[
-
{- "prefLabel": "experimentally modified cell in vitro",
- "synonym": [ ],
-
"definition": [- "This class has been re-labeled to imply reference only to in vitro experimentally modified cells, similarly, the definition has been slightly updated to reflect this. 'experimentally modified cell' refers only to cells in vitro, and not modified in vivo/in environment cells. There is currently no class representing unmodified in vitro cells (other than the parent 'cell in vitro'), or a class representing modified native cells. More granular subclassing of experimentally modified cell can be found in ReO. MHB 1.12.12",
- "A cell in vitro that has undergone physical changes as a consequence of a deliberate and specific experimental procedure."
],- "obsolete": false,
- "@id": "http://purl.obolibrary.org/obo/CL_0000578",
- "@type": "http://www.w3.org/2002/07/owl#Class",
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/CL/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FCL_0000578",
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- "notes": "https://data.agroportal.lirmm.fr/ontologies/CL/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FCL_0000578/notes",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
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- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
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}
},-
"@context": {}
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{- "prefLabel": "cell in vitro",
- "synonym": [ ],
-
"definition": [- "'In vitro', translating literally to 'in glass', typically refers to a controlled, often sterile, laboratory setting where cells or other specimens are placed by some agent for the purpose of studying or manipulating them as part of some research investigation. 'In vitro' is intended to contrast with 'native',which refers to cells or other biological entities that are found in a natural setting. It describes unicellular organisms removed from a natural environement and multicellular organism cells removed from an organism, or cells derived in culture from such displaced cells.",
- "A cell that is maintained or propagated in a controlled artificial environment for use in an investigation."
],- "obsolete": false,
- "@id": "http://purl.obolibrary.org/obo/CL_0001034",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/CL/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FCL_0001034",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/CL",
- "children": "https://data.agroportal.lirmm.fr/ontologies/CL/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FCL_0001034/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/CL/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FCL_0001034/parents",
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- "mappings": "https://data.agroportal.lirmm.fr/ontologies/CL/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FCL_0001034/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/CL?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FCL_0001034",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
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- "notes": "http://data.bioontology.org/metadata/Note",
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}
},-
"@context": {}
},-
{- "prefLabel": "cell",
- "synonym": [ ],
-
"definition": [- "The definition of cell is intended to represent all cells, and thus a cell is defined as a material entity and not an anatomical structure, which implies that it is part of an organism (or the entirety of one).",
- "A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane."
],- "obsolete": false,
- "@id": "http://purl.obolibrary.org/obo/CL_0000000",
- "@type": "http://www.w3.org/2002/07/owl#Class",
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/CL/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FCL_0000000",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/CL",
- "children": "https://data.agroportal.lirmm.fr/ontologies/CL/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FCL_0000000/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/CL/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FCL_0000000/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/CL/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FCL_0000000/descendants",
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- "notes": "https://data.agroportal.lirmm.fr/ontologies/CL/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FCL_0000000/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/CL/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FCL_0000000/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/CL?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FCL_0000000",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "anatomical structure",
-
"synonym": [- "biological structure",
- "connected biological structure"
],-
"definition": [- "Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism's own genome."
],- "obsolete": false,
- "@id": "http://purl.obolibrary.org/obo/UBERON_0000061",
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/CL/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FUBERON_0000061",
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- "descendants": "https://data.agroportal.lirmm.fr/ontologies/CL/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FUBERON_0000061/descendants",
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- "ui": "http://agroportal.lirmm.fr/ontologies/CL?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FUBERON_0000061",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
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{- "prefLabel": "BFO_0000004",
- "synonym": [ ],
- "definition": [ ],
- "obsolete": false,
- "@id": "http://purl.obolibrary.org/obo/BFO_0000004",
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/CL/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FBFO_0000004",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
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- "mappings": "http://data.bioontology.org/metadata/Mapping",
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}
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"@context": {}
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{- "prefLabel": "material anatomical entity",
- "synonym": [ ],
-
"definition": [- "Anatomical entity that has mass."
],- "obsolete": false,
- "@id": "http://purl.obolibrary.org/obo/UBERON_0000465",
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/CL/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FUBERON_0000465",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
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{- "prefLabel": "BFO_0000040",
- "synonym": [ ],
- "definition": [ ],
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- "@type": "http://www.w3.org/2002/07/owl#Class",
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/CL/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FBFO_0000040",
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}
},-
"@context": {}
},-
{- "prefLabel": "anatomical entity",
- "synonym": [ ],
-
"definition": [- "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species."
],- "obsolete": false,
- "@id": "http://purl.obolibrary.org/obo/UBERON_0001062",
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- "tree": "https://data.agroportal.lirmm.fr/ontologies/CL/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FUBERON_0001062/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/CL/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FUBERON_0001062/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/CL/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FUBERON_0001062/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/CL?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FUBERON_0001062",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
}
]