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"definition": [- "Effect to process where introns in mRNA are cut away from exons."
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"definition": [- "Variation affecting cellular localization of RNA."
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"definition": [- "Variation affecting protein motif of three consecutive residues and one H-bond in which: residue(i) is serine or threonine, the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2)."
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},-
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{- "prefLabel": "antisense RNA",
-
"definition": [- "Single-stranded non-coding RNA compelementary to a mRNA or part of it."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://purl.obolibrary.org/obo/VariO_0463",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/VARIO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVariO_0463",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/VARIO",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
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}
},-
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{- "prefLabel": "modified mRNA nucleotide",
-
"definition": [- "Post transcriptionally modified nucleotide in mRNA."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://purl.obolibrary.org/obo/VariO_0499",
- "@type": "http://www.w3.org/2002/07/owl#Class",
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/VARIO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVariO_0499",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/VARIO",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
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- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
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{- "prefLabel": "effect on protein isoelectric point",
-
"definition": [- "Variation changing protein isoelectric point."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://purl.obolibrary.org/obo/VariO_0050",
- "@type": "http://www.w3.org/2002/07/owl#Class",
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/VARIO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVariO_0050",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/VARIO",
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- "parents": "https://data.agroportal.lirmm.fr/ontologies/VARIO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVariO_0050/parents",
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- "mappings": "https://data.agroportal.lirmm.fr/ontologies/VARIO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVariO_0050/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/VARIO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVariO_0050",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
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- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "noninteractive genetic interaction defined by inequality",
-
"synonym": [- "noninteractive",
- "noninteractive genetic interaction (sensu inequality)"
],-
"definition": [- "Variation that has no effect in the WT and b backgrounds, or b has no effect in the a and WT backgrounds, or both hold true. E. g., WT = a > b = ab."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://purl.obolibrary.org/obo/VariO_0255",
- "@type": "http://www.w3.org/2002/07/owl#Class",
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/VARIO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVariO_0255",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/VARIO",
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- "parents": "https://data.agroportal.lirmm.fr/ontologies/VARIO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVariO_0255/parents",
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- "instances": "https://data.agroportal.lirmm.fr/ontologies/VARIO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVariO_0255/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/VARIO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVariO_0255/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/VARIO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVariO_0255/notes",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
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- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
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{- "prefLabel": "autopolyploidy",
-
"definition": [- "Variation with several sets of chromosomes originating from the same organism."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://purl.obolibrary.org/obo/VariO_0219",
- "@type": "http://www.w3.org/2002/07/owl#Class",
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/VARIO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVariO_0219",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/VARIO",
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- "parents": "https://data.agroportal.lirmm.fr/ontologies/VARIO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVariO_0219/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/VARIO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVariO_0219/descendants",
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- "tree": "https://data.agroportal.lirmm.fr/ontologies/VARIO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVariO_0219/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/VARIO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVariO_0219/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/VARIO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVariO_0219/mappings",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
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- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
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{- "prefLabel": "effect on RNA bulge",
-
"definition": [- "Variation affecting RNA structure in which nucleotides in one strand do not form base pairs."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://purl.obolibrary.org/obo/VariO_0384",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/VARIO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVariO_0384",
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- "parents": "https://data.agroportal.lirmm.fr/ontologies/VARIO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVariO_0384/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/VARIO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVariO_0384/descendants",
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- "instances": "https://data.agroportal.lirmm.fr/ontologies/VARIO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVariO_0384/instances",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
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- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "effect on DNA repair",
-
"definition": [- "Variation affecting the process of restoring DNA after damage."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://purl.obolibrary.org/obo/VariO_0151",
- "@type": "http://www.w3.org/2002/07/owl#Class",
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/VARIO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVariO_0151",
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- "parents": "https://data.agroportal.lirmm.fr/ontologies/VARIO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVariO_0151/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/VARIO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVariO_0151/descendants",
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- "instances": "https://data.agroportal.lirmm.fr/ontologies/VARIO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVariO_0151/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/VARIO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVariO_0151/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/VARIO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVariO_0151/notes",
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- "ui": "http://agroportal.lirmm.fr/ontologies/VARIO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVariO_0151",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "alternatively polyadenylated mRNA",
-
"definition": [- "Polyadenylation of mRNA molecule at alternative site."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://purl.obolibrary.org/obo/VariO_0356",
- "@type": "http://www.w3.org/2002/07/owl#Class",
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/VARIO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVariO_0356",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/VARIO",
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"synonym": [],-
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"definition": [- "A complex RNA variation consisting of both nucleotide insertion(s) and deletion(s)."
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"definition": [- "Adjacent copies of a chromosomal region of length greater than 1."
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"definition": [- "Tandem repetitive sequence consisting of units in length from seven to few tens of base pairs."
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"definition": [- "Variation that has its origin in a cell in soma."
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{- "prefLabel": "effect on protein subcellular localization",
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"definition": [- "Effect of variation on the targeting of a protein within a cell or cellular compartment."
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{- "prefLabel": "interchromosomal translocation",
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"definition": [- "Translocation of chromosomal region to another chromosome."
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{- "prefLabel": "salt bridge",
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"definition": [- "Interaction between charged groups."
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{- "prefLabel": "effect on left handed protein helix",
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"definition": [- "Variation affecting protein left handed helix turning anticlockwise."
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