{
- "id": "https://data.agroportal.lirmm.fr/ontologies/FOBI/submissions/3",
-
"submissionStatus": [- "RDF",
- "OBSOLETE",
- "INDEXED_PROPERTIES",
- "INDEXED_ALL_DATA",
- "METRICS",
- "RDF_LABELS",
- "UPLOADED",
- "ANNOTATOR",
- "DIFF",
- "INDEXED"
],- "submissionId": 3,
-
"ontology": {-
"administeredBy": [],- "acronym": "FOBI",
- "name": "Food-Biomarker Ontology",
-
"group": [],- "hasDomain": [ ],
- "viewingRestriction": "public",
- "viewOf": null,
- "reviews": [ ],
- "notes": [ ],
- "projects": [ ],
- "@id": "https://data.agroportal.lirmm.fr/ontologies/FOBI",
- "@type": "http://data.bioontology.org/metadata/Ontology",
-
"links": {- "submissions": "https://data.agroportal.lirmm.fr/ontologies/FOBI/submissions",
- "properties": "https://data.agroportal.lirmm.fr/ontologies/FOBI/properties",
- "classes": "https://data.agroportal.lirmm.fr/ontologies/FOBI/classes",
- "single_class": "https://data.agroportal.lirmm.fr/ontologies/FOBI/classes/{class_id}",
- "roots": "https://data.agroportal.lirmm.fr/ontologies/FOBI/classes/roots",
- "schemes": "https://data.agroportal.lirmm.fr/ontologies/FOBI/schemes",
- "collections": "https://data.agroportal.lirmm.fr/ontologies/FOBI/collections",
- "xl_labels": "https://data.agroportal.lirmm.fr/ontologies/FOBI/skos_xl_labels",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/FOBI/instances",
- "metrics": "https://data.agroportal.lirmm.fr/ontologies/FOBI/metrics",
- "reviews": "https://data.agroportal.lirmm.fr/ontologies/FOBI/reviews",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/FOBI/notes",
- "groups": "https://data.agroportal.lirmm.fr/ontologies/FOBI/groups",
- "categories": "https://data.agroportal.lirmm.fr/ontologies/FOBI/categories",
- "latest_submission": "https://data.agroportal.lirmm.fr/ontologies/FOBI/latest_submission",
- "projects": "https://data.agroportal.lirmm.fr/ontologies/FOBI/projects",
- "download": "https://data.agroportal.lirmm.fr/ontologies/FOBI/download",
- "views": "https://data.agroportal.lirmm.fr/ontologies/FOBI/views",
- "analytics": "https://data.agroportal.lirmm.fr/ontologies/FOBI/analytics",
- "agents": "https://data.agroportal.lirmm.fr/ontologies/FOBI/agents",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/FOBI/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/FOBI",
-
"@context": {- "submissions": "http://data.bioontology.org/metadata/OntologySubmission",
- "properties": "http://data.bioontology.org/metadata/Property",
- "classes": "http://www.w3.org/2002/07/owl#Class",
- "single_class": "http://www.w3.org/2002/07/owl#Class",
- "roots": "http://www.w3.org/2002/07/owl#Class",
- "schemes": "http://www.w3.org/2004/02/skos/core#ConceptScheme",
- "collections": "http://www.w3.org/2004/02/skos/core#Collection",
- "xl_labels": "http://www.w3.org/2008/05/skos-xl#Label",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "metrics": "http://data.bioontology.org/metadata/Metrics",
- "reviews": "http://data.bioontology.org/metadata/Review",
- "notes": "http://data.bioontology.org/metadata/Note",
- "groups": "http://data.bioontology.org/metadata/Group",
- "categories": "http://data.bioontology.org/metadata/Category",
- "latest_submission": "http://data.bioontology.org/metadata/OntologySubmission",
- "projects": "http://data.bioontology.org/metadata/Project",
- "download": "http://data.bioontology.org/metadata/Ontology",
- "views": "http://data.bioontology.org/metadata/Ontology",
- "analytics": "http://data.bioontology.org/metadata/Analytics",
- "agents": "http://xmlns.com/foaf/0.1/Agent",
- "mappings": "metadata/Mapping",
- "ui": "http://data.bioontology.org/metadata/Ontology"
}
},-
"@context": {}
},-
"metrics": {- "id": "https://data.agroportal.lirmm.fr/ontologies/FOBI/submissions/3/metrics",
- "classes": 1334,
- "maxChildCount": 74,
- "properties": 4,
- "classesWithMoreThan25Children": 5,
- "classesWithOneChild": 140,
- "individuals": 0,
- "maxDepth": 8,
- "classesWithNoDefinition": 1079,
- "averageChildCount": 3,
- "numberOfAxioms": null,
- "entities": null,
- "@id": "https://data.agroportal.lirmm.fr/ontologies/FOBI/submissions/3/metrics",
- "@type": "http://data.bioontology.org/metadata/Metrics",
-
"links": {},-
"@context": {- "@vocab": "http://data.bioontology.org/metadata/",
- "classes": "http://data.bioontology.org/metadata/classes",
- "individuals": "http://data.bioontology.org/metadata/individuals",
- "properties": "http://data.bioontology.org/metadata/properties",
- "maxDepth": "http://data.bioontology.org/metadata/maxDepth",
- "maxChildCount": "http://data.bioontology.org/metadata/maxChildCount",
- "averageChildCount": "http://data.bioontology.org/metadata/averageChildCount",
- "classesWithOneChild": "http://data.bioontology.org/metadata/classesWithOneChild",
- "classesWithMoreThan25Children": "http://data.bioontology.org/metadata/classesWithMoreThan25Children",
- "classesWithNoDefinition": "http://data.bioontology.org/metadata/classesWithNoDefinition",
- "numberOfAxioms": "http://omv.ontoware.org/2005/05/ontology#numberOfAxioms",
- "entities": "http://rdfs.org/ns/void#entities",
- "@language": "en"
}
},-
"naturalLanguage": [],- "classType": null,
- "hasOntologyLanguage": "OWL",
- "URI": "http://purl.obolibrary.org/obo/fobi.owl",
-
"hasContributor": [-
{- "id": "https://data.agroportal.lirmm.fr/Agents/21446490-7b57-013c-7b64-5254006dce65",
- "name": " Cristina Andrés-Lacueva",
- "creator": "https://data.agroportal.lirmm.fr/users/admin",
- "agentType": "person",
-
"identifiers": [],- "affiliations": [ ],
- "email": null,
- "homepage": null,
- "acronym": null,
- "@id": "https://data.agroportal.lirmm.fr/Agents/21446490-7b57-013c-7b64-5254006dce65",
- "@type": "http://xmlns.com/foaf/0.1/Agent",
-
"@context": {}
},-
{- "id": "https://data.agroportal.lirmm.fr/Agents/21294490-7b57-013c-7b64-5254006dce65",
- "name": "Raúl González-Domínguez",
- "creator": "https://data.agroportal.lirmm.fr/users/admin",
- "agentType": "person",
- "identifiers": [ ],
- "affiliations": [ ],
- "email": null,
- "homepage": null,
- "acronym": null,
- "@id": "https://data.agroportal.lirmm.fr/Agents/21294490-7b57-013c-7b64-5254006dce65",
- "@type": "http://xmlns.com/foaf/0.1/Agent",
-
"@context": {}
},-
{- "id": "https://data.agroportal.lirmm.fr/Agents/21349260-7b57-013c-7b64-5254006dce65",
- "name": " David S. Wishart",
- "creator": "https://data.agroportal.lirmm.fr/users/admin",
- "agentType": "person",
-
"identifiers": [],-
"affiliations": [-
{- "id": "https://data.agroportal.lirmm.fr/Agents/fb91b990-08ad-013d-bb15-5254006dce65",
- "name": "University of Alberta",
- "creator": "https://data.agroportal.lirmm.fr/users/ajonquet",
- "agentType": "organization",
-
"identifiers": [],- "affiliations": [ ],
- "email": null,
- "homepage": "http://ualberta.ca/",
- "acronym": "UAlberta",
- "@id": "https://data.agroportal.lirmm.fr/Agents/fb91b990-08ad-013d-bb15-5254006dce65",
- "@type": "http://xmlns.com/foaf/0.1/Agent",
-
"@context": {}
}
],- "email": null,
- "homepage": null,
- "acronym": null,
- "@id": "https://data.agroportal.lirmm.fr/Agents/21349260-7b57-013c-7b64-5254006dce65",
- "@type": "http://xmlns.com/foaf/0.1/Agent",
-
"@context": {}
},-
{- "id": "https://data.agroportal.lirmm.fr/Agents/2151bd60-7b57-013c-7b64-5254006dce65",
- "name": "Alex Sánchez-Pla",
- "creator": "https://data.agroportal.lirmm.fr/users/admin",
- "agentType": "person",
- "identifiers": [ ],
- "affiliations": [ ],
- "email": null,
- "homepage": null,
- "acronym": null,
- "@id": "https://data.agroportal.lirmm.fr/Agents/2151bd60-7b57-013c-7b64-5254006dce65",
- "@type": "http://xmlns.com/foaf/0.1/Agent",
-
"@context": {}
}
],-
"hasCreator": [-
{- "id": "https://data.agroportal.lirmm.fr/Agents/211e42c0-7b57-013c-7b64-5254006dce65",
- "name": "Pol Castellano Escuder",
- "creator": "https://data.agroportal.lirmm.fr/users/admin",
- "agentType": "person",
-
"identifiers": [],- "affiliations": [ ],
- "email": "polcaes@gmail.com",
- "homepage": null,
- "acronym": null,
- "@id": "https://data.agroportal.lirmm.fr/Agents/211e42c0-7b57-013c-7b64-5254006dce65",
- "@type": "http://xmlns.com/foaf/0.1/Agent",
-
"@context": {}
}
],- "version": "1.0.0",
- "released": "2022-05-03T23:00:53.000+02:00",
- "diffFilePath": "/srv/ontoportal/data/repository/FOBI/3/bubastis_diff.xml",
- "creationDate": "2022-05-03T23:00:57.000+02:00",
- "modificationDate": "2020-04-09T00:00:00.000+00:00",
- "copyrightHolder": null,
- "curatedBy": [ ],
- "endorsedBy": [ ],
- "fundedBy": [ ],
- "publisher": [ ],
- "translator": [ ],
- "uploadFilePath": "/srv/ontoportal/data/repository/FOBI/3/fobi.owl",
- "prefLabelProperty": "http://www.w3.org/2004/02/skos/core#prefLabel",
- "definitionProperty": "http://www.w3.org/2000/01/rdf-schema#comment",
- "synonymProperty": "http://www.w3.org/2004/02/skos/core#altLabel",
- "authorProperty": "http://purl.org/dc/elements/1.1/creator",
- "hierarchyProperty": null,
- "obsoleteProperty": null,
- "obsoleteParent": null,
- "createdProperty": null,
- "modifiedProperty": null,
- "versionIRI": null,
- "status": "alpha",
- "deprecated": false,
- "hasFormalityLevel": null,
- "hasOntologySyntax": "http://www.w3.org/ns/formats/OWL_XML",
- "isOfType": null,
- "identifier": [ ],
- "description": "FOBI (Food-Biomarker Ontology) is an ontology composed of two interconnected sub-ontologies. One is a ”Food Ontology” consisting of raw foods and multi-component foods while the second is a ”Biomarker Ontology” containing food intake biomarkers classified by their chemical classes. These two sub-ontologies are conceptually independent but interconnected by different properties. This allows data and information regarding foods and food biomarkers to be visualized in a bidirectional way, going from metabolomics to nutritional data or vice versa. Potential applications of this ontology include the annotation of foods and biomarkers using a well-defined and consistent nomenclature, the standardized reporting of metabolomics workflows (e.g. metabolite identification, experimental design), or the application of different enrichment analysis approaches to analyze nutrimetabolomic data.",
- "homepage": "https://github.com/pcastellanoescuder/FoodBiomarkerOntology",
- "documentation": "https://github.com/pcastellanoescuder/FoodBiomarkerOntology",
-
"notes": [- "Please cite FOBI project http://purl.obolibrary.org/obo/fobi where traditional citation is called for. However it is adequate that individual terms be attributed simply by use of the identifying PURL for the term, in projects that refer to them."
],- "keywords": [ ],
- "hiddenLabel": [ ],
- "alternative": [ ],
- "abstract": null,
-
"publication": [],- "hasLicense": null,
- "useGuidelines": null,
- "morePermissions": null,
- "valid": null,
- "curatedOn": [ ],
- "audience": null,
- "repository": "https://github.com/pcastellanoescuder/FoodBiomarkerOntology",
- "bugDatabase": "https://github.com/pcastellanoescuder/FoodBiomarkerOntology/issues",
- "mailingList": null,
- "toDoList": [ ],
- "award": [ ],
- "knownUsage": [ ],
- "designedForOntologyTask": [ ],
- "hasDomain": [ ],
- "coverage": null,
- "example": [ ],
- "conformsToKnowledgeRepresentationParadigm": null,
- "usedOntologyEngineeringMethodology": null,
-
"usedOntologyEngineeringTool": [],- "accrualMethod": [ ],
- "accrualPeriodicity": null,
- "accrualPolicy": null,
- "competencyQuestion": [ ],
- "wasGeneratedBy": [ ],
- "wasInvalidatedBy": [ ],
- "pullLocation": "http://purl.obolibrary.org/obo/fobi.owl",
- "isFormatOf": null,
- "hasFormat": [ ],
- "dataDump": "http://data.agroportal.lirmm.fr/ontologies/FOBI/download",
- "csvDump": "http://data.agroportal.lirmm.fr/ontologies/FOBI/download?download_format=csv",
- "uriLookupEndpoint": "http://data.agroportal.lirmm.fr/search?ontologies=FOBI&require_exact_match=true&q=",
- "openSearchDescription": "http://data.agroportal.lirmm.fr/search?ontologies=FOBI",
- "source": [ ],
-
"endpoint": [],-
"includedInDataCatalog": [],- "hasPriorVersion": "https://data.agroportal.lirmm.fr/ontologies/FOBI/submissions/2",
- "hasPart": [ ],
-
"ontologyRelatedTo": [],- "similarTo": [ ],
- "comesFromTheSameDomain": [ ],
- "isAlignedTo": [ ],
- "isBackwardCompatibleWith": [ ],
- "isIncompatibleWith": [ ],
- "hasDisparateModelling": [ ],
- "hasDisjunctionsWith": [ ],
- "generalizes": [ ],
- "explanationEvolution": [ ],
- "useImports": [ ],
- "usedBy": [ ],
- "workTranslation": [ ],
- "translationOfWork": [ ],
- "uriRegexPattern": "http://purl.obolibrary.org/obo/FOBI_[0-9]{7}",
- "preferredNamespaceUri": "http://purl.obolibrary.org/obo/FOBI_",
- "preferredNamespacePrefix": "fobi",
- "exampleIdentifier": "http://purl.obolibrary.org/obo/FOBI_040001",
- "keyClasses": [ ],
- "metadataVoc": [ ],
- "masterFileName": null,
- "associatedMedia": [ ],
- "depiction": [ ],
- "logo": null,
- "missingImports": [ ],
-
"contact": [],- "@id": "https://data.agroportal.lirmm.fr/ontologies/FOBI/submissions/3",
- "@type": "http://data.bioontology.org/metadata/OntologySubmission",
-
"links": {},-
"@context": {- "@vocab": "http://data.bioontology.org/metadata/",
- "submissionId": "http://data.bioontology.org/metadata/submissionId",
- "prefLabelProperty": "http://data.bioontology.org/metadata/prefLabelProperty",
- "definitionProperty": "http://data.bioontology.org/metadata/definitionProperty",
- "synonymProperty": "http://data.bioontology.org/metadata/synonymProperty",
- "authorProperty": "http://data.bioontology.org/metadata/authorProperty",
- "classType": "http://data.bioontology.org/metadata/classType",
- "hierarchyProperty": "http://data.bioontology.org/metadata/hierarchyProperty",
- "obsoleteProperty": "http://data.bioontology.org/metadata/obsoleteProperty",
- "obsoleteParent": "http://data.bioontology.org/metadata/obsoleteParent",
- "createdProperty": "http://data.bioontology.org/metadata/createdProperty",
- "modifiedProperty": "http://data.bioontology.org/metadata/modifiedProperty",
- "URI": "http://omv.ontoware.org/2005/05/ontology#URI",
- "versionIRI": "http://www.w3.org/2002/07/owl#versionIRI",
- "version": "http://omv.ontoware.org/2005/05/ontology#version",
- "status": "http://omv.ontoware.org/2005/05/ontology#status",
- "deprecated": "http://www.w3.org/2002/07/owl#deprecated",
- "hasOntologyLanguage": "http://omv.ontoware.org/2005/05/ontology#hasOntologyLanguage",
- "hasFormalityLevel": "http://omv.ontoware.org/2005/05/ontology#hasFormalityLevel",
- "hasOntologySyntax": "http://omv.ontoware.org/2005/05/ontology#hasOntologySyntax",
- "naturalLanguage": "http://omv.ontoware.org/2005/05/ontology#naturalLanguage",
- "isOfType": "http://omv.ontoware.org/2005/05/ontology#isOfType",
- "identifier": "http://purl.org/dc/terms/identifier",
- "description": "http://omv.ontoware.org/2005/05/ontology#description",
- "homepage": "http://xmlns.com/foaf/0.1/homepage",
- "documentation": "http://omv.ontoware.org/2005/05/ontology#documentation",
- "notes": "http://omv.ontoware.org/2005/05/ontology#notes",
- "keywords": "http://omv.ontoware.org/2005/05/ontology#keywords",
- "hiddenLabel": "http://www.w3.org/2004/02/skos/core#hiddenLabel",
- "alternative": "http://purl.org/dc/terms/alternative",
- "abstract": "http://purl.org/dc/terms/abstract",
- "publication": "http://data.bioontology.org/metadata/publication",
- "hasLicense": "http://omv.ontoware.org/2005/05/ontology#hasLicense",
- "useGuidelines": "http://creativecommons.org/ns#useGuidelines",
- "morePermissions": "http://creativecommons.org/ns#morePermissions",
- "copyrightHolder": "http://schema.org/copyrightHolder",
- "released": "http://data.bioontology.org/metadata/released",
- "valid": "http://purl.org/dc/terms/valid",
- "curatedOn": "http://purl.org/pav/curatedOn",
- "creationDate": "http://omv.ontoware.org/2005/05/ontology#creationDate",
- "modificationDate": "http://omv.ontoware.org/2005/05/ontology#modificationDate",
- "contact": "http://data.bioontology.org/metadata/contact",
- "hasCreator": "http://omv.ontoware.org/2005/05/ontology#hasCreator",
- "hasContributor": "http://omv.ontoware.org/2005/05/ontology#hasContributor",
- "curatedBy": "http://purl.org/pav/curatedBy",
- "publisher": "http://purl.org/dc/terms/publisher",
- "fundedBy": "http://xmlns.com/foaf/0.1/fundedBy",
- "endorsedBy": "http://omv.ontoware.org/2005/05/ontology#endorsedBy",
- "translator": "http://schema.org/translator",
- "audience": "http://purl.org/dc/terms/audience",
- "repository": "http://usefulinc.com/ns/doap#repository",
- "bugDatabase": "http://usefulinc.com/ns/doap#bugDatabase",
- "mailingList": "http://usefulinc.com/ns/doap#mailingList",
- "toDoList": "http://purl.org/vocommons/voaf#toDoList",
- "award": "http://schema.org/award",
- "knownUsage": "http://omv.ontoware.org/2005/05/ontology#knownUsage",
- "designedForOntologyTask": "http://omv.ontoware.org/2005/05/ontology#designedForOntologyTask",
- "hasDomain": "http://omv.ontoware.org/2005/05/ontology#hasDomain",
- "coverage": "http://purl.org/dc/terms/coverage",
- "example": "http://purl.org/vocab/vann/example",
- "conformsToKnowledgeRepresentationParadigm": "http://omv.ontoware.org/2005/05/ontology#conformsToKnowledgeRepresentationParadigm",
- "usedOntologyEngineeringMethodology": "http://omv.ontoware.org/2005/05/ontology#usedOntologyEngineeringMethodology",
- "usedOntologyEngineeringTool": "http://omv.ontoware.org/2005/05/ontology#usedOntologyEngineeringTool",
- "accrualMethod": "http://purl.org/dc/terms/accrualMethod",
- "accrualPeriodicity": "http://purl.org/dc/terms/accrualPeriodicity",
- "accrualPolicy": "http://purl.org/dc/terms/accrualPolicy",
- "competencyQuestion": "http://www.isibang.ac.in/ns/mod#competencyQuestion",
- "wasGeneratedBy": "http://www.w3.org/ns/prov#wasGeneratedBy",
- "wasInvalidatedBy": "http://www.w3.org/ns/prov#wasInvalidatedBy",
- "pullLocation": "http://data.bioontology.org/metadata/pullLocation",
- "isFormatOf": "http://purl.org/dc/terms/isFormatOf",
- "hasFormat": "http://purl.org/dc/terms/hasFormat",
- "dataDump": "http://rdfs.org/ns/void#dataDump",
- "csvDump": "http://data.bioontology.org/metadata/csvDump",
- "uriLookupEndpoint": "http://rdfs.org/ns/void#uriLookupEndpoint",
- "openSearchDescription": "http://rdfs.org/ns/void#openSearchDescription",
- "source": "http://purl.org/dc/terms/source",
- "endpoint": "http://www.w3.org/ns/sparql-service-description#endpoint",
- "includedInDataCatalog": "http://schema.org/includedInDataCatalog",
- "hasPriorVersion": "http://omv.ontoware.org/2005/05/ontology#hasPriorVersion",
- "hasPart": "http://purl.org/dc/terms/hasPart",
- "ontologyRelatedTo": "http://kannel.open.ac.uk/ontology#ontologyRelatedTo",
- "similarTo": "http://kannel.open.ac.uk/ontology#similarTo",
- "comesFromTheSameDomain": "http://kannel.open.ac.uk/ontology#comesFromTheSameDomain",
- "isAlignedTo": "http://kannel.open.ac.uk/ontology#isAlignedTo",
- "isBackwardCompatibleWith": "http://omv.ontoware.org/2005/05/ontology#isBackwardCompatibleWith",
- "isIncompatibleWith": "http://omv.ontoware.org/2005/05/ontology#isIncompatibleWith",
- "hasDisparateModelling": "http://kannel.open.ac.uk/ontology#hasDisparateModelling",
- "hasDisjunctionsWith": "http://purl.org/vocommons/voaf#hasDisjunctionsWith",
- "generalizes": "http://purl.org/vocommons/voaf#generalizes",
- "explanationEvolution": "http://kannel.open.ac.uk/ontology#explanationEvolution",
- "useImports": "http://omv.ontoware.org/2005/05/ontology#useImports",
- "usedBy": "http://purl.org/vocommons/voaf#usedBy",
- "workTranslation": "http://schema.org/workTranslation",
- "translationOfWork": "http://schema.org/translationOfWork",
- "uriRegexPattern": "http://rdfs.org/ns/void#uriRegexPattern",
- "preferredNamespaceUri": "http://purl.org/vocab/vann/preferredNamespaceUri",
- "preferredNamespacePrefix": "http://purl.org/vocab/vann/preferredNamespacePrefix",
- "exampleIdentifier": "http://identifiers.org/idot/exampleIdentifier",
- "keyClasses": "http://omv.ontoware.org/2005/05/ontology#keyClasses",
- "metadataVoc": "http://purl.org/vocommons/voaf#metadataVoc",
- "uploadFilePath": "http://data.bioontology.org/metadata/uploadFilePath",
- "diffFilePath": "http://data.bioontology.org/metadata/diffFilePath",
- "masterFileName": "http://data.bioontology.org/metadata/masterFileName",
- "associatedMedia": "http://schema.org/associatedMedia",
- "depiction": "http://xmlns.com/foaf/0.1/depiction",
- "logo": "http://xmlns.com/foaf/0.1/logo",
- "metrics": "http://data.bioontology.org/metadata/metrics",
- "submissionStatus": "http://data.bioontology.org/metadata/submissionStatus",
- "missingImports": "http://data.bioontology.org/metadata/missingImports",
- "ontology": "http://data.bioontology.org/metadata/ontology",
- "@language": "en"
}
}