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{- "prefLabel": "restriction_enzyme_three_prime_single_strand_overhang",
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"synonym": [- "restriction enzyme three prime single strand overhang"
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{- "prefLabel": "transposable_element",
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"synonym": [- "transposable element",
- "transposon"
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"definition": [- "A transposon or insertion sequence. An element that can insert in a variety of DNA sequences."
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{- "prefLabel": "vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster",
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"synonym": [- "vertebrate immunoglobulin T cell receptor rearranged gene cluster"
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"definition": [- "Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration."
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{- "prefLabel": "non_canonical_three_prime_splice_site",
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"synonym": [- "non-canonical three prime splice site",
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],-
"definition": [- "A 3' splice site that does not have the sequence \"AG\"."
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{- "prefLabel": "sequence_collection",
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"synonym": [],-
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{- "prefLabel": "asx_turn_left_handed_type_one",
-
"synonym": [- "asx turn left handed type one"
],-
"definition": [- "Left handed type I (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, -90 degrees < psi +120 degrees < +40 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees."
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"synonym": [- "methylated base feature"
],-
"definition": [- "A nucleotide modified by methylation."
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"synonym": [],-
"definition": [- "A sequence variant that falls entirely or partially within a genomic feature."
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"synonym": [- "translocation attribute"
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"definition": [- "An attribute of a translocation, which is then a region of nucleotide sequence that has translocated to a new position. The observed adjacency of two previously separated regions."
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
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{- "prefLabel": "V_VJ_J_cluster",
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"synonym": [- "V VJ J cluster",
- "V-(VJ)-J-CLUSTER"
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"definition": [- "Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene and one J-gene."
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000525",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
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{- "prefLabel": "T_loop",
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"synonym": [],-
"definition": [- "Non-base-paired sequence of three nucleotide bases in tRNA. It has sequence T-Psi-C."
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001177",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
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{- "prefLabel": "H3K4_monomethylation_site",
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"synonym": [- "H3K4 mono-methylation site"
],-
"definition": [- "A kind of histone modification, whereby the 4th residue (a lysine), from the start of the H3 protein is mono-methylated."
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001705",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
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},-
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{- "prefLabel": "lysyl_tRNA",
-
"synonym": [- "lysyl-transfer ribonucleic acid",
- "lysyl-transfer RNA",
- "lysyl tRNA"
],-
"definition": [- "A tRNA sequence that has a lysine anticodon, and a 3' lysine binding region."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://purl.obolibrary.org/obo/SO_0000265",
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000265",
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- "ui": "http://agroportal.lirmm.fr/ontologies/SO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000265",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "target_site_duplication",
-
"synonym": [- "target site duplication"
],-
"definition": [- "A sequence of the target DNA that is duplicated when a transposable element or phage inserts; usually found at each end the insertion."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://purl.obolibrary.org/obo/SO_0000434",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000434",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/SO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000434/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000434/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000434/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000434/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000434/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000434/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000434/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000434/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/SO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000434",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "amino_acid",
-
"synonym": [],-
"definition": [- "A sequence feature that corresponds to a single amino acid residue in a polypeptide."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://purl.obolibrary.org/obo/SO_0001237",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001237",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/SO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001237/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001237/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001237/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001237/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001237/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001237/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001237/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001237/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/SO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001237",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "supported_by_sequence_similarity",
-
"synonym": [- "supported by sequence similarity"
],-
"definition": [- "An attribute to describe a feature that has been predicted using sequence similarity techniques."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://purl.obolibrary.org/obo/SO_0000907",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000907",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/SO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000907/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000907/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000907/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000907/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000907/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000907/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000907/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000907/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/SO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000907",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "V_region",
-
"synonym": [- "INSDC_feature:V_region",
- "V region"
],-
"definition": [- "The variable region of an immunoglobulin polypeptide sequence."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://purl.obolibrary.org/obo/SO_0001833",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001833",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/SO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001833/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001833/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001833/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001833/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001833/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001833/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001833/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001833/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/SO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001833",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "short_tandem_repeat_contraction",
-
"synonym": [- "short tandem repeat contraction",
- "str contraction"
],-
"definition": [- "A short tandem repeat variant containing fewer repeat units than the reference sequence."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://purl.obolibrary.org/obo/SO_0002163",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002163",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/SO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002163/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002163/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002163/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002163/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002163/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002163/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002163/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002163/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/SO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002163",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "haplotype",
-
"definition": [- "A haplotype is one of a set of coexisting sequence variants of a haplotype block."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://purl.obolibrary.org/obo/SO_0001024",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001024",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/SO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001024/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001024/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001024/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001024/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001024/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001024/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001024/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001024/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/SO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001024",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "modified_L_isoleucine",
-
"synonym": [- "ModIle",
- "modified L-isoleucine",
- "modified L isoleucine"
],-
"definition": [- "A post translationally modified isoleucine amino acid feature."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://purl.obolibrary.org/obo/SO_0001396",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001396",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/SO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001396/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001396/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001396/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001396/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001396/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001396/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001396/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001396/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/SO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001396",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "polyadenylation_variant",
-
"synonym": [- "polyadenylation variant"
],-
"definition": [- "A sequence variant that changes polyadenylation with respect to a reference sequence."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://purl.obolibrary.org/obo/SO_0001545",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001545",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/SO",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
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}
},-
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{- "prefLabel": "SO_1000114",
- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://purl.obolibrary.org/obo/SO_1000114",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_1000114",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/SO",
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- "parents": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_1000114/parents",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
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}
},-
"@context": {}
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{- "prefLabel": "plastid_SSU_rRNA_gene",
-
"synonym": [- "plastid small subunit rRNA gene"
],-
"definition": [- "A gene that codes for plastid SSU rRNA."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://purl.obolibrary.org/obo/SO_0002368",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002368",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/SO",
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- "descendants": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002368/descendants",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
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- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "encodes_overlapping_polypeptides_different_start_and_stop",
-
"synonym": [- "encodes overlapping polypeptides different start and stop"
],-
"definition": [- "A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences, but use different start and stop codons."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://purl.obolibrary.org/obo/SO_1001193",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_1001193",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/SO",
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- "parents": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_1001193/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_1001193/descendants",
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- "ui": "http://agroportal.lirmm.fr/ontologies/SO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_1001193",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
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- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "rRNA_primary_transcript_region",
-
"synonym": [- "rRNA primary transcript region"
],-
"definition": [- "A region of an rRNA primary transcript."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://purl.obolibrary.org/obo/SO_0000838",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000838",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/SO",
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- "parents": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000838/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000838/descendants",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
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},-
"@context": {}
},-
{- "prefLabel": "snoRNA_encoding",
-
"synonym": [],-
"definition": [- "A region that can be transcribed into a small nucleolar RNA (snoRNA)."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://purl.obolibrary.org/obo/SO_0000578",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000578",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/SO",
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- "parents": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000578/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000578/descendants",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
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}
},-
"@context": {}
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{- "prefLabel": "WC_base_pair",
-
"synonym": [- "WC base pair",
- "canonical base pair",
- "Watson-Crick pair",
- "Watson Crick base pair"
],-
"definition": [- "The canonical base pair, where two bases interact via WC edges, with glycosidic bonds oriented cis relative to the axis of orientation."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://purl.obolibrary.org/obo/SO_0000029",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000029",
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- "notes": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000029/notes",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "germline_variant",
-
"synonym": [],-
"definition": [- "A variant present in the embryo that is carried by every cell in the body."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://purl.obolibrary.org/obo/SO_0001778",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001778",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/SO",
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- "parents": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001778/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001778/descendants",
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- "tree": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001778/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001778/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001778/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/SO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001778",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "asx_turn_right_handed_type_one",
-
"synonym": [- "asx_turn_ir",
- "asx turn type right handed type one"
],-
"definition": [- "Right handed type I (dihedral angles):- Residue(i): -140 degrees < chi (1) -120 degrees < -20 degrees, -90 degrees < psi +120 degrees < +40 degrees. Residue(i+1): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://purl.obolibrary.org/obo/SO_0001132",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001132",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/SO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001132/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001132/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001132/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001132/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001132/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001132/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001132/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001132/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/SO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001132",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "group_IIA_intron",
-
"synonym": [],-
"definition": [- "A group II intron that recognizes IBS1/EBS1 and IBS2/EBS2 for the 5-prime exon and gamma/gamma-prime for the 3-prime exon."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://purl.obolibrary.org/obo/SO_0000381",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000381",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/SO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000381/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000381/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000381/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000381/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000381/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000381/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000381/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000381/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/SO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000381",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "epigenomically_modified_region",
-
"synonym": [- "epigenomically modified region"
],-
"definition": [- "A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://purl.obolibrary.org/obo/SO_0002332",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002332",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/SO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002332/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002332/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002332/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002332/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002332/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002332/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002332/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002332/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/SO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002332",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "assortment_derived_deficiency",
-
"synonym": [- "assortment-derived deficiency"
],-
"definition": [- "A multi-chromosome deficiency aberration generated by reassortment of other aberration components."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://purl.obolibrary.org/obo/SO_0000802",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000802",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/SO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000802/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000802/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000802/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000802/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000802/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000802/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000802/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000802/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/SO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000802",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "phagemid",
-
"synonym": [],-
"definition": [- "A plasmid which carries within its sequence a bacteriophage replication origin. When the host bacterium is infected with \"helper\" phage, a phagemid is replicated along with the phage DNA and packaged into phage capsids."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://purl.obolibrary.org/obo/SO_0000157",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000157",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/SO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000157/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000157/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000157/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000157/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000157/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000157/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000157/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000157/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/SO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000157",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "two_methylthio_N6_isopentenyladenosine",
-
"synonym": [- "ms2i6A",
- "2-methylthio-N6-isopentenyladenosine",
- "two methylthio N6 isopentenyladenosine"
],-
"definition": [- "2_methylthio_N6_isopentenyladenosine is a modified adenosine."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://purl.obolibrary.org/obo/SO_0001301",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001301",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/SO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001301/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001301/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001301/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001301/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001301/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001301/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001301/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001301/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/SO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001301",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "IG_D_gene",
-
"synonym": [- "immunoglobulin_D_gene",
- "IGD_gene",
- "Immunoglobulin_Diversity_ gene"
],-
"definition": [- "A gene that rearranges at the DNA level and codes the diversity region of the variable domain of an immunoglobuin (IG) gene."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://purl.obolibrary.org/obo/SO_0002124",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002124",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/SO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002124/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002124/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002124/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002124/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002124/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002124/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002124/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002124/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/SO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002124",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
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{- "prefLabel": "unique_variant",
-
"synonym": [],-
"definition": [- "A physical quality which inheres to the variant by virtue of the number instances of the variant within a population."
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- "@id": "http://purl.obolibrary.org/obo/SO_0001764",
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001764",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
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}
},-
"@context": {}
},-
{- "prefLabel": "methylwyosine",
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"synonym": [],-
"definition": [- "Methylwyosine is a modified guanosine base feature."
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001337",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
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},-
"@context": {}
},-
{- "prefLabel": "monomeric_repeat",
-
"synonym": [],-
"definition": [- "A repeat_region containing repeat_units of 1 bp that is repeated multiple times in tandem."
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001934",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/SO",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
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{- "prefLabel": "PIF_Harbinger_TIR_transposon",
-
"synonym": [- "Harbinger transposon",
- "Tourist transposon element",
- "PIF transposon",
- "DTH transposon",
- "PIF Harbinger TIR transposon"
],-
"definition": [- "Terminal inverted repeat transposons in the PIF/Harbinger/tourist superfamily create 3-bp target site duplication that are mainly 'TAA' or 'TTA'. The autonomous PIF-Harbinger elements are relatively small in size, usually a few kb in length. Non-autonomous elements in this superfamily usually shorter than 600 bp are referrred to as Tourist elements. The terminal sequences for PIF/Harbinger/Tourist elements are 'GGG/CCC…GGC/GCC' or 'GA/GGCA…TGCC/TC'."
],- "obsolete": false,
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- "@type": "http://www.w3.org/2002/07/owl#Class",
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002284",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/SO",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
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"@context": {}
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{- "prefLabel": "LINE_element",
-
"synonym": [- "LINE element",
- "Long interspersed nuclear element",
- "LINE",
- "Long interspersed element"
],-
"definition": [- "A dispersed repeat family with many copies, each from 1 to 6 kb long. New elements are generated by retroposition of a transcribed copy. Typically the LINE contains 2 ORF's one of which is reverse transcriptase, and 3'and 5' direct repeats."
],- "obsolete": false,
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000194",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
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{- "prefLabel": "fosmid",
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"synonym": [],-
"definition": [- "A cloning vector that utilizes the E. coli F factor."
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- "@id": "http://purl.obolibrary.org/obo/SO_0000158",
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000158",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/SO",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
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}
},-
"@context": {}
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{- "prefLabel": "IG_J_gene",
-
"synonym": [- "Immunoglobulin_Joining_Gene",
- "IG_joining_gene",
- "immunoglobulin_J_gene"
],-
"definition": [- "A joining gene that rearranges at the DNA level and codes the joining region of the variable domain of an immunoglobulin chain."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://purl.obolibrary.org/obo/SO_0002125",
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002125",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/SO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002125/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002125/parents",
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- "notes": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002125/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002125/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/SO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002125",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
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- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
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{- "prefLabel": "vertebrate_immune_system_gene_recombination_signal_feature",
-
"synonym": [- "vertebrate immune system gene recombination signal feature"
],-
"definition": [- "Feature used for the recombination of genomic material for the purpose of generating diversity of the immune system."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://purl.obolibrary.org/obo/SO_0000939",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
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"synonym": [],-
"definition": [- "The acceptor region of a two-piece tmRNA that when mature is charged at its 3' end with alanine. The tmRNA gene undergoes circular permutation in some groups of bacteria; processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together."
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
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{- "prefLabel": "coding_end",
-
"synonym": [- "translation termination site",
- "coding end",
- "translation_end"
],-
"definition": [- "The last base to be translated into protein. It does not include the stop codon."
],- "obsolete": false,
- "matchType": "prefLabel",
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- "@id": "http://purl.obolibrary.org/obo/SO_0000327",
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000327",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/SO",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
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{- "prefLabel": "non_coding_transcript_intron_variant",
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"synonym": [- "non coding transcript intron variant"
],-
"definition": [- "A transcript variant occurring within an intron of a non coding transcript."
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0001970",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
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{- "prefLabel": "intronic_splicing_silencer",
-
"synonym": [- "intronic splicing silencer",
- "ISS"
],-
"definition": [- "An intronic splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control."
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- "matchType": "prefLabel",
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0002056",
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{- "prefLabel": "minicircle_gene",
-
"synonym": [],-
"definition": [- "A gene found within a minicircle."
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/SO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSO_0000975",
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}