format-version: 1.2 date: 07:08:2009 11:34 saved-by: RSHRESTHA auto-generated-by: OBO-Edit 2.0 default-namespace: multicrop passport ontology namespace-id-rule: * CO_020:$sequence(7,0,9999999)$ [Term] id: CO_020:0000000 name: multicrop passport ontology comment: release date: July 31, 2007\nversion: 1.0. Adapted from FAO/Bioversity Multi-Crop Passport Descriptors, 2004\ncoverage: Multi-Crop Passport Descriptors\ncreator: Jeffrey Detras, Tom Hazekamp and Richard Bruskiewich\npublisher: Bioversity International and IRRI under the Generation Challenge Program xref: GCPDomainModel:CO_000:0000165 [Term] id: CO_020:0000003 name: collecting number comment: Original number assigned by the collector(s) of the sample, normally composed of the name or initials of the collector(s) followed by a number. This item is essential for identifying duplicates held in different collections. It should be unique and always accompany subsamples wherever they are sent. synonym: "(COLLNUMB)" EXACT [] xref: GCP germplasm ontology:CO_010:0000014 is_a: CO_020:0000079 ! germplasm identifier descriptor [Term] id: CO_020:0000004 name: collecting institute code comment: Code of the Institute collecting the sample. If the holding institute has collected the material, the collecting institute code (COLLCODE) should be the same as the holding institute code (INSTCODE). Follows INSTCODE standard. synonym: "(COLLCODE)" EXACT [] xref: GCP germplasm ontology:CO_010:0000024 is_a: CO_020:0000088 ! institute code [Term] id: CO_020:0000005 name: genus comment: Genus name for taxon. Initial Uppercase letter required. synonym: "(GENUS)" EXACT [] xref: GCP germplasm ontology:CO_010:0000042 xref: GCPDomainModel:CO_000:0000154 is_a: CO_020:0000081 ! taxonomy descriptor [Term] id: CO_020:0000006 name: species comment: Specific epithet portion of the scientific name in lowercase letters plus authority1. Following abbreviation is allowed: sp. synonym: "(SPECIES)" EXACT [] xref: GCP germplasm ontology:CO_010:0000039 xref: GCPDomainModel:CO_000:0000205 is_a: CO_020:0000081 ! taxonomy descriptor [Term] id: CO_020:0000007 name: species authority comment: Provide the authority for the species name. synonym: "(SPAUTHOR)" EXACT [] xref: GCP germplasm ontology:CO_010:0000157 is_a: CO_020:0000081 ! taxonomy descriptor [Term] id: CO_020:0000008 name: subtaxa comment: Subtaxa can be used to store any additional taxonomic identifier plus authority1. Following abbreviations are allowed: ssp. (for subspecies); var. (for variety); convar. (for convariety); f. (for form). synonym: "(SUBTAXA)" EXACT [] synonym: "Subspecies" RELATED [] xref: GCP germplasm ontology:CO_010:0000040 xref: GCPDomainModel:CO_000:0000151 is_a: CO_020:0000081 ! taxonomy descriptor [Term] id: CO_020:0000009 name: subtaxa authority comment: Provide the subtaxa authority at the most detailed taxonomic level. synonym: "(SUBTAUTHOR)" EXACT [] xref: GCP germplasm ontology:CO_010:0000158 is_a: CO_020:0000081 ! taxonomy descriptor [Term] id: CO_020:0000010 name: common crop name comment: Name of the crop in colloquial language, preferably English (i.e. 'malting barley, 'cauliflower', or 'white cabbage') synonym: "(CROPNAME)" EXACT [] xref: GCP germplasm ontology:CO_010:0000153 is_a: CO_020:0000081 ! taxonomy descriptor [Term] id: CO_020:0000011 name: accession name comment: Either a registered or other formal designation given to the accession. First letter uppercase. Multiple names separated with semicolon. synonym: "(ACCENAME)" EXACT [] xref: GCP germplasm ontology:CO_010:0000045 is_a: CO_020:0000079 ! germplasm identifier descriptor [Term] id: CO_020:0000012 name: acquisition date comment: Date on which the accession entered the collection where YYYY is the year, MM is the month and DD is the day. Missing data (MM or DD) should be indicated with hyphens. Leading zeros are required. [DDMMYYYY]. synonym: "(ACQDATE)" EXACT [] xref: GCP germplasm ontology:CO_010:0000057 is_a: CO_020:0000086 ! date descriptor [Term] id: CO_020:0000013 name: country of origin comment: Name of the country in which the sample was originally collected or derived. Use the ISO 3166 extended codes, (i.e. current and old 3 letter ISO 3166 country codes). synonym: "(ORIGCTY)" EXACT [] xref: GCP germplasm ontology:CO_010:0000010 xref: GCPDomainModel:CO_000:0000173 is_a: CO_020:0000087 ! location descriptor [Term] id: CO_020:0000014 name: location of collecting site comment: Location information below the country level that describes where the accession was collected starting with the most detailed information. Might include the distance in kilometers and direction from the nearest town, village or map grid reference point, (e.g. CURITIBA 7S, PARANA means 7 km south of Curitiba in the state of Parana). synonym: "(COLLSITE)" EXACT [] xref: GCP germplasm ontology:CO_010:0000028 is_a: CO_020:0000087 ! location descriptor [Term] id: CO_020:0000015 name: latitude of collecting site comment: Degrees and minutes followed by N (North) or S (South) (e.g. 1030S). Missing data (minutes) should be indicated with hyphen (e.g. 10 S). synonym: "(LATITUDE)" EXACT [] xref: GCP germplasm ontology:CO_010:0000008 is_a: CO_020:0000087 ! location descriptor [Term] id: CO_020:0000016 name: longitude of collecting site comment: Degrees and minutes followed by E (East) or W (West) (e.g. 07625W). Missing data (minutes) should be indicated with hyphen (e.g. 076 W). synonym: "(LONGITUDE)" EXACT [] xref: GCP germplasm ontology:CO_010:0000026 is_a: CO_020:0000087 ! location descriptor [Term] id: CO_020:0000017 name: elevation of collecting site comment: Elevation of collecting site expressed in meters above sea level. Negative values allowed. Format: [m asl]. synonym: "(ELEVATION)" EXACT [] xref: GCP germplasm ontology:CO_010:0000004 is_a: CO_020:0000087 ! location descriptor [Term] id: CO_020:0000018 name: collecting date of sample comment: Collecting date of the sample where YYYY is the year, MM is the month and DD is the day. Missing data (MM or DD) should be indicated with hyphens. Leading zeros are required. Format: [DDMMYYYY]. synonym: "(COLLDATE)" EXACT [] xref: GCP germplasm ontology:CO_010:0000030 is_a: CO_020:0000086 ! date descriptor [Term] id: CO_020:0000019 name: breeding institute code comment: Institute code of the institute that has bred the material. If the holding institute has bred the material, the breeding institute code (BREDCODE) should be the same as the holding institute code (INSTCODE). Follows INSTCODE standard. synonym: "(BREDCODE)" EXACT [] xref: GCP germplasm ontology:CO_010:0000155 is_a: CO_020:0000088 ! institute code [Term] id: CO_020:0000020 name: biological status of accession comment: The coding scheme proposed can be used at 3 different levels of detail: either by using the general codes (in boldface) such as 100, 200, 300, 400 or by using the more specific codes such as 110, 120 etc. synonym: "(SAMPSTAT)" EXACT [] xref: GCP germplasm ontology:CO_010:0000022 xref: GCPDomainModel:CO_000:0000138 is_a: CO_020:0000074 ! multicrop passport descriptor [Term] id: CO_020:0000021 name: ancestral data comment: Information about either pedigree or other description of ancestral information (i.e. parent variety in case of mutant or selection). For example a pedigree 'Hanna/7*Atlas//Turk/8*Atlas' or a description 'mutation found in Hanna', 'selection from Irene' or 'cross involving amongst others Hanna and Irene'. synonym: "(ANCEST)" EXACT [] xref: GCP germplasm ontology:CO_010:0000152 is_a: CO_020:0000082 ! origin descriptor [Term] id: CO_020:0000022 name: collecting or acquisition source comment: The coding scheme proposed can be used at 2 different levels of detail: Either by using the global codes such as 1, 2, 3, 4 or by using the more detailed coding such as 1.1, 1.2, 1.3 etc. synonym: "(COLLSRC)" EXACT [] xref: GCP germplasm ontology:CO_010:0000005 is_a: CO_020:0000087 ! location descriptor [Term] id: CO_020:0000023 name: donor institute code comment: Code for the donor institute. Follows INSTCODE standard. synonym: "(DONORCODE)" EXACT [] xref: GCP germplasm ontology:CO_010:0000156 is_a: CO_020:0000088 ! institute code [Term] id: CO_020:0000024 name: donor accession number comment: Number assigned to an accession by the donor. Follows ACCENUMB standard. synonym: "(DONORNUMB)" EXACT [] xref: GCP germplasm ontology:CO_010:0000059 is_a: CO_020:0000089 ! accession number [Term] id: CO_020:0000025 name: other identification numbers associated with the accession comment: Other identification (numbers) associated with the accession (OTHERNUMB).\nAny other identification (numbers) known to exist in other collections for this accession. Use the following system: INSTCODE:ACCENUMB;INSTCODE:ACCENUMB; INSTCODE and ACCENUMB follow the standard described above and are separated by a colon. Pairs of INSTCODE and ACCENUMB are separated by a semicolon without space. When the institute is not known, the number should be preceded by a colon. synonym: "(OTHERNUMB)" EXACT [] xref: GCP germplasm ontology:CO_010:0000061 is_a: CO_020:0000079 ! germplasm identifier descriptor [Term] id: CO_020:0000026 name: location of safety duplicates comment: Code of the institute where a safety duplicate of the accession is maintained. Follows INSTCODE standard. synonym: "(DUPLSITE)" EXACT [] xref: GCP germplasm ontology:CO_010:0000126 is_a: CO_020:0000088 ! institute code [Term] id: CO_020:0000027 name: type of germplasm storage comment: If germplasm is maintained under different types of storage, multiple choices are allowed, separated by a semicolon (e.g. 20;30). (Refer to FAO/IPGRI Genebank Standards 1994 for details on storage type.). synonym: "(STORAGE)" EXACT [] xref: GCP germplasm ontology:CO_010:0000137 is_a: CO_020:0000074 ! multicrop passport descriptor [Term] id: CO_020:0000028 name: remarks comment: The remarks field is used to add notes or to elaborate on descriptors with value 99 or 999 (=Other). Prefix remarks with the field name they refer to and a colon (e.g. COLLSRC:riverside). Separate remarks referring to different fields are separated by semicolons without space. synonym: "(REMARKS)" EXACT [] xref: GCP germplasm ontology:CO_010:0000051 is_a: CO_020:0000074 ! multicrop passport descriptor [Term] id: CO_020:0000029 name: 100 wild xref: GCP germplasm ontology:CO_010:0000090 is_a: CO_020:0000075 ! BiologicalStatusOfAccessionCode [Term] id: CO_020:0000030 name: 110 natural xref: GCP germplasm ontology:CO_010:0000195 is_a: CO_020:0000029 ! 100 wild [Term] id: CO_020:0000031 name: 120 semi-natural or wild xref: GCP germplasm ontology:CO_010:0000196 is_a: CO_020:0000029 ! 100 wild [Term] id: CO_020:0000032 name: 200 weedy xref: GCP germplasm ontology:CO_010:0000091 is_a: CO_020:0000075 ! BiologicalStatusOfAccessionCode [Term] id: CO_020:0000033 name: 300 traditional cultivar or landrace synonym: "primitive cultivar" EXACT [] xref: GCP germplasm ontology:CO_010:0000092 is_a: CO_020:0000075 ! BiologicalStatusOfAccessionCode [Term] id: CO_020:0000034 name: 400 breeding or research material xref: GCP germplasm ontology:CO_010:0000159 is_a: CO_020:0000075 ! BiologicalStatusOfAccessionCode [Term] id: CO_020:0000035 name: 410 breeder's line xref: GCP germplasm ontology:CO_010:0000093 is_a: CO_020:0000034 ! 400 breeding or research material [Term] id: CO_020:0000036 name: 411 synthetic population xref: GCP germplasm ontology:CO_010:0000164 is_a: CO_020:0000035 ! 410 breeder's line [Term] id: CO_020:0000037 name: 412 hybrid xref: GCP germplasm ontology:CO_010:0000161 is_a: CO_020:0000035 ! 410 breeder's line [Term] id: CO_020:0000038 name: 413 founder stock or base population xref: GCP germplasm ontology:CO_010:0000160 is_a: CO_020:0000035 ! 410 breeder's line [Term] id: CO_020:0000039 name: 414 inbred line (parent of hybrid cultivar) xref: GCP germplasm ontology:CO_010:0000162 is_a: CO_020:0000035 ! 410 breeder's line [Term] id: CO_020:0000040 name: 415 segregating population xref: GCP germplasm ontology:CO_010:0000163 is_a: CO_020:0000035 ! 410 breeder's line [Term] id: CO_020:0000041 name: 420 mutant or genetic stock xref: GCP germplasm ontology:CO_010:0000194 is_a: CO_020:0000034 ! 400 breeding or research material [Term] id: CO_020:0000042 name: 500 advanced or improved cultivar xref: GCP germplasm ontology:CO_010:0000094 is_a: CO_020:0000075 ! BiologicalStatusOfAccessionCode [Term] id: CO_020:0000043 name: 999 other biological status of accession comment: Elaborate in REMARKS field. xref: GCP germplasm ontology:CO_010:0000101 is_a: CO_020:0000075 ! BiologicalStatusOfAccessionCode [Term] id: CO_020:0000044 name: 10 wild habitat xref: GCP germplasm ontology:CO_010:0000066 is_a: CO_020:0000076 ! CollectingOrAcquisitionSourceCode [Term] id: CO_020:0000045 name: 11 forest or woodland xref: GCP germplasm ontology:CO_010:0000211 is_a: CO_020:0000044 ! 10 wild habitat [Term] id: CO_020:0000046 name: 12 shrubland xref: GCP germplasm ontology:CO_010:0000213 is_a: CO_020:0000044 ! 10 wild habitat [Term] id: CO_020:0000047 name: 13 grassland xref: GCP germplasm ontology:CO_010:0000212 is_a: CO_020:0000044 ! 10 wild habitat [Term] id: CO_020:0000048 name: 14 desert or tundra xref: GCP germplasm ontology:CO_010:0000210 is_a: CO_020:0000044 ! 10 wild habitat [Term] id: CO_020:0000049 name: 15 aquatic habitat xref: GCP germplasm ontology:CO_010:0000209 is_a: CO_020:0000044 ! 10 wild habitat [Term] id: CO_020:0000050 name: 20 farm or cultivated habitat xref: GCP germplasm ontology:CO_010:0000067 is_a: CO_020:0000076 ! CollectingOrAcquisitionSourceCode [Term] id: CO_020:0000051 name: 21 field xref: GCP germplasm ontology:CO_010:0000202 is_a: CO_020:0000050 ! 20 farm or cultivated habitat [Term] id: CO_020:0000052 name: 22 orchard xref: GCP germplasm ontology:CO_010:0000203 is_a: CO_020:0000050 ! 20 farm or cultivated habitat [Term] id: CO_020:0000053 name: 23 backyard, kitchen, or home garden (urban, peri-urban or rural) xref: GCP germplasm ontology:CO_010:0000199 is_a: CO_020:0000050 ! 20 farm or cultivated habitat [Term] id: CO_020:0000054 name: 24 fallow land xref: GCP germplasm ontology:CO_010:0000200 is_a: CO_020:0000050 ! 20 farm or cultivated habitat [Term] id: CO_020:0000055 name: 25 pasture xref: GCP germplasm ontology:CO_010:0000205 is_a: CO_020:0000050 ! 20 farm or cultivated habitat [Term] id: CO_020:0000056 name: 26 farm store xref: GCP germplasm ontology:CO_010:0000201 is_a: CO_020:0000050 ! 20 farm or cultivated habitat [Term] id: CO_020:0000057 name: 27 threshing floor xref: GCP germplasm ontology:CO_010:0000206 is_a: CO_020:0000050 ! 20 farm or cultivated habitat [Term] id: CO_020:0000058 name: 28 park xref: GCP germplasm ontology:CO_010:0000204 is_a: CO_020:0000050 ! 20 farm or cultivated habitat [Term] id: CO_020:0000059 name: 30 market or shop xref: GCP germplasm ontology:CO_010:0000068 is_a: CO_020:0000076 ! CollectingOrAcquisitionSourceCode [Term] id: CO_020:0000060 name: 40 institute, experimental station, research organization, genebank xref: GCP germplasm ontology:CO_010:0000069 is_a: CO_020:0000076 ! CollectingOrAcquisitionSourceCode [Term] id: CO_020:0000061 name: 50 seed company xref: GCP germplasm ontology:CO_010:0000197 is_a: CO_020:0000076 ! CollectingOrAcquisitionSourceCode [Term] id: CO_020:0000062 name: 60 weedy, disturbed or ruderal habitat xref: GCP germplasm ontology:CO_010:0000198 is_a: CO_020:0000076 ! CollectingOrAcquisitionSourceCode [Term] id: CO_020:0000063 name: 61 roadside xref: GCP germplasm ontology:CO_010:0000208 is_a: CO_020:0000062 ! 60 weedy, disturbed or ruderal habitat [Term] id: CO_020:0000064 name: 62 field margin xref: GCP germplasm ontology:CO_010:0000207 is_a: CO_020:0000062 ! 60 weedy, disturbed or ruderal habitat [Term] id: CO_020:0000065 name: MultiCropPassportDescriptorCode comment: The coded values for some descriptors. is_a: CO_020:0000000 ! multicrop passport ontology [Term] id: CO_020:0000066 name: 10 seed collection xref: GCP germplasm ontology:CO_010:0000146 is_a: CO_020:0000078 ! TypeOfGermplasmStorageCode [Term] id: CO_020:0000067 name: 11short term xref: GCP germplasm ontology:CO_010:0000219 is_a: CO_020:0000066 ! 10 seed collection [Term] id: CO_020:0000068 name: 12 medium term xref: GCP germplasm ontology:CO_010:0000218 is_a: CO_020:0000066 ! 10 seed collection [Term] id: CO_020:0000069 name: 13 long term xref: GCP germplasm ontology:CO_010:0000217 is_a: CO_020:0000066 ! 10 seed collection [Term] id: CO_020:0000070 name: 20 field collection xref: GCP germplasm ontology:CO_010:0000144 is_a: CO_020:0000078 ! TypeOfGermplasmStorageCode [Term] id: CO_020:0000071 name: 30 in vitro collection comment: Has slow growth. xref: GCP germplasm ontology:CO_010:0000145 is_a: CO_020:0000078 ! TypeOfGermplasmStorageCode [Term] id: CO_020:0000072 name: 40 cryopreserved collection xref: GCP germplasm ontology:CO_010:0000216 is_a: CO_020:0000078 ! TypeOfGermplasmStorageCode [Term] id: CO_020:0000073 name: 99 other type of germplasm storage comment: Elaborate in REMARKS field. xref: GCP germplasm ontology:CO_010:0000147 is_a: CO_020:0000078 ! TypeOfGermplasmStorageCode [Term] id: CO_020:0000074 name: multicrop passport descriptor comment: The list of multi-crop passport descriptors is developed jointly by Bioversity (formerly IPGRI) and FAO to provide international standards to facilitate germplasm passport information exchange. These descriptors aim to be compatible with Bioversity crop descriptor lists and with the descriptors used for the FAO World Information and Early Warning System (WIEWS) on plant genetic resources (PGR). For each multi-crop passport descriptor, a brief explanation of content, coding scheme and suggested fieldname (in parentheses) is provided to assist in the computerized exchange of this type of data. It is recognized that networks or groups of users may want to further expand this GCP.mcpd List to meet their specific needs. As long as these additions allow for an easy conversion to the format proposed in the multi-crop passport descriptors, basic passport data can be exchanged worldwide in a consistent manner. AUTHORS: Adriana Alercia, Stefano Diulgheroff, Thomas Metz YEAR:2001 is_a: CO_020:0000000 ! multicrop passport ontology [Term] id: CO_020:0000075 name: BiologicalStatusOfAccessionCode xref: GCP germplasm ontology:CO_010:0000089 xref: GCPDomainModel:CO_000:0000071 is_a: CO_020:0000065 ! MultiCropPassportDescriptorCode relationship: CO_020:0000001 CO_020:0000020 ! biological status of accession [Term] id: CO_020:0000076 name: CollectingOrAcquisitionSourceCode xref: GCP germplasm ontology:CO_010:0000065 xref: GCPDomainModel:CO_000:0000136 is_a: CO_020:0000065 ! MultiCropPassportDescriptorCode relationship: CO_020:0000001 CO_020:0000022 ! collecting or acquisition source [Term] id: CO_020:0000077 name: 99 other collecting or acquisition source comment: Elaborate in REMARKS field. xref: GCP germplasm ontology:CO_010:0000102 is_a: CO_020:0000076 ! CollectingOrAcquisitionSourceCode [Term] id: CO_020:0000078 name: TypeOfGermplasmStorageCode xref: GCP germplasm ontology:CO_010:0000143 is_a: CO_020:0000065 ! MultiCropPassportDescriptorCode relationship: CO_020:0000001 CO_020:0000027 ! type of germplasm storage [Term] id: CO_020:0000079 name: germplasm identifier descriptor is_a: CO_020:0000074 ! multicrop passport descriptor [Term] id: CO_020:0000080 name: institute descriptor is_a: CO_020:0000074 ! multicrop passport descriptor [Term] id: CO_020:0000081 name: taxonomy descriptor is_a: CO_020:0000074 ! multicrop passport descriptor [Term] id: CO_020:0000082 name: origin descriptor is_a: CO_020:0000074 ! multicrop passport descriptor [Term] id: CO_020:0000084 name: InstituteCode xref: GCP germplasm ontology:CO_010:0000215 is_a: CO_020:0000065 ! MultiCropPassportDescriptorCode relationship: CO_020:0000001 CO_020:0000088 ! institute code [Term] id: CO_020:0000085 name: CountryOfOriginCode xref: GCP germplasm ontology:CO_010:0000214 is_a: CO_020:0000065 ! MultiCropPassportDescriptorCode relationship: CO_020:0000001 CO_020:0000013 ! country of origin [Term] id: CO_020:0000086 name: date descriptor is_a: CO_020:0000074 ! multicrop passport descriptor [Term] id: CO_020:0000087 name: location descriptor is_a: CO_020:0000082 ! origin descriptor [Term] id: CO_020:0000088 name: institute code comment: Code of the institute where the accession is maintained. The codes consist of the 3-letter ISO 3166 country code of the country where the institute is located plus number or an acronym as specified in the Institute database that will be made available by FAO. Preliminary codes (i.e. codes not yet incorporated in the FAO Institute database) start with an asterisk followed by a 3-letter ISO 3166 country code and an acronym. synonym: "(INSTCODE)" EXACT [] xref: GCP germplasm ontology:CO_010:0000154 xref: GCPDomainModel:CO_000:0000224 is_a: CO_020:0000080 ! institute descriptor [Term] id: CO_020:0000089 name: accession number comment: This number serves as a unique identifier for accessions and is assigned when an accession is entered into the collection. Once assigned this number should never be reassigned to another accession in the collection. Even if an accession is lost, its assigned number should never be reused. Letters should be used before the number to identify the genebank or national system (e.g. IDG indicates an accession that comes from the genebank at Bari, Italy; CGN indicates an accession from the genebank at Wageningen, The Netherlands; PI indicates an accession within the USA system). synonym: "(ACCENUMB)" EXACT [] xref: GCP germplasm ontology:CO_010:0000058 is_a: CO_020:0000079 ! germplasm identifier descriptor [Typedef] id: CO_020:0000001 name: range_of [Typedef] id: CO_020:0000002 name: descriptor_of