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{- "prefLabel": "Collection of regions",
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"definition": [- "Sometimes a location of a feature is defined by a collection of regions e.g. join() and order() in INSDC records. One should always try to model the semantics more accurately than this, these are fallback options to encode legacy data."
],- "obsolete": false,
- "matchType": "prefLabel",
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23CollectionOfRegions",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
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{- "prefLabel": "Fuzzy position",
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"definition": [- "A position that lacks exact data."
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
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}
},-
"@context": {}
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{- "prefLabel": "Region",
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"definition": [- "A region describes a length of sequence with a start position and end position that represents a feature on a sequence, e.g. a gene."
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- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://biohackathon.org/resource/faldo#Region",
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23Region",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
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{- "prefLabel": "Bag",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
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{- "prefLabel": "In between positions",
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"definition": [- "This indicates that a feature is between two other positions that are both known exactly and that are next to each other. An example is a restriction enzyme cutting site. The cut is after one position and before the other position (hence, in between)."
],- "obsolete": false,
- "matchType": "prefLabel",
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23InBetweenPosition",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
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{- "prefLabel": "Seq",
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{- "prefLabel": "Forward/positive strand position",
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"definition": [- "The position is on the forward (positive, 5' to 3') strand. Shown as a '+' in GFF3 and GTF."
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23ForwardStrandPosition",
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"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
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}
},-
"@context": {}
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{- "prefLabel": "Both strands position",
-
"definition": [- "The 'both strands position' indicates a region that is best described as being on 'both' strands of a double-stranded sequence, rather than one or the other."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://biohackathon.org/resource/faldo#BothStrandsPosition",
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"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23BothStrandsPosition",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/FALDO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23BothStrandsPosition/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23BothStrandsPosition/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23BothStrandsPosition/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23BothStrandsPosition/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23BothStrandsPosition/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23BothStrandsPosition/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23BothStrandsPosition/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23BothStrandsPosition/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/FALDO?p=classes&conceptid=http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23BothStrandsPosition",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Negative/reverse strand position",
-
"definition": [- "The position is on the reverse (complement, 3' to 5') strand of the sequence. Shown as '-' in GTF and GFF3."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://biohackathon.org/resource/faldo#ReverseStrandPosition",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23ReverseStrandPosition",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/FALDO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23ReverseStrandPosition/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23ReverseStrandPosition/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23ReverseStrandPosition/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23ReverseStrandPosition/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23ReverseStrandPosition/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23ReverseStrandPosition/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23ReverseStrandPosition/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23ReverseStrandPosition/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/FALDO?p=classes&conceptid=http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23ReverseStrandPosition",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Bag of regions",
-
"definition": [- "Used to describe a location that consists of a number of Regions but where the order is not known. e.g. the oddly named order() keyword in a INSDC file."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://biohackathon.org/resource/faldo#BagOfRegions",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23BagOfRegions",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/FALDO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23BagOfRegions/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23BagOfRegions/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23BagOfRegions/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23BagOfRegions/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23BagOfRegions/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23BagOfRegions/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23BagOfRegions/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23BagOfRegions/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/FALDO?p=classes&conceptid=http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23BagOfRegions",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Exact position",
-
"definition": [- "A position that is exactly known."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://biohackathon.org/resource/faldo#ExactPosition",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23ExactPosition",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/FALDO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23ExactPosition/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23ExactPosition/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23ExactPosition/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23ExactPosition/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23ExactPosition/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23ExactPosition/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23ExactPosition/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23ExactPosition/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/FALDO?p=classes&conceptid=http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23ExactPosition",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "N-TerminalPosition",
-
"definition": [- "The position of the starting amino-acid a protein or polypeptide terminated by an amino acid with a free amine group (-NH2). The convention for writing peptide sequences is to put the N-terminus on the left and write the sequence from N- to C-terminus. Instances of this class are often used when the reference sequence is not complete "
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://biohackathon.org/resource/faldo#N-TerminalPosition",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23N-TerminalPosition",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/FALDO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23N-TerminalPosition/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23N-TerminalPosition/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23N-TerminalPosition/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23N-TerminalPosition/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23N-TerminalPosition/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23N-TerminalPosition/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23N-TerminalPosition/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23N-TerminalPosition/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/FALDO?p=classes&conceptid=http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23N-TerminalPosition",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Indeterminate position within a range",
-
"definition": [- "Use when you have an idea of the range in which you can find the position, but you cannot be sure about the exact position."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://biohackathon.org/resource/faldo#InRangePosition",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23InRangePosition",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/FALDO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23InRangePosition/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23InRangePosition/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23InRangePosition/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23InRangePosition/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23InRangePosition/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23InRangePosition/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23InRangePosition/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23InRangePosition/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/FALDO?p=classes&conceptid=http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23InRangePosition",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "List of regions",
-
"definition": [- "As an ordered list of regions (but the list might not be complete).",
- "Should be used when the location of a region is defined by an ordered list of Regions. However, try to avoid using these types in favor of using more explicit semantics about why the order is important."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://biohackathon.org/resource/faldo#ListOfRegions",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23ListOfRegions",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/FALDO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23ListOfRegions/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23ListOfRegions/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23ListOfRegions/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23ListOfRegions/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23ListOfRegions/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23ListOfRegions/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23ListOfRegions/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23ListOfRegions/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/FALDO?p=classes&conceptid=http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23ListOfRegions",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Position",
-
"definition": [- "Superclass for the general concept of a position on a sequence. The sequence is designated with the reference predicate."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://biohackathon.org/resource/faldo#Position",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23Position",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/FALDO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23Position/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23Position/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23Position/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23Position/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23Position/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23Position/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23Position/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23Position/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/FALDO?p=classes&conceptid=http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23Position",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "One of positions",
-
"definition": [- "The position is known to be one of the more detailed positions listed by the location predicate."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://biohackathon.org/resource/faldo#OneOfPosition",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23OneOfPosition",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/FALDO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23OneOfPosition/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23OneOfPosition/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23OneOfPosition/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23OneOfPosition/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23OneOfPosition/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23OneOfPosition/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23OneOfPosition/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23OneOfPosition/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/FALDO?p=classes&conceptid=http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23OneOfPosition",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "Stranded position",
-
"definition": [- "Part of the coordinate system denoting on which strand the feature can be found. If you do not yet know which stand the feature is on, you should tag the position with just this class. If you know more you should use one of the subclasses. This means a region described with a '.' in GFF3. A GFF3 unstranded position does not have this type in FALDO -- those are just a 'position'."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://biohackathon.org/resource/faldo#StrandedPosition",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23StrandedPosition",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/FALDO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23StrandedPosition/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23StrandedPosition/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23StrandedPosition/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23StrandedPosition/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23StrandedPosition/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23StrandedPosition/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23StrandedPosition/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23StrandedPosition/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/FALDO?p=classes&conceptid=http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23StrandedPosition",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
},-
{- "prefLabel": "C-Terminal position",
-
"definition": [- "The C-terminus is the end of an amino acid chain (protein or polypeptide), terminated by a free carboxyl group (-COOH)."
],- "obsolete": false,
- "matchType": "prefLabel",
- "ontologyType": "ONTOLOGY",
- "@id": "http://biohackathon.org/resource/faldo#C-TerminalPosition",
- "@type": "http://www.w3.org/2002/07/owl#Class",
-
"links": {- "self": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23C-TerminalPosition",
- "ontology": "https://data.agroportal.lirmm.fr/ontologies/FALDO",
- "children": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23C-TerminalPosition/children",
- "parents": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23C-TerminalPosition/parents",
- "descendants": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23C-TerminalPosition/descendants",
- "ancestors": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23C-TerminalPosition/ancestors",
- "instances": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23C-TerminalPosition/instances",
- "tree": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23C-TerminalPosition/tree",
- "notes": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23C-TerminalPosition/notes",
- "mappings": "https://data.agroportal.lirmm.fr/ontologies/FALDO/classes/http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23C-TerminalPosition/mappings",
- "ui": "http://agroportal.lirmm.fr/ontologies/FALDO?p=classes&conceptid=http%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23C-TerminalPosition",
-
"@context": {- "self": "http://www.w3.org/2002/07/owl#Class",
- "ontology": "http://data.bioontology.org/metadata/Ontology",
- "children": "http://www.w3.org/2002/07/owl#Class",
- "parents": "http://www.w3.org/2002/07/owl#Class",
- "descendants": "http://www.w3.org/2002/07/owl#Class",
- "ancestors": "http://www.w3.org/2002/07/owl#Class",
- "instances": "http://data.bioontology.org/metadata/Instance",
- "tree": "http://www.w3.org/2002/07/owl#Class",
- "notes": "http://data.bioontology.org/metadata/Note",
- "mappings": "http://data.bioontology.org/metadata/Mapping",
- "ui": "http://www.w3.org/2002/07/owl#Class"
}
},-
"@context": {}
}
]
}