sapiens. Source Wikipedia
a pour nom scientifique
has scientific name
http://eunis.eea.europa.eu/rdf/species-schema.rdf#scientificName
http://lod.taxonconcept.org/ontology/txn.owl#scientificName
http://purl.org/biodiversity/eol/scientificName
http://purl.org/biodiversity/taxon/scientificName
http://purl.uniprot.org/core/scientificName
https://en.wikipedia.org/wiki/Binomial_nomenclature
In biology, a common name of a taxon or organism (also known as a vernacular name, English name, colloquial name, trivial name, trivial epithet, country name, popular name, or farmer's name) is a name that is based on the normal language of everyday life; this kind of name is often contrasted with the scientific name for the same organism, which is Latinized. A so-called "common name" is sometimes frequently used, but that is by no means always the case. Source Wikipedia
Un nom vernaculaire est un nom usuel, en langue locale, donné à une ou plusieurs espèces animales ou végétales dans son pays ou sa région d'origine. Il peut donc désigner des taxons très différents selon le contexte. Les noms vernaculaires sont souvent repris pour former la base des noms normalisés ou des noms vulgaires créés pour permettre la vulgarisation des noms scientifiques. Malgré leurs imprécisions, ils ont souvent la faveur dans le langage courant et font partie de la culture populaire.
source wikipedia
a pour nom commun
a pour nom vernaculaire
has common name
has vernacular name
http://ontologi.es/biol/botany#term_commonName
http://purl.org/biodiversity/taxon/commonName
https://en.wikipedia.org/wiki/Common_name
le nom scientifique qui est en cours d'usage actuellement
nom scientifique préféré
preferred scientific name
le nom vernaculaire le plus connu pour ce taxon
nom vernaculaire préféré
preferred vernacular name
ClassRank
core:ClassRank
Class is the third highest traditional taxon. E.g., in the case of humans the class is "Mammalia";.
"http://www.ontologydesignpatterns.org/cp/owl/linnaeantaxonomy.owl#Class"
Class
Classe
Ontology Design Pattern linneanTaxonomy:Class
http://aims.fao.org/aos/agrovoc/c_330935
FamilyRank
core:FamilyRank
Family is the fifth highest traditional taxon. E.g., in the case of humans the family is "Hominidae".
"http://www.ontologydesignpatterns.org/cp/owl/linnaeantaxonomy.owl#Family"
Famille
Family
Ontology Design Pattern linneanTaxonomy:Family
http://aims.fao.org/aos/agrovoc/c_330937
GenusRank
core:GenusRank
Genus is the sixth highest traditional taxon. E.g., in the case of humans the genus is "Homo".
"http://www.ontologydesignpatterns.org/cp/owl/linnaeantaxonomy.owl#Genus"
Genre
Genus
Ontology Design Pattern linneanTaxonomy:Genus
http://aims.fao.org/aos/agrovoc/c_11125
KingdomRank
core:KingdomRank
Kingdom is the highest traditional taxon. E.g., in the case of humans the kingdom is "Animalia".
http://www.ontologydesignpatterns.org/cp/owl/linnaeantaxonomy.owl#Kingdom
Kingdom
Règne
Ontology Design Pattern linneanTaxonomy:Kingdom
http://aims.fao.org/aos/agrovoc/c_330934
OrderRank
core:OrderRank
Order is the fourth highest traditional taxon. E.g., in the case of humans the phylum is "Primates".
"http://www.ontologydesignpatterns.org/cp/owl/linnaeantaxonomy.owl#Order"
Order
Ordre
Ontology Design Pattern linneanTaxonomy:Order
http://aims.fao.org/aos/agrovoc/c_330936
PhylumRank
core:PhylumRank
Phylum is the second highest traditional taxon. E.g., in the case of humans the phylum is "Chordata".
"http://www.ontologydesignpatterns.org/cp/owl/linnaeantaxonomy.owl#Phylum"
Division
Embranchement
Phylum
Ontology Design Pattern linneanTaxonomy:Phylum
http://aims.fao.org/aos/agrovoc/c_330949
SpecyRank
core:SpecyRank
Species is the lowest traditional taxon. E.g., in the case of humans the species is "Homo sapiens".
"http://www.ontologydesignpatterns.org/cp/owl/linnaeantaxonomy.owl#Species"
Espèce
Species
Ontology Design Pattern linneanTaxonomy:Species
http://aims.fao.org/aos/agrovoc/c_331243
Taxon
core:Taxon
A taxon is a concept denoting a type of organism or of a group of organisms.
"http://www.ontologydesignpatterns.org/cp/owl/linnaeantaxonomy.owl#Taxon"
Rang
Rang taxinomique
Taxon
Taxon
Ontology Design Pattern linneanTaxonomy:Taxon
http://aims.fao.org/aos/agrovoc/c_7624
Taxonomy
core:Taxonomy
Taxonomy is the academic discipline of defining groups of biological organisms on the basis of shared characteristics and giving names to those groups. Each group is given a rank and groups of a given rank can be aggregated to form a super group of higher rank and thus create a hierarchical classification. The groups created through this process are referred to as taxa (singular taxon). An example of a modern classification is the one published in 2009 by the Angiosperm Phylogeny Group for all living flowering plant families (the APG III system).
from wikipedia
Taxinomie
Taxonomie
Taxonomy
VarietyRank
In botanical nomenclature, variety (abbreviated var.; in Latin: varietas) is a taxonomic rank below that of species and subspecies but above that of form. Source Wikipedia
Variety is different from cultivar.
Une variété est un rang taxinomique de niveau inférieur au rang d'espèce. Ce rang est utilisé en botanique et en mycologie. source wikipedia
Une variété ne doit pas être confondue avec les noms de variétés cultivées aussi dénommés cultivar
Variety
Variété
https://en.wikipedia.org/wiki/Variety_%28botany%29
skos:Concept
skos:ConceptScheme
SubClassRank
Sous-classe
Subclass
SubKingdomRank
Sous-règne
Subkingdom
SubSpecyRank
Sous-espèce
Subspecies
SuperOrderRank
Super order
Superordre
Equisetopsida
Itis reconnait ce nom comme taxon de classe mais ne le valide pas comme synonyme de magnoliopsida.
https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=500004#null
https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=3254&lvl=3&p=has_linkout&p=blast_url&p=genome_blast&p=mapview&srchmode=2&keep=1&unlock
Monocotyledoneae
Lilianae
monocots
monocotylédones
https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=846542#null
Magnoliidae
ITIS reconnait ce nom de taxon comme une sous classe mais ne le valide pas. Il est considéré comme synonyme de la classe magnoliopsida.
https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=18063#null
https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=18064#null
https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=232347&lvl=3&p=has_linkout&p=blast_url&p=genome_blast&p=mapview&lin=f&keep=1&srchmode=1&unlock
Angiospermae
Tracheophyta
Magnoliophyta
Angiosperms
http://artemide.art.uniroma2.it:8081/agrovoc/agrovoc/en/page/c_330268
http://lod.nal.usda.gov/nalt/133097
http://www.cabi.org/cabthesaurus/mtwdk.exe?k=default&l=60&w=23118&n=1&s=5&t=2
https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=18061#null
https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=3398&lvl=3&p=has_linkout&p=blast_url&p=genome_blast&p=mapview&lin=f&keep=1&srchmode=1&unlock
Plantae
plantes
plants
http://artemide.art.uniroma2.it:8081/agrovoc/agrovoc/en/page/c_330074
http://lod.nal.usda.gov/nalt/858
https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=202422#null
Gramineae
Poaceae
graminées
grasses
http://artemide.art.uniroma2.it:8081/agrovoc/agrovoc/en/page/c_3354
http://lod.nal.usda.gov/nalt/2592
http://www.cabi.org/cabthesaurus/mtwdk.exe?k=default&l=60&w=12881&n=1&s=5&t=2
https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=40351#null
https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=4479&lvl=3&lin=f&keep=1&srchmode=1&unlock
Poales
http://artemide.art.uniroma2.it:8081/agrovoc/agrovoc/en/page/c_330269
http://lod.nal.usda.gov/nalt/135042
http://www.cabi.org/cabthesaurus/mtwdk.exe?k=default&l=60&w=268057&n=1&s=5&t=2
https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=846620#null
https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=38820&lvl=3&lin=f&keep=1&srchmode=1&unlock
Triticum
wheat
http://artemide.art.uniroma2.it:8081/agrovoc/agrovoc/en/page/c_7950
http://lod.nal.usda.gov/nalt/58978
http://www.cabi.org/cabthesaurus/mtwdk.exe?k=default&l=60&w=13090&n=1&s=5&t=2
https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=42236#null
https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=4564&lvl=3&p=has_linkout&p=blast_url&p=genome_blast&p=mapview&lin=f&keep=1&srchmode=3&unlock
Triticum sphaerococcum
Triticum sphaerococcum Percival
Triticum aestivum
TAxref identifie comme synonyme Triticum aestivum subsp. sphaerococcum et Triticum aestivum L.
NCBI identifie deux especes
http://artemide.art.uniroma2.it:8081/agrovoc/agrovoc/en/page/c_7951
http://lod.nal.usda.gov/nalt/66457
http://taxref.mnhn.fr/lod/name/127692
http://www.cabi.org/cabthesaurus/mtwdk.exe?k=default&l=60&w=16810&n=1&s=5&t=2
https://inpn.mnhn.fr/espece/cd_nom/127692
https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=42237#null
https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=4565&lvl=3&p=has_linkout&p=blast_url&p=genome_blast&p=mapview&lin=f&keep=1&srchmode=3&unlock
https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=77604&lvl=3&p=has_linkout&p=blast_url&p=genome_blast&p=mapview&lin=f&keep=1&srchmode=1&unlock
Triticum aestivum
Triticum aestivum L.
Triticum vulgare
Canadian hard winter wheat
blé barbu
blé ordinaire
blé tendre
common wheat
Triticum aestivum subsp aestivum
Bread wheat
froment
http://dbpedia.org/page/Common_wheat
http://taxref.mnhn.fr/lod/name/718429
https://inpn.mnhn.fr/espece/cd_nom/718429
https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=4565&lvl=3&p=has_linkout&p=blast_url&p=genome_blast&p=mapview&lin=f&keep=1&srchmode=1&unlock
Triticum aestivum subsp. compactum (Host) Mackey
Triticum compactum
Triticum compactum Host
Triticum aestivum subsp compactum
blé hérisson
ITIS reconnait ce taxon en tant que espece
attention dbpedia propose une espèce disparue le triticum compactum erinaceum
http://dbpedia.org/page/Triticum_compactum
http://taxref.mnhn.fr/lod/name/620964
http://www.cabi.org/cabthesaurus/mtwdk.exe?k=default&l=60&w=67034&n=1&s=5&t=2
https://inpn.mnhn.fr/espece/cd_nom/620964
https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=505611#null
https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=69993&lvl=3&p=has_linkout&p=blast_url&p=genome_blast&p=mapview&lin=f&keep=1&srchmode=1&unlock
Triticum aestivum subsp. macha (Dekapr. & A.M.Menabde) Mackey
Triticum macha
Triticum macha Dekapr. & Menabde
Triticum aestivum subsp. macha
http://www.cabi.org/cabthesaurus/mtwdk.exe?k=default&l=60&w=272617&n=1&s=5&t=2
https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=69994&lvl=3&p=has_linkout&p=blast_url&p=genome_blast&p=mapview&lin=f&keep=1&srchmode=1&unlock
Triticum aestivum subsp. spelta (L.) Thell.
Triticum spelta
Triticum spelta L.
blé des Gaulois
grand épeautre
Triticum aestivum subsp spelta
spelt
épeautre
ITIS reconnait ce taxon en tant que espece
le CABI contient les deux versions triticum spelta et triticum aestivum subsp spelta. Mon choix se porte sur la derniere formulation
http://artemide.art.uniroma2.it:8081/agrovoc/agrovoc/en/page/c_7957
http://dbpedia.org/page/Spelt
http://lod.nal.usda.gov/nalt/66462
http://taxref.mnhn.fr/lod/name/141957
http://www.cabi.org/cabthesaurus/mtwdk.exe?k=default&l=60&w=220213&n=1&s=5&t=2
http://www.cabi.org/cabthesaurus/mtwdk.exe?k=default&l=60&w=67039&n=1&s=5&t=2
https://inpn.mnhn.fr/espece/cd_nom/141957
https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=42243#null
https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Tree&id=58933&lvl=3&p=has_linkout&p=blast_url&p=genome_blast&p=mapview&lin=f&keep=1&srchmode=3&unlock
Triticum aestivum subsp. vavilovii (Tumanian) A.Love, nom. illeg.
Triticum vavilovi
Triticum vavilovii
Triticum vavilovii (Tumanian) Jakubz.
Triticum vavilovii Jakubz.
Vavilov's wheat
ITIS reconnait ce taxon en tant que espece
Probleme dans le choix du rang. NCBI décrit ce taxon comme une variété et non une sous espece. Par compte il y a aussi des variétés en dessous de vavilovii dans le Kew et GRIN. Bizarre
https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=506633#null
https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=69995&lvl=3&p=has_linkout&p=blast_url&p=genome_blast&p=mapview&lin=f&keep=1&srchmode=3&unlock
Triticum ispahanicum Heslot
Triticum ispahanicum
https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=506640#null
https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=376532&lvl=3&p=has_linkout&p=blast_url&p=genome_blast&p=mapview&lin=f&keep=1&srchmode=3&unlock
Triticum monococcum
einkorn
http://artemide.art.uniroma2.it:8081/agrovoc/agrovoc/en/page/c_7956
http://lod.nal.usda.gov/nalt/66458
http://taxref.mnhn.fr/lod/name/127771
http://www.cabi.org/cabthesaurus/mtwdk.exe?k=default&l=60&w=67037&n=1&s=5&t=2
https://inpn.mnhn.fr/espece/cd_nom/127771
https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=42241#null
https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=4568&lvl=3&lin=f&keep=1&srchmode=1&unlock
Triticum boeoticum
Triticum boeoticum Boiss.
Triticum monococcum subsp. aegilopoides (Link) Thell.
Triticum monococcum subsp. aegilopoides
engrain sauvage
wild einkorn
ITIS reconnait ce taxon en tant que espece
http://artemide.art.uniroma2.it:8081/agrovoc/agrovoc/en/page/c_7952
http://lod.nal.usda.gov/nalt/66465
http://www.cabi.org/cabthesaurus/mtwdk.exe?k=default&l=60&w=220214&n=1&s=5&t=2
http://www.cabi.org/cabthesaurus/mtwdk.exe?k=default&l=60&w=67032&n=1&s=5&t=2
https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=506798#null
https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=52163&lvl=3&p=has_linkout&p=blast_url&p=genome_blast&p=mapview&lin=f&keep=1&srchmode=3&unlock
blé-riz
petit épeautre
Triticum monococcum subsp. monococcum
engrain
http://dbpedia.org/page/Einkorn_wheat
http://lod.nal.usda.gov/nalt/36065
http://taxref.mnhn.fr/lod/name/718430
https://inpn.mnhn.fr/espece/cd_nom/718430
https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=408188&lvl=3&p=has_linkout&p=blast_url&p=genome_blast&p=mapview&lin=f&keep=1&srchmode=3&unlock
Triticum timopheevii (Zhuk.) Zhuk.
Timopheev's wheat
Zanduri wheat
Triticum timopheevii
sanduri wheat
http://dbpedia.org/page/Triticum_timopheevii
http://lod.nal.usda.gov/nalt/66459
http://www.cabi.org/cabthesaurus/mtwdk.exe?k=default&l=60&w=67040&n=1&s=5&t=2
https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=506630#null
https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=4570&lvl=3&lin=f&keep=1&srchmode=1&unlock
Triticum araraticum
Triticum araraticum Jakubz.
Triticum armeniacum
Triticum armeniacum (Jakubz.) Makush.
Triticum timopheevii subsp. armeniacum (Jakubz.) Slageren
Triticum timopheevii subsp. armeniacum
Armenian wild emmer
http://dbpedia.org/page/Triticum_araraticum
http://www.cabi.org/cabthesaurus/mtwdk.exe?k=default&l=60&w=67031&n=1&s=5&t=2
https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=103802&lvl=3&p=has_linkout&p=blast_url&p=genome_blast&p=mapview&lin=f&keep=1&srchmode=3&unlock
Triticum militinae
Triticum militinae Zhuk. & Migush.
Triticum timopheevii subsp. timopheevii
https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=58932&lvl=3&p=has_linkout&p=blast_url&p=genome_blast&p=mapview&lin=f&keep=1&srchmode=3&unlock
Triticum aethiopicum
Triticum aethiopicum Jakubz.
Triticum turgidum L.
Triticum turgidum
http://artemide.art.uniroma2.it:8081/agrovoc/agrovoc/en/page/c_7958
http://dbpedia.org/page/Triticum_aethiopicum
http://lod.nal.usda.gov/nalt/66460
http://taxref.mnhn.fr/lod/name/127827
http://www.cabi.org/cabthesaurus/mtwdk.exe?k=default&l=60&w=46626&n=1&s=5&t=2
https://inpn.mnhn.fr/espece/cd_nom/127827
https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=42245#null
https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=4571&lvl=3&p=has_linkout&p=blast_url&p=genome_blast&p=mapview&lin=f&keep=1&srchmode=3&unlock
Triticum carthlicum
Triticum carthlicum Nevski
Triticum turgidum subsp. carthlicum (Nevski) A.Love & D.Love
Triticum turgidum subsp. carthlicum
Persian black wheat
blé de Perse
ITIS reconnait ce taxon en tant que espece
http://dbpedia.org/page/Triticum_carthlicum
http://www.cabi.org/cabthesaurus/mtwdk.exe?k=default&l=60&w=67033&n=1&s=5&t=2
https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=506638#null
https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=295401&lvl=3&p=has_linkout&p=blast_url&p=genome_blast&p=mapview&lin=f&keep=1&srchmode=3&unlock
Triticum dicoccoides
Triticum dicoccoides (Koern. ex Asch. & Graebn.) Schweinf.
Triticum turgidum subsp. dicoccoides (Koern. ex Asch. & Graebn.) Thell.
Triticum turgidum subsp. dicoccoides
amidonnier sauvage
wild emmer wheat
ITIS reconnait ce taxon en tant que espece
taxon qui pose probleme du à une ambiguité pour son rang espece ou sous espece. Je décide de le transférer en sous espece car en dessous il n'y a que des variétés dans la taxonomie de NCBI.
http://artemide.art.uniroma2.it:8081/agrovoc/agrovoc/en/page/c_7953
http://lod.nal.usda.gov/nalt/42950
http://www.cabi.org/cabthesaurus/mtwdk.exe?k=default&l=60&w=67035&n=1&s=5&t=2
https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=522944#null
https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=85692&lvl=3&p=has_linkout&p=blast_url&p=genome_blast&p=mapview&lin=f&keep=1&srchmode=3&unlock
Triticum dicoccon
Triticum dicoccon Schrank ex Schuebl.
Triticum dicoccum
Triticum turgidum subsp. diccocum
Triticum turgidum subsp. dicoccon (Schrank ex Schuebl.) Thell.
Triticum turgidum subsp. dicoccum
Triticum turgidum subsp. dicoccum
épeautre de Tartarie
Triticum turgidum subsp. dicoccon
amidonnier
cultivated emmer wheat
emmer
ITIS connait ce taxon en tant que espece.
http://artemide.art.uniroma2.it:8081/agrovoc/agrovoc/en/page/c_7954
http://dbpedia.org/page/Emmer
http://lod.nal.usda.gov/nalt/66470
http://taxref.mnhn.fr/lod/name/621236
http://www.cabi.org/cabthesaurus/mtwdk.exe?k=default&l=60&w=67036&n=1&s=5&t=2
https://inpn.mnhn.fr/espece/cd_nom/621236
https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=506639#null
https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=49225&lvl=3&p=has_linkout&p=blast_url&p=genome_blast&p=mapview&lin=f&keep=1&srchmode=3&unlock
Triticum durum
Triticum durum Desf.
Triticum turgidum subsp. durum (Desf.) Husn.
blé d'Afrique
pasta wheat
Triticum turgidum subsp durum
blé dur
durum wheat
ITIS reconnait ce taxon en tant que espece
http://artemide.art.uniroma2.it:8081/agrovoc/agrovoc/en/page/c_7955
http://dbpedia.org/page/Durum
http://lod.nal.usda.gov/nalt/34929
http://taxref.mnhn.fr/lod/name/141978
http://www.cabi.org/cabthesaurus/mtwdk.exe?k=default&l=60&w=46625&n=1&s=5&t=2
https://inpn.mnhn.fr/espece/cd_nom/141978
https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=42240#null
https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=4567&lvl=3&p=has_linkout&p=blast_url&p=genome_blast&p=mapview&lin=f&keep=1&srchmode=3&unlock
Triticum karamyschevii Nevski
Triticum paleocolchicum
Triticum paleocolchicum Menabde
Triticum turgidum subsp. paleocolchicum A.Love & D.Love
Triticum turgidum subsp. paleocolchicum
https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=77605&lvl=3&p=has_linkout&p=blast_url&p=genome_blast&p=mapview&lin=f&keep=1&srchmode=3&unlock
Triticum polonicum
Triticum polonicum L.
Triticum turgidum subsp. polonicum (L.) Thell.
Triticum turgidum subsp. polonicum
blé de Pologne
polish wheat
ITIS reconnait ce taxon en tant que espece
http://www.cabi.org/cabthesaurus/mtwdk.exe?k=default&l=60&w=67038&n=1&s=5&t=2
le CABI contient deux versions triticum polonicum et triticum turgidum subsp polonicum. Mon choix se porte sur la derniere formulation
http://dbpedia.org/page/Triticum_polonicum
http://taxref.mnhn.fr/lod/name/620966
http://www.cabi.org/cabthesaurus/mtwdk.exe?k=default&l=60&w=220215&n=1&s=5&t=2
https://inpn.mnhn.fr/espece/cd_nom/620966
https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=505612#null
https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=77606&lvl=3&p=has_linkout&p=blast_url&p=genome_blast&p=mapview&lin=f&keep=1&srchmode=3&unlock
Triticum turanicum
Triticum turanicum Jakubz.
Triticum turgidum subsp. turanicum (Jakubz.) A.Love & D.Love
Triticum turgidum subsp. turanicum
blé de Khorasan
kamut
oriental wheat
ITIS reconnait ce taxon en tant que espce
http://dbpedia.org/page/Khorasan_wheat
https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=506631#null
https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=376534&lvl=3&p=has_linkout&p=blast_url&p=genome_blast&p=mapview&lin=f&keep=1&srchmode=3&unlock
Triticum turgidum
gros blé
Triticum turgidum subsp. turgidum
blé poulard
poulard wheat
rivet wheat
http://taxref.mnhn.fr/lod/name/718431
https://inpn.mnhn.fr/espece/cd_nom/718431
https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=357456&lvl=3&p=has_linkout&p=blast_url&p=genome_blast&p=mapview&lin=f&keep=1&srchmode=3&unlock
Triticum urartu Tumanian ex Gandilyan
Triticum urartu
red wild einkorn
http://dbpedia.org/page/Triticum_urartu
http://lod.nal.usda.gov/nalt/66461
http://www.cabi.org/cabthesaurus/mtwdk.exe?k=default&l=60&w=67041&n=1&s=5&t=2
https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=506632#null
https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=4572&lvl=3&p=has_linkout&p=blast_url&p=genome_blast&p=mapview&lin=f&keep=1&srchmode=3&unlock
Viridiplantae
Viridaeplantae
green plants
https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=846492#null
urn:absolute:ontology.irstea.fr/agronomicTaxon/ressource/goldStandard
Catherine Roussey
2017-11-15
http://ontology.irstea.fr/agronomictaxon/core
Agronomic Taxon Core
2017-11-15T11:40:51+01:00
created by Irstea. This ontology is a module that is based on skos vocabulary, linnean taxonomy ODP and classification ODP. The module was enriched by specialising taxonomic relationship based on the AOS ontology. Taxon ranks are linked to their agrovoc concepts. Some disjoint axioms between ranks were added.
construit manuellement par Catherine Roussey à partir du document https://fr.wikipedia.org/wiki/Taxonomie_du_bl%C3%A9.
Chaque espèce de blé proposé dans le tableau des espèces de blé a été validé à l'aide de European Wheat data base http://genbank.vurv.cz/ewdb/. Le nom du taxon et son rang a été validé en regardant d'abord le référentiel taxref de l'INPN dans un premier temps. S'il n'existait pas dans taxref alors la taxonomie du NCBI a été étudié.
Les liens vers les thesaurus agrovoc, NAL et CABI ont ensuite été ajoutés.
Les liens vers la base de données ITIS ont été ajoutés.
Les liens vers DBpedia ont été ajoutés. Attention DBpedia propose deux espèces qui ont disparues triticum zhukovsyi et triticum compactum erinaceum. Elles ne sont pas dans taxref. triticum zhukovsyi apparait dans European Wheat data base.
Les liens vers TAXREF-LD ont été ajouté.