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{- "prefLabel": "litter layer",
-
"synonym": [],-
"definition": [- "Refers to the ground layer of a forest or woodland where leaf litter or other plant matter accumulates"
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{- "prefLabel": "plant litter",
-
"synonym": [- "leaf litter",
- "duff",
- "litterfall",
- "soil litter",
- "tree litter"
],-
"definition": [- "Leaf litter is dead plant material, such as leaves, bark, needles, and twigs, that has fallen to the ground."
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
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- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
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"@context": {- "@vocab": "http://data.bioontology.org/metadata/",
- "prefLabel": "http://www.w3.org/2004/02/skos/core#prefLabel",
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- "definition": "http://www.w3.org/2004/02/skos/core#definition",
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}
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{- "prefLabel": "blood material",
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-
"definition": [- "ENVO bodily fluid classes differ from UBERON's treatment of bodily fluids. UBERON refers to the substance itself (\"S\"). We assert that UBERON's classes are the primary compositional component of the terms in ENVO (\"S material\"). Use of the ENVO terms is typically recommended when you wish to indicate that there may be other materials intermixed with S.",
- "A bodily fluid material which is composed primarily of blood, a bodily fluid composed of blood plasma and blood cells suspended within the plasma that circulates around the organism's body. Blood performs may important functions including the supplying of oxygen and nutrients, removal of waste, circulation of white blood cells, detection of antibodes, coagulation, transportation of antibodies and the regulation of pH and body temperature."
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FENVO_02000020",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
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- "mappings": "http://data.bioontology.org/metadata/Mapping",
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}
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"@context": {- "@vocab": "http://data.bioontology.org/metadata/",
- "prefLabel": "http://www.w3.org/2004/02/skos/core#prefLabel",
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}
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{- "prefLabel": "cerebrospinal fluid material",
-
"synonym": [- "CSF material",
- "Liquor cerebrospinalis"
],-
"definition": [- "ENVO bodily fluid classes differ from UBERON's treatment of bodily fluids. UBERON refers to the substance itself (\"S\"). We assert that UBERON's classes are the primary compositional component of the terms in ENVO (\"S material\"). Use of the ENVO terms is typically recommended when you wish to indicate that there may be other materials intermixed with S.",
- "A bodily fluid material which is composed primarily of cerebrospinal fluid, a clear bodily fluid that occupies the subarachnoid space and the ventricular system around and inside the brain. CSF is a clear bodily fluid that occupies the subarachnoid space and the ventricular system around and inside the brain."
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FENVO_02000029",
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- "notes": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FENVO_02000029/notes",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
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- "mappings": "http://data.bioontology.org/metadata/Mapping",
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}
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"@context": {- "@vocab": "http://data.bioontology.org/metadata/",
- "prefLabel": "http://www.w3.org/2004/02/skos/core#prefLabel",
- "synonym": "http://www.w3.org/2004/02/skos/core#altLabel",
- "definition": "http://www.w3.org/2004/02/skos/core#definition",
- "obsolete": "http://www.w3.org/2002/07/owl#deprecated",
- "semanticType": "http://bioportal.bioontology.org/ontologies/umls/hasSTY",
- "cui": "http://bioportal.bioontology.org/ontologies/umls/cui",
- "inScheme": "http://www.w3.org/2004/02/skos/core#inScheme",
- "created": "http://purl.org/dc/terms/created",
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}
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{- "prefLabel": "chyle material",
- "synonym": [ ],
-
"definition": [- "ENVO bodily fluid classes differ from UBERON's treatment of bodily fluids. UBERON refers to the substance itself (\"S\"). We assert that UBERON's classes are the primary compositional component of the terms in ENVO (\"S material\"). Use of the ENVO terms is typically recommended when you wish to indicate that there may be other materials intermixed with S.",
- "A bodily fluid material which is composed primarily of chyle, a bodily fluid consisting of a milky fluid consisting of lymph and emulsified fats; formed in the small intestine during digestion of ingested fats."
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
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- "mappings": "http://data.bioontology.org/metadata/Mapping",
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"@context": {- "@vocab": "http://data.bioontology.org/metadata/",
- "prefLabel": "http://www.w3.org/2004/02/skos/core#prefLabel",
- "synonym": "http://www.w3.org/2004/02/skos/core#altLabel",
- "definition": "http://www.w3.org/2004/02/skos/core#definition",
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- "cui": "http://bioportal.bioontology.org/ontologies/umls/cui",
- "inScheme": "http://www.w3.org/2004/02/skos/core#inScheme",
- "created": "http://purl.org/dc/terms/created",
- "modified": "http://purl.org/dc/terms/modified",
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}
},-
{- "prefLabel": "pleural effusion material",
- "synonym": [ ],
-
"definition": [- "A bodily fluid material which is composed primarily of a pleural effusion, a bodily fluid that is produced in excess and accumulates in the pleural cavity, the fluid-filled space that surrounds the lungs. Excessive amounts of such fluid can impair breathing by limiting the expansion of the lungs during inhalation."
],- "cui": [ ],
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FENVO_02000033",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/PCSM",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
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- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {- "@vocab": "http://data.bioontology.org/metadata/",
- "prefLabel": "http://www.w3.org/2004/02/skos/core#prefLabel",
- "synonym": "http://www.w3.org/2004/02/skos/core#altLabel",
- "definition": "http://www.w3.org/2004/02/skos/core#definition",
- "obsolete": "http://www.w3.org/2002/07/owl#deprecated",
- "semanticType": "http://bioportal.bioontology.org/ontologies/umls/hasSTY",
- "cui": "http://bioportal.bioontology.org/ontologies/umls/cui",
- "inScheme": "http://www.w3.org/2004/02/skos/core#inScheme",
- "created": "http://purl.org/dc/terms/created",
- "modified": "http://purl.org/dc/terms/modified",
- "@language": [ ]
}
},-
{- "prefLabel": "synovial fluid material",
- "synonym": [ ],
-
"definition": [- "ENVO bodily fluid classes differ from UBERON's treatment of bodily fluids. UBERON refers to the substance itself (\"S\"). We assert that UBERON's classes are the primary compositional component of the terms in ENVO (\"S material\"). Use of the ENVO terms is typically recommended when you wish to indicate that there may be other materials intermixed with S.",
- "A bodily fluid material which is composed primarily of synovial fluid, a bodily fluid secreted by the synovial membrane into the joint cavity to form a thin layer at the surface of cartilage."
],- "cui": [ ],
- "semanticType": [ ],
- "obsolete": false,
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- "modified": null,
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FENVO_02000039",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/PCSM",
- "children": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FENVO_02000039/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FENVO_02000039/parents",
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- "tree": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FENVO_02000039/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FENVO_02000039/notes",
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-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {- "@vocab": "http://data.bioontology.org/metadata/",
- "prefLabel": "http://www.w3.org/2004/02/skos/core#prefLabel",
- "synonym": "http://www.w3.org/2004/02/skos/core#altLabel",
- "definition": "http://www.w3.org/2004/02/skos/core#definition",
- "obsolete": "http://www.w3.org/2002/07/owl#deprecated",
- "semanticType": "http://bioportal.bioontology.org/ontologies/umls/hasSTY",
- "cui": "http://bioportal.bioontology.org/ontologies/umls/cui",
- "inScheme": "http://www.w3.org/2004/02/skos/core#inScheme",
- "created": "http://purl.org/dc/terms/created",
- "modified": "http://purl.org/dc/terms/modified",
- "@language": [ ]
}
},-
{- "prefLabel": "lymph material",
- "synonym": [ ],
-
"definition": [- "ENVO bodily fluid classes differ from UBERON's treatment of bodily fluids. UBERON refers to the substance itself (\"S\"). We assert that UBERON's classes are the primary compositional component of the terms in ENVO (\"S material\"). Use of the ENVO terms is typically recommended when you wish to indicate that there may be other materials intermixed with S.",
- "A bodily fluid material which is composed primarily of lymph, a bodily fluid consisting of a usually clear coagulable fluid that passes from intercellular spaces of body tissue into the lymphatic vessels, is discharged into the blood by way of the thoracic duct and right lymphatic duct, and resembles blood plasma in containing white blood cells and especially lymphocytes but normally few red blood cells and no platelets."
],- "cui": [ ],
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-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FENVO_02000041",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/PCSM",
- "children": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FENVO_02000041/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FENVO_02000041/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FENVO_02000041/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FENVO_02000041/ancestors",
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- "tree": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FENVO_02000041/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FENVO_02000041/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FENVO_02000041/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/PCSM?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FENVO_02000041",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {- "@vocab": "http://data.bioontology.org/metadata/",
- "prefLabel": "http://www.w3.org/2004/02/skos/core#prefLabel",
- "synonym": "http://www.w3.org/2004/02/skos/core#altLabel",
- "definition": "http://www.w3.org/2004/02/skos/core#definition",
- "obsolete": "http://www.w3.org/2002/07/owl#deprecated",
- "semanticType": "http://bioportal.bioontology.org/ontologies/umls/hasSTY",
- "cui": "http://bioportal.bioontology.org/ontologies/umls/cui",
- "inScheme": "http://www.w3.org/2004/02/skos/core#inScheme",
- "created": "http://purl.org/dc/terms/created",
- "modified": "http://purl.org/dc/terms/modified",
- "@language": [ ]
}
},-
{- "prefLabel": "immaterial anatomical entity",
-
"synonym": [- "immaterial physical anatomical entity"
],-
"definition": [- "Anatomical entity that has no mass."
],- "cui": [ ],
- "semanticType": [ ],
- "obsolete": false,
- "created": null,
- "modified": null,
- "memberOf": [ ],
- "inScheme": [ ],
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- "@type": "http://www.w3.org/2002/07/owl#Class",
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FUBERON_0000466",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/PCSM",
- "children": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FUBERON_0000466/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FUBERON_0000466/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FUBERON_0000466/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FUBERON_0000466/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FUBERON_0000466/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FUBERON_0000466/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FUBERON_0000466/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FUBERON_0000466/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/PCSM?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FUBERON_0000466",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {- "@vocab": "http://data.bioontology.org/metadata/",
- "prefLabel": "http://www.w3.org/2004/02/skos/core#prefLabel",
- "synonym": "http://www.w3.org/2004/02/skos/core#altLabel",
- "definition": "http://www.w3.org/2004/02/skos/core#definition",
- "obsolete": "http://www.w3.org/2002/07/owl#deprecated",
- "semanticType": "http://bioportal.bioontology.org/ontologies/umls/hasSTY",
- "cui": "http://bioportal.bioontology.org/ontologies/umls/cui",
- "inScheme": "http://www.w3.org/2004/02/skos/core#inScheme",
- "created": "http://purl.org/dc/terms/created",
- "modified": "http://purl.org/dc/terms/modified",
- "@language": [ ]
}
},-
{- "prefLabel": "phyllome",
-
"synonym": [- "filoma (Spanish, exact)",
- "フィロム、葉(的)器官 (Japanese, exact)"
],-
"definition": [- "A lateral plant organ (PO:0009008) produced by a shoot apical meristem (PO:0020148)."
],- "cui": [ ],
- "semanticType": [ ],
- "obsolete": false,
- "created": null,
- "modified": null,
- "memberOf": [ ],
- "inScheme": [ ],
- "@id": "http://purl.obolibrary.org/obo/PO_0006001",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPO_0006001",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/PCSM",
- "children": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPO_0006001/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPO_0006001/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPO_0006001/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPO_0006001/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPO_0006001/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPO_0006001/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPO_0006001/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPO_0006001/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/PCSM?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPO_0006001",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {- "@vocab": "http://data.bioontology.org/metadata/",
- "prefLabel": "http://www.w3.org/2004/02/skos/core#prefLabel",
- "synonym": "http://www.w3.org/2004/02/skos/core#altLabel",
- "definition": "http://www.w3.org/2004/02/skos/core#definition",
- "obsolete": "http://www.w3.org/2002/07/owl#deprecated",
- "semanticType": "http://bioportal.bioontology.org/ontologies/umls/hasSTY",
- "cui": "http://bioportal.bioontology.org/ontologies/umls/cui",
- "inScheme": "http://www.w3.org/2004/02/skos/core#inScheme",
- "created": "http://purl.org/dc/terms/created",
- "modified": "http://purl.org/dc/terms/modified",
- "@language": [ ]
}
},-
{- "prefLabel": "phyllome primordium",
-
"synonym": [- "phyllome primordia (exact, plural)",
- "portion of phyllome primordium tissue (exact)",
- "primordio del filoma (Spanish, exact)",
- "フィロム原基(可視的) (Japanese, exact)"
],-
"definition": [- "The transition from phyllome primordium to phyllome occurs when the first non-meristematic tissue develops begins to develop.",
- "A primordium (PO:0025127) that develops from a phyllome anlagen (PO:0025430) and is part of a shoot apex (PO:0000037) and is committed to the development of a phyllome (PO:0006001)."
],- "cui": [ ],
- "semanticType": [ ],
- "obsolete": false,
- "created": null,
- "modified": null,
- "memberOf": [ ],
- "inScheme": [ ],
- "@id": "http://purl.obolibrary.org/obo/PO_0025128",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPO_0025128",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/PCSM",
- "children": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPO_0025128/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPO_0025128/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPO_0025128/descendants",
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- "tree": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPO_0025128/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPO_0025128/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPO_0025128/mappings",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {- "@vocab": "http://data.bioontology.org/metadata/",
- "prefLabel": "http://www.w3.org/2004/02/skos/core#prefLabel",
- "synonym": "http://www.w3.org/2004/02/skos/core#altLabel",
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},-
{- "prefLabel": "material anatomical entity",
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-
"definition": [- "Anatomical entity that has mass."
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FUBERON_0000465",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/PCSM",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
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"@context": {- "@vocab": "http://data.bioontology.org/metadata/",
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}
},-
{- "prefLabel": "root primordium",
-
"synonym": [- "portion of root primordium tissue (exact)",
- "primordio de raíz (Spanish, exact)",
- "root primordia (exact, plural)",
- "根原基(可視的) (Japanese, exact)"
],-
"definition": [- "A root primordium may arise from cells of a pericycle (PO:0006203) in a root in most seed plant (pericyclic lateral root primordium; PO:0025492), from cells of an endodermis (PO:0000252) in ferns and some seed plants (non-pericyclic lateral root primordium: PO:0025493), or from cells of a shoot axis (PO:0025029), in the case of a basal root primordium (PO:0025479) or shoot-borne root primordium (PO:0025480). Transition from root primordium to root occurs with the formation of a root cap (PO:0020123), shortly after the development of a root apical meristem (PO:0020147).",
- "A primordium (PO:0025127) that develops from a root anlagen (PO:0025433) and is committed to the development of a root (PO:0009005)."
],- "cui": [ ],
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- "@id": "http://purl.obolibrary.org/obo/PO_0005029",
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPO_0005029",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/PCSM",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
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"@context": {- "@vocab": "http://data.bioontology.org/metadata/",
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},-
{- "prefLabel": "plant epidermis",
-
"synonym": [- "dermal tissue (exact)",
- "epidermal layer (exact)",
- "epidermides (exact, plural)",
- "epidermis (Spanish, exact)",
- "epidermises (exact, plural)",
- "portion of epidermal tissue (exact)",
- "表皮 (Japanese, exact)",
- "multiseriate epidermis (related)"
],-
"definition": [- "The epidermis can be composed of one or more layers of cells. In some species of vascular plants, the epidermis, which is a primary tissue, is replaced by periderm, which is secondary tissue, later in development. The epidermis can also include trichomes, stomatal pores, root hairs, and rhizoids.",
- "A portion of plant tissue (PO:0009007) composed of plant epidermal cells (PO:0004013) that develops from the protoderm (PO:0006210) and covers the surface of a plant structure (PO:0009011)."
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- "semanticType": [ ],
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPO_0005679",
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}
},-
{- "prefLabel": "root",
-
"synonym": [- "raíz (Spanish, exact)",
- "radices (exact, plural)",
- "radix (exact)",
- "根 (Japanese, exact)",
- "aerial root (narrow)",
- "climbing root (narrow)"
],-
"definition": [- "Roots function in the absorption of water and inorganic nutrients, anchoring the plant body to the substrate and supporting it, storage of food and nutrients, and vegetative reproduction. The roots of most vascular plant species enter into symbiosis with soil-borne microorganisms. Roots are usually positively geotropic and found underground, although there are many exceptions such as the aerial roots of orchids. Roots often form secondary thickening from the root lateral meristem (PO:0006308). Commonly thought of as one of the three basic parts of the plant body, along with the shoot axis (PO:0025029) and leaves (PO:0025034).",
- "A plant axis (PO:0025004) that lacks shoot axis nodes (PO:0005004) and usually grows indeterminately."
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/PCSM/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPO_0009005",
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}
}
]
}