An ontology that describes phenotypic traits in plants. Each trait is a distinguishable feature, characteristic, quality or phenotypic feature of a developing or mature plant.
Plant Trait Ontology
plant_trait_ontology
1.2
cooperl
definition
term replaced by
Terms_used_for_leek
Terms_used_for_squash
Terms_used_for_soybean
Term_used_for_barley
Terms_used_for_sugarcane
Terms_used_for_the_Solanaceae
Terms_used_for_wheat
Terms_used_for_maize_or_corn
subset_property
has_alternative_id
has_broad_synonym
database_cross_reference
has_exact_synonym
has_narrow_synonym
has_obo_format_version
has_obo_namespace
has_related_synonym
in_subset
shorthand
BFO:0000050
plant_trait_ontology
part_of
part_of
part of
BFO:0000051
plant_trait_ontology
has_part
has_part
has part
BFO:0000066
plant_trait_ontology
occurs_in
occurs_in
occurs in
RO:0000052
plant_trait_ontology
inheres_in
inheres_in
inheres in
plant_trait_ontology
evaluation_location
evaluation location
plant_trait_ontology
from_country
from country
plant_trait_ontology
has_absolute_phenotype
has absolute phenotype
plant_trait_ontology
has_dividend_entity
has dividend entity
plant_trait_ontology
has_dividend_quality
has dividend quality
plant_trait_ontology
has_divisor_entity
has divisor entity
plant_trait_ontology
has_divisor_quality
has divisor quality
plant_trait_ontology
has_phenotype_score
has phenotype score
plant_trait_ontology
has_phenotype_variable
has phenotype variable
plant_trait_ontology
has_ratio_quality
has ratio quality
plant_trait_ontology
has_relative_phenotype
has relative phenotype
plant_trait_ontology
relative_to
relative to
Sensitivity to the carbon content in the growth medium. It plays an important role in the synthesis of various inorganic and organic metabolites such as carbohydrates, lipids, amino acids and peptides and plays a role in various metabolic processes.
plant_trait_ontology
CBSN (related)
carbon deficiency (related)
TO:0000001
carbon sensitivity
Sensitivity to the carbon content in the growth medium. It plays an important role in the synthesis of various inorganic and organic metabolites such as carbohydrates, lipids, amino acids and peptides and plays a role in various metabolic processes.
Gramene:pankaj_jaiswal
OBSOLETE. An epigenetic trait is a distinguishable feature or a characteristic or a quality of character or a phenotypic feature of a developing or developed individual but have arisen as a result of mechanisms regulating the expression of the genes rather than differences in the gene sequence.
plant_trait_ontology
TO:0000002
OBSOLETE epigenetic trait
true
OBSOLETE. An epigenetic trait is a distinguishable feature or a characteristic or a quality of character or a phenotypic feature of a developing or developed individual but have arisen as a result of mechanisms regulating the expression of the genes rather than differences in the gene sequence.
Gramene:pankaj_jaiswal
ISBN:0198506732
Plant sensitivity to soils with alkali conditions (pH>7).
plant_trait_ontology
AlkS (related)
alkali sensitivity (related)
TO:0000003
Observed by general growth conditions in relation to standard resistant and susceptible checks. Since some soil problems are very heterogeneous in the field, several replications may be needed to obtain precise reading. Leaf is counted as discolored or dead if more than half of its area is discolored or dead.
alkali soil sensitivity
Plant sensitivity to soils with alkali conditions (pH>7).
IRRI:SES
TO:moorel
Trait of a plant in which the action of the cytotoxic gene used to introduce male sterility is suppressed by the application of a chemical to the plant. Reversion of the sterility allows the RMS parent to be self-fertilized, a step that overcomes the need to remove fertile sib plants prior to making the hybrid cross.
plant_trait_ontology
RMS (related)
TO:0000004
reversible male sterility
Trait of a plant in which the action of the cytotoxic gene used to introduce male sterility is suppressed by the application of a chemical to the plant. Reversion of the sterility allows the RMS parent to be self-fertilized, a step that overcomes the need to remove fertile sib plants prior to making the hybrid cross.
PMID:10645437
true
Sensitivity to the calcium content in the growth medium. Plays an important role in cell wall synthesis and enzyme activities.
plant_trait_ontology
CALSN (related)
calcium deficiency (related)
TO:0000006
calcium sensitivity
Sensitivity to the calcium content in the growth medium. Plays an important role in cell wall synthesis and enzyme activities.
Gramene:pankaj_jaiswal
Response by the plant in terms of sensitivity to sulfur content in the growth medium. It is important for synthesis of some amino acid residues.
plant_trait_ontology
SFSN (related)
sulfur deficiency (related)
TO:0000007
sulfur sensitivity
Response by the plant in terms of sensitivity to sulfur content in the growth medium. It is important for synthesis of some amino acid residues.
Gramene:pankaj_jaiswal
Sensitivity to the potassium ion content in the growth medium. It plays an important role in controlling water by osmosis and also in the metal ion homeostasis.
plant_trait_ontology
KSN (related)
potassium deficiency (related)
TO:0000008
potassium sensitivity
Sensitivity to the potassium ion content in the growth medium. It plays an important role in controlling water by osmosis and also in the metal ion homeostasis.
Gramene:pankaj_jaiswal
Male sterility affected by photoperiod.
plant_trait_ontology
PGMS (related)
PPDSNGMS (related)
photoperiod sensitive genic male sterility (related)
TO:0000009
genic male sterility-photoperiod sensitive
Male sterility affected by photoperiod.
Gramene:pankaj_jaiswal
IRRI:SES
Sensitivity to the magnesium content in the growth medium. It is important for chlorophyll biosynthesis and metal ion homeostasis.
plant_trait_ontology
MGSN (related)
magnesium deficiency (related)
TO:0000010
magnesium sensitivity
Sensitivity to the magnesium content in the growth medium. It is important for chlorophyll biosynthesis and metal ion homeostasis.
Gramene:pankaj_jaiswal
Sensitivity to the nitrogen content in the growth medium. It is important for protein synthesis, chlorophyll etc.
plant_trait_ontology
NISN (related)
nitrogen deficiency (related)
TO:0000011
nitrogen sensitivity
Sensitivity to the nitrogen content in the growth medium. It is important for protein synthesis, chlorophyll etc.
Gramene:pankaj_jaiswal
Sensitivity to the molecular hydrogen or hydrogen ion content in the growth medium. It plays an important role in the synthesis of various inorganic and organic metabolites such as carbohydrates, lipids, amino acids and peptides and plays a role in the energy metabolism, osmolarity, etc.
plant_trait_ontology
hydrogen ion sensitivity (related)
molecular hydrogen sensitivity (related)
TO:0000012
hydrogen sensitivity
Sensitivity to the molecular hydrogen or hydrogen ion content in the growth medium. It plays an important role in the synthesis of various inorganic and organic metabolites such as carbohydrates, lipids, amino acids and peptides and plays a role in the energy metabolism, osmolarity, etc.
Gramene:pankaj_jaiswal
An assay to determine the resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a mycoplasma-like pathogen infection as compared to the susceptible and/or the reference plants of the same species.
plant_trait_ontology
MLO (related)
MLORS (related)
TO:0000013
The factors needed for successful test are the presence of sources and vectors, inoculation at the susceptible growth stage of the test plants and favorable environmental conditions.
resistance to disease by mycoplasma-like organism
An assay to determine the resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a mycoplasma-like pathogen infection as compared to the susceptible and/or the reference plants of the same species.
Gramene:pankaj_jaiswal
IRRI:SES
Average weight of the panicle from the plants or tillers in a given study.
plant_trait_ontology
PNWT (related)
TO:0000014
panicle weight
Average weight of the panicle from the plants or tillers in a given study.
Gramene:pankaj_jaiswal
Sensitivity to the molecular oxygen or reactive oxygen ion content in the growth medium. It plays an important role in the synthesis of various inorganic and organic metabolites such as carbohydrates, lipids, aminoacids and peptides and plays a role in the energy metabolism.
plant_trait_ontology
oxygen deficiency (related)
TO:0000015
oxygen sensitivity
Sensitivity to the molecular oxygen or reactive oxygen ion content in the growth medium. It plays an important role in the synthesis of various inorganic and organic metabolites such as carbohydrates, lipids, aminoacids and peptides and plays a role in the energy metabolism.
Gramene:pankaj_jaiswal
Sensitivity to the cobalt content in the growth medium.
plant_trait_ontology
COSN (related)
TO:0000016
cobalt sensitivity
Sensitivity to the cobalt content in the growth medium.
Gramene:pankaj_jaiswal
A plant trait (TO:0000387) which is a morphological quality of a plant anatomical entity (PO:0025131) or a constituent cellular component (GO:0005575) contained therein.
TO_GIT:54
plant_trait_ontology
plant architecture trait (related)
plant structure trait (related)
TO:0000017
Includes traits of plant structures (PO:0009011) such as plant cell (PO:0009002), plant organ (PO:0009008), portion of plant tissue (PO:0009007), vascular system (PO:0000034), whole plant (PO:0000003) and seed (PO:0009010), as well as those of plant anatomical spaces (PO:0025117) and portions of plant substance (PO:0025161).
plant morphology trait
A plant trait (TO:0000387) which is a morphological quality of a plant anatomical entity (PO:0025131) or a constituent cellular component (GO:0005575) contained therein.
GO:0005575
Gramene:pankaj_jaiswal
PO:0025131
TO:cooperl
Sensitivity to the boron content in the growth medium. It plays an important role in cell division.
plant_trait_ontology
BOSN (related)
boron deficiency (related)
TO:0000018
boron sensitivity
Sensitivity to the boron content in the growth medium. It plays an important role in cell division.
Gramene:pankaj_jaiswal
Average height measurements of 10 seedlings, in centimeters from the base of the shoot to the tip of the tallest leaf blade.
plant_trait_ontology
SH (related)
TO:0000019
seedling height
Average height measurements of 10 seedlings, in centimeters from the base of the shoot to the tip of the tallest leaf blade.
IRRI:SES
plant_trait_ontology
BSDVRS (related)
TO:0000020
black streak dwarf virus resistance
Sensitivity to the copper ion content in the growth medium. Plays a role as cofactor in synthesis of some enzymes important in photosynthesis.
plant_trait_ontology
CUSN (related)
TO:0000021
copper sensitivity
Sensitivity to the copper ion content in the growth medium. Plays a role as cofactor in synthesis of some enzymes important in photosynthesis.
Gramene:pankaj_jaiswal
Causal agent: Oebalus pugnax.
plant_trait_ontology
SBUGRS (related)
TO:0000022
stink bug resistance
Causal agent: Oebalus pugnax.
Gramene:pankaj_jaiswal
Causal agent: species of Sarocladium, Bipolaris, Alternaria, Gerlachia, Fusarium, Phoma, Curvularia, Trichoconiella and Psaudomonas etc. Symptoms: darkening of glumes of spikelets, brown color to black including rotten glumes caused by one or more pathogens. Intensity ranges from sporadic discoloration to discoloration of the whole glume. Severity of grain discoloration can be estimated by counting of grains with more than 25% of glume surface affected.
plant_trait_ontology
Gd (related)
grain discoloration (related)
TO:0000023
fungal infection related grain discoloration
Causal agent: species of Sarocladium, Bipolaris, Alternaria, Gerlachia, Fusarium, Phoma, Curvularia, Trichoconiella and Psaudomonas etc. Symptoms: darkening of glumes of spikelets, brown color to black including rotten glumes caused by one or more pathogens. Intensity ranges from sporadic discoloration to discoloration of the whole glume. Severity of grain discoloration can be estimated by counting of grains with more than 25% of glume surface affected.
Gramene:pankaj_jaiswal
IRRI:SES
A ligule morphology trait (TO:0002748) which is a length of a ligule measured in millimeters from the base of the leaf collar to the tip of the ligule (PO:0020105).
PATO:0000122
plant_trait_ontology
LIGLG (related)
LgL (related)
TO:0000024
Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points.
ligule length
A ligule morphology trait (TO:0002748) which is a length of a ligule measured in millimeters from the base of the leaf collar to the tip of the ligule (PO:0020105).
IRRI:SES
PO:0020105
TO:cooperl
Important for nitrate fixation.
plant_trait_ontology
TO:0000025
molybdenum sensitivity
Important for nitrate fixation.
Gramene:pankaj_jaiswal
Abortion at tri-nucleate stage of microspore development.
plant_trait_ontology
TNUABR (related)
TO:0000026
An example is CMS-boro in rice.
aborted tri-nucleate stage
Abortion at tri-nucleate stage of microspore development.
Gramene:pankaj_jaiswal
IRRI:SES
Actual count of the total number of tillers after full heading, Specify if per plant, hill or area.
plant_trait_ontology
CmN (related)
TO:0000027
culm number
Actual count of the total number of tillers after full heading, Specify if per plant, hill or area.
IRRI:SES
Number of unfilled florets in a grass inflorescence.
plant_trait_ontology
UNFILGRNB (related)
unfilled florets per panicle (related)
unfilled grain (related)
TO:0000028
unfilled grain number
Number of unfilled florets in a grass inflorescence.
Gramene:pankaj_jaiswal
Sensitivity to the chlorine content in the growth medium. Chloride helps regulate the correct pH (acid/alkaline) balance. This is a major electrolyte in the living cell besides sodium and potassium. It is available to the cell mainly in the form of NaCl and KCl salts.
plant_trait_ontology
CHLORSN (related)
TO:0000029
chlorine sensitivity
Sensitivity to the chlorine content in the growth medium. Chloride helps regulate the correct pH (acid/alkaline) balance. This is a major electrolyte in the living cell besides sodium and potassium. It is available to the cell mainly in the form of NaCl and KCl salts.
Gramene:pankaj_jaiswal
A weed damage response (TO:0000347) trait which is the response of a plant to weed competition from sedge weeds.
plant_trait_ontology
TO:0000030
Sedges are perennial plants which resemble grasses, and commonly grow in shallow water or moist soils, such as rice production fields. Sedges may be distinguished from grasses by their stem cross-section (solid, triangular) and leaf shape (long, thin-textured, narrow and flat).
Common sedge weeds in rice fields include Smallflower Umbrella Sedge (Cyperus difformis), Ricefield Bulrush (Scirpus mucronatus), and River Bulrush (Scirpus fluviatilis).
sedge weed response
A weed damage response (TO:0000347) trait which is the response of a plant to weed competition from sedge weeds.
Gramene:pankaj_jaiswal
ISBN:9712200299
TO:cooperl
http://ipm.ucanr.edu/PMG/WEEDS/sedge_gallery.html
plant_trait_ontology
TO:0000031
silicon sensitivity
plant_trait_ontology
TO:0000032
selenium sensitivity
plant_trait_ontology
TO:0000033
iodine sensitivity
Sensitivity to the chromium content in the growth medium.
plant_trait_ontology
CHRSN (related)
TO:0000034
chromium sensitivity
Sensitivity to the chromium content in the growth medium.
Gramene:pankaj_jaiswal
plant_trait_ontology
TO:0000035
incompatibility trait
plant_trait_ontology
HYBIC (related)
TO:0000036
hybrid incompatibility
OBSOLETE. Determines the extent of male sterility of a male sterile line. Can be determined by either pollen sterility or spikelet fertility
plant_trait_ontology
degree of male sterility of male sterile lines (related)
male sterility measure (related)
TO:0000037
OBSOLETE male sterility extent
true
OBSOLETE. Determines the extent of male sterility of a male sterile line. Can be determined by either pollen sterility or spikelet fertility
Gramene:pankaj_jaiswal
IRRI:SES
plant_trait_ontology
TO:0000038
fluorine sensitivity
OBSOLETE. Defines the components that determine the over all yield from a plant
plant_trait_ontology
TO:0000039
OBSOLETE yield component
true
OBSOLETE. Defines the components that determine the over all yield from a plant
Gramene:pankaj_jaiswal
A panicle morphology trait (TO:0000847) which is the measurement in centimeters from panicle base to tip.
plant_trait_ontology
PNLG (related)
PnL (related)
TO:0000040
Evaluated at growth stage:8 in rice.
panicle length
A panicle morphology trait (TO:0000847) which is the measurement in centimeters from panicle base to tip.
IRRI:SES
A grain length (TO:0000734) monitored after dehulling but before polishing. The grain should contain pericarp (PO:0009084).
PATO:0000122
plant_trait_ontology
BRWLG (related)
Len (related)
TO:0000041
Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
brown rice length
A grain length (TO:0000734) monitored after dehulling but before polishing. The grain should contain pericarp (PO:0009084).
IRRI:SES
PO:0009084
TO:moorel
plant_trait_ontology
F1HYBIC (related)
TO:0000042
f1-hybrid incompatibility
A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025).
TO_GIT:58
plant_trait_ontology
TO:0000043
root morphology trait
A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025).
Gramene:pankaj_jaiswal
PO:0025025
TO:cooperl
Trait is monitored by counting number of flowers or florets that have completed anthesis on a given day and showing exserted stigma. Trait expressed as percent stigma exsertion.
plant_trait_ontology
STIEX (related)
stigma exsertion of male sterile lines (related)
TO:0000044
Scale, (%), Stigma exsertion; 1- Above 70, Well exserted; 3- 41-70, Moderately well exserted; 5- 21-40, Just exserted; 7- 11-20, Partly exserted; 9- 0-10, Enclosed. Evaluated at growth stage:6 and 7 in rice.
stigma exsertion
Trait is monitored by counting number of flowers or florets that have completed anthesis on a given day and showing exserted stigma. Trait expressed as percent stigma exsertion.
Gramene:pankaj_jaiswal
IRRI:SES
Causal agent: Balanasia oryzae-sativae (Ephelis oryzae). Symptoms: a white mycelial mat ties the panicle branches together so that they emerge as single, small, cylindrical rods.
plant_trait_ontology
UDb (related)
TO:0000045
udbatta disease resistance
Causal agent: Balanasia oryzae-sativae (Ephelis oryzae). Symptoms: a white mycelial mat ties the panicle branches together so that they emerge as single, small, cylindrical rods.
Gramene:pankaj_jaiswal
IRRI:SES
plant_trait_ontology
F2GST (related)
TO:0000046
f2-generation sterility
plant_trait_ontology
TO:0000047
sporophytic incompatibility
Causal agent: Tilletia barclayana. Symptoms: infected grains show minute black pustules or streaks bursting through the glumes. In severe infection, the rupturing glumes produce short beak-like or spur-like outgrowths.
plant_trait_ontology
KSRS (related)
KSm (related)
TO:0000048
kernel smut disease resistance
Causal agent: Tilletia barclayana. Symptoms: infected grains show minute black pustules or streaks bursting through the glumes. In severe infection, the rupturing glumes produce short beak-like or spur-like outgrowths.
Gramene:pankaj_jaiswal
plant_trait_ontology
GPHIC (related)
TO:0000049
gametophytic incompatibility
An inflorescence morphology trait (TO:0000373) which is the extent of branching. (PO:0009049).
TO:0000263
TO_GIT:96
plant_trait_ontology
panicle branching (related)
TO:0000050
Branching usually determines the shape and compactness of the inflorescence
inflorescence branching
An inflorescence morphology trait (TO:0000373) which is the extent of branching. (PO:0009049).
Gramene:pankaj_jaiswal
PO:0009049
TO:moorel
A stem morphology trait (TO:0000361) which is the strength of a stem (PO:0009047).
PATO:0001230
plant_trait_ontology
CULMSTR (related)
Cs (related)
STEMSTR (related)
culm strength (related)
TO:0000051
Refer to strength (PATO:0001230): A quality inhering in a bearer by virtue of the bearer's power or force.
stem strength
A stem morphology trait (TO:0000361) which is the strength of a stem (PO:0009047).
Gramene:pankaj_jaiswal
IRRI:SES
PO:0009047
TO:moorel
An inflorescence morphology trait (TO:0000373) which is the extent of primary branching that usually sets the tone for shape and compactness of the inflorescence (PO:0009049) (rice panicle).
plant_trait_ontology
PBR (related)
primary branching of panicle (related)
TO:0000052
primary branching of inflorescence
An inflorescence morphology trait (TO:0000373) which is the extent of primary branching that usually sets the tone for shape and compactness of the inflorescence (PO:0009049) (rice panicle).
Gramene:pankaj_jaiswal
PO:0009049
TO:moorel
Observed under a microscope at magnification 10x10 after staining with 1% iodine potassium iodide (IKI) solution. Samples for pollen are collected from anthers and fixed in 70% alcohol. Two to three anthers are extracted from each floret and pollen grains are squeezed out into the IKI solution drop. At least three fields are used to count the sterile pollen grains; unstained withered, unstained spherical and partially stained round and fertile, from stained round pollen grains. Percentage sterility is calculated as = (unstained withered+unstained spherical+partially stained) x 100/total number of pollen grains in the field including the fertile.
plant_trait_ontology
TO:0000053
pollen sterility
Observed under a microscope at magnification 10x10 after staining with 1% iodine potassium iodide (IKI) solution. Samples for pollen are collected from anthers and fixed in 70% alcohol. Two to three anthers are extracted from each floret and pollen grains are squeezed out into the IKI solution drop. At least three fields are used to count the sterile pollen grains; unstained withered, unstained spherical and partially stained round and fertile, from stained round pollen grains. Percentage sterility is calculated as = (unstained withered+unstained spherical+partially stained) x 100/total number of pollen grains in the field including the fertile.
Gramene:pankaj_jaiswal
IRRI:SES
Response by the plant in terms of resistivity or sensitivity to the animals infesting them.
plant_trait_ontology
pest resistance (related)
TO:0000054
animal damage resistance
Response by the plant in terms of resistivity or sensitivity to the animals infesting them.
Gramene:pankaj_jaiswal
A leaf lamina morphology trait (TO:0000829) which is the extent of pubescence (presence of hairs) on a leaf lamina (PO:0020039).
PATO:0001320
plant_trait_ontology
LBP (related)
LFLHR (related)
LFLPUBES (related)
leaf blade pubescence (related)
TO:0000055
Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down.
leaf lamina pubescence
A leaf lamina morphology trait (TO:0000829) which is the extent of pubescence (presence of hairs) on a leaf lamina (PO:0020039).
IRRI:SES
A stem morphology trait (TO:0000361) which is the color of a stem (PO:0009047).
PATO:0000014
plant_trait_ontology
TO:0000056
Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts.
stem color
A stem morphology trait (TO:0000361) which is the color of a stem (PO:0009047).
Gramene:pankaj_jaiswal
PO:0009047
TO:moorel
plant_trait_ontology
TO:0000057
grain moisture
A chemical stress sensitivity (TO:0000482) which is the tolerance exhibited by a plant towards the applied herbicide.
PECO:0007183
plant_trait_ontology
herbicide tolerance (related)
weedicide tolerance (related)
TO:0000058
It is expected that the herbicide application must not affect the agronomic yield, if any.
herbicide sensitivity
A chemical stress sensitivity (TO:0000482) which is the tolerance exhibited by a plant towards the applied herbicide.
Gramene:pankaj_jaiswal
TO:moorel
Color of the stem node.
plant_trait_ontology
NDCL (related)
TO:0000059
node color
true
true
Color of the stem node.
Gramene:pankaj_jaiswal
Abortion at uni-nucleate stage of microspore development.
plant_trait_ontology
UNUABR (related)
TO:0000060
An example is CMS-WA in rice.
aborted uni-nucleate stage
Abortion at uni-nucleate stage of microspore development.
Gramene:pankaj_jaiswal
IRRI:SES
plant_trait_ontology
brittle node (related)
TO:0000061
node shattering
plant_trait_ontology
TO:0000062
phenol reaction
plant_trait_ontology
MIRP (related)
disease mimic response (related)
lesion mimic (related)
TO:0000063
mimic response
A whole plant morphology trait (TO:0000398) which is a quality of a plant embryo (PO:0009009).
TO_GIT:140
plant_trait_ontology
TO:0000064
plant embryo morphology trait
A whole plant morphology trait (TO:0000398) which is a quality of a plant embryo (PO:0009009).
PO:0009009
TO:moorel
A root morphology trait (TO:0000043) which is the color of a root (PO:0009005).
plant_trait_ontology
RTCL (related)
TO:0000065
root color
A root morphology trait (TO:0000043) which is the color of a root (PO:0009005).
Gramene:pankaj_jaiswal
OBSOLETE.
plant_trait_ontology
TO:0000066
OBSOLETE spot disease
true
Temperature sensitive male sterility, affected by environment.
plant_trait_ontology
TGMS (related)
thermo sensitive genic male sterility (related)
TO:0000067
genic male sterility-thermo sensitive
Temperature sensitive male sterility, affected by environment.
Gramene:pankaj_jaiswal
IRRI:SES
Measure of percentage of plants that lodged.
plant_trait_ontology
LOI (related)
Lg (related)
TO:0000068
lodging incidence
Measure of percentage of plants that lodged.
IRRI:SES
A leaf color (TO:0000326) trait where the leaf (PO:0009025) has areas of green and non-green tissue.
plant_trait_ontology
albino leaf striping (related)
leaf stripes (related)
TO:0000069
variegated leaf
A leaf color (TO:0000326) trait where the leaf (PO:0009025) has areas of green and non-green tissue.
TO:cooperl
Variegated leaf necrosis or scorching observed in response to stresses like drought, insecticides and cold temperature as evidenced by chlorotic and/or necrotic tissue.
plant_trait_ontology
VLFNEC (related)
ragged leaf (related)
TO:0000070
In maize this trait is observed for chlorotic tissue between veins or older leaves, causing holes and torn appearance.
variegated leaf necrosis
Variegated leaf necrosis or scorching observed in response to stresses like drought, insecticides and cold temperature as evidenced by chlorotic and/or necrotic tissue.
Gramene:pankaj_jaiswal
The anthocyanin content in a plant or plant part.
plant_trait_ontology
ANTHCN (related)
TO:0000071
Anthocyanin is the red to purple pigments composed of soluble glycosides of anthocyanidins, present in leaves and floral tissue. Usually the pigment is produced under stress conditions. Amounts of anthocyanin produced depend on stored sugar and sunlight. The more stored sugar in the leaf and brighter the autumn days, the more intense red. Anthocyanin production also increases as phosphates move out of the leaves; the lack of phosphates in young leaves can also lead to the production of anthocyanin.
anthocyanin content
The anthocyanin content in a plant or plant part.
ISBN:198506732
An awn morphology trait (TO:0002718) which is the length of awn (PO:0025349).
PATO:0000122
plant_trait_ontology
AWNLG (related)
An (related)
awning (related)
TO:0000072
Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points.
awn length
An awn morphology trait (TO:0002718) which is the length of awn (PO:0025349).
IRRI:SES
PO:0025349
TO:moorel
Sensitivity to the manganese content in the growth medium. It is important for activation of some enzymes and role in metal ion homeostasis.
plant_trait_ontology
MNSN (related)
TO:0000073
manganese sensitivity
Sensitivity to the manganese content in the growth medium. It is important for activation of some enzymes and role in metal ion homeostasis.
Gramene:pankaj_jaiswal
Causal agent: Magnaporthe grisea.
TO_GIT:69
blast disease resistance trait (exact)
blast disease susceptibility (narrow)
plant_trait_ontology
TO:0000074
blast disease resistance
Causal agent: Magnaporthe grisea.
Gramene:pankaj_jaiswal
Response shown by the plant in terms of sensitivity to light stress (quality and quantity of light).
plant_trait_ontology
TO:0000075
light sensitivity
Response shown by the plant in terms of sensitivity to light stress (quality and quantity of light).
Gramene:pankaj_jaiswal
OBSOLETE. The instances define various distinguishing trait features associated with inflorescence and its instances.
plant_trait_ontology
TO:0000076
OBSOLETE inflorescence feature
true
OBSOLETE. The instances define various distinguishing trait features associated with inflorescence and its instances.
Gramene:pankaj_jaiswal
A collective plant organ structure morphology trait (TO:0000842) which is a quality of a shoot system (PO:0009006).
jaiswalp
TO_GIT:57
plant_trait_ontology
TO:0000077
Does not include traits of fruit, parts of fruit and adventitious roots which are borne on the shoot.
shoot system morphology trait
A collective plant organ structure morphology trait (TO:0000842) which is a quality of a shoot system (PO:0009006).
Gramene:pankaj_jaiswal
PO:0009006
TO:cooperl
The average dry weight of the root determined in a study.
plant_trait_ontology
RTDWT (related)
rdw (related)
rdw/t (related)
root dry weight per tiller (related)
total root dry weight (related)
TO:0000078
root dry weight
The average dry weight of the root determined in a study.
Gramene:jcl
Gramene:pankaj_jaiswal
A bract morphology trait (TO:0000815) which is a quality of a flower bract (PO:0009034).
cooperl
TO_GIT:390
plant_trait_ontology
TO:0000079
flower bract morphology trait
A bract morphology trait (TO:0000815) which is a quality of a flower bract (PO:0009034).
Gramene:pankaj_jaiswal
PO:0009034
TO:cooperl
Sensitivity response shown by the plant grown in either the excess or deficient amount of the micronutrient in the growth medium (soil).
plant_trait_ontology
micronutrient deficiency (related)
TO:0000080
micronutrient sensitivity
Sensitivity response shown by the plant grown in either the excess or deficient amount of the micronutrient in the growth medium (soil).
Gramene:pankaj_jaiswal
The average dry weight of the root, (for the root part 30cm below the soil surface) determined per tiller in a green house study.
DRTDWT (exact)
deep root dry weight per tiller (exact)
deep root weight (exact)
drw (exact)
drw/t (exact)
plant_trait_ontology
TO:0000081
deep root dry weight
The average dry weight of the root, (for the root part 30cm below the soil surface) determined per tiller in a green house study.
Gramene:jcl
Gramene:pankaj_jaiswal
Causal agent: Recilia dorsalis (Motschulsky).
plant_trait_ontology
ZLFHRS (related)
TO:0000082
zigzag leafhopper resistance
Causal agent: Recilia dorsalis (Motschulsky).
Gramene:pankaj_jaiswal
Its the total number of roots penetrating the hard pans of the soil or the number of roots penetrated through the wax-petrolatum layer measured at 50 days after sowing (DAS).
plant_trait_ontology
PENRTNB (related)
npr (related)
number of penetrating roots (related)
TO:0000083
penetrated root number
Its the total number of roots penetrating the hard pans of the soil or the number of roots penetrated through the wax-petrolatum layer measured at 50 days after sowing (DAS).
Gramene:jcl
Gramene:pankaj_jaiswal
A root system morphology trait (TO:0000985) which is the number of roots (PO:0009005) in a root system (PO:0025025).
plant_trait_ontology
RTNB (related)
tnr (related)
TO:0000084
root number
A root system morphology trait (TO:0000985) which is the number of roots (PO:0009005) in a root system (PO:0025025).
Gramene:jcl
Gramene:pankaj_jaiswal
PATO:0001555
TO:cooperl
TO_GIT:357
A leaf morphology trait (TO:0000748) which is the rolling of a leaf preceding the leaf drying stage.
plant_trait_ontology
LFRL (related)
wilting (related)
TO:0000085
Leaf rolling is a feature observed in response to stresses like drought, water and temperature. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
leaf rolling
A leaf morphology trait (TO:0000748) which is the rolling of a leaf preceding the leaf drying stage.
Gramene:jcl
Gramene:pankaj_jaiswal
TO:moorel
Causal agent: Sarocladium oryzae. Symptoms: oblong or irregular brown to grey lesions on the leaf sheath near panicle; sometimes coalescing to prevent emergence of panicle.
plant_trait_ontology
SHROTRS (related)
ShR (related)
TO:0000086
sheath rot disease resistance
Causal agent: Sarocladium oryzae. Symptoms: oblong or irregular brown to grey lesions on the leaf sheath near panicle; sometimes coalescing to prevent emergence of panicle.
Gramene:pankaj_jaiswal
IRRI:SES
The aroma of the cooked/uncooked grains.
scent (exact)
plant_trait_ontology
AROMA (related)
Sct (related)
odour (related)
TO:0000087
It is often associated with the accumulation of the aromatic compound 2-acetyl-1-pyrroline.
grain aroma trait
The aroma of the cooked/uncooked grains.
Gramene:pankaj_jaiswal
IRRI:SES
Causal agent: rice yellow mottle virus (RYMV). Symptoms: stunting, reduced tillering, mottling and yellowish streaking of the leaves, delayed flowering or incomplete emergence of the panicle; in extreme cases, death of plants.
plant_trait_ontology
RYMV (related)
RYMVRS (related)
TO:0000088
rice yellow mottle virus resistance
Causal agent: rice yellow mottle virus (RYMV). Symptoms: stunting, reduced tillering, mottling and yellowish streaking of the leaves, delayed flowering or incomplete emergence of the panicle; in extreme cases, death of plants.
Gramene:pankaj_jaiswal
IRRI:SES
A panicle inflorescence morphology trait (TO:0000847) which is the mode of branching, angle of primary branches, and spikelet density of a panicle inflorescence (PO:0030123).
plant_trait_ontology
PNTYPE (related)
PnT (related)
panicle attitude of branches (related)
TO:0000089
panicle inflorescence type
A panicle inflorescence morphology trait (TO:0000847) which is the mode of branching, angle of primary branches, and spikelet density of a panicle inflorescence (PO:0030123).
IRRI:SES
TO:moorel
At 50 days after sowing (DAS), the thickness of roots penetrated through the wax-petrolatum layer is measured. Penetrated root thickness is measured on penetrated roots immediately below the wax layer.
plant_trait_ontology
PENRTTH (related)
prt (related)
TO:0000090
penetrated root thickness
At 50 days after sowing (DAS), the thickness of roots penetrated through the wax-petrolatum layer is measured. Penetrated root thickness is measured on penetrated roots immediately below the wax layer.
Gramene:jcl
Gramene:pankaj_jaiswal
OBSOLETE.
plant_trait_ontology
TO:0000091
OBSOLETE leafhopper
true
The ratio of deep root length (for the roots found 30cm below the soil surface) and the shoot length determined in a study.
plant_trait_ontology
DRTSHRO (related)
deep root length to shoot length ratio (related)
deep root ratio (related)
deep root/shoot ratio (related)
dr/s (related)
TO:0000092
deep root to shoot ratio
The ratio of deep root length (for the roots found 30cm below the soil surface) and the shoot length determined in a study.
Gramene:pankaj_jaiswal
A drought related trait (TO:0000394) which is a measure of the pulling force required to uproot the plant.
plant_trait_ontology
RTPF (related)
rpf (related)
TO:0000093
Root pulling force is correlated with root weight (TO:0000279), root branching (TO:0000257) and thick root number. It is a measure of the drought resistance and is often evaluatred on rice seedlings.
root pulling force
A drought related trait (TO:0000394) which is a measure of the pulling force required to uproot the plant.
TO:cooperl
The thickness of the root present 2cm below the soil surface.
plant_trait_ontology
BARTTH (related)
brt (related)
TO:0000094
basal root thickness
The thickness of the root present 2cm below the soil surface.
Gramene:jcl
Gramene:pankaj_jaiswal
Sensitivity to the osmoticum in the growth medium.
plant_trait_ontology
OSRPSN (related)
oa (related)
TO:0000095
osmotic response sensitivity
Sensitivity to the osmoticum in the growth medium.
Gramene:pankaj_jaiswal
Regeneration of the main stem and tillers after harvesting in a grass plant.
plant_trait_ontology
RAAB (related)
TO:0000096
ratooning ability
Regeneration of the main stem and tillers after harvesting in a grass plant.
Gramene:jn
Gramene:pankaj_jaiswal
Amount of amylopectin present in the plant or plant part.
plant_trait_ontology
AMYPCTCN (related)
TO:0000097
It is a polysaccharide present in starch. Amylopectin is a polymer of alpha(1,4)-linked glucose units, as is amylose (see amylose). Unlike amylose, amylopectin contains branches of 2430 glucose units connected to the main chain by an alpha(1,6) linkage.
amylopectin content
Amount of amylopectin present in the plant or plant part.
ISBN:198506732
An endosperm morphology trait (TO:0000575) which is an opaque and hard endosperm (PO:0009089) with low or no amylose content (TO:0000196).
TO_GIT:133
plant_trait_ontology
opaque endosperm (related)
waxy endosperm (related)
TO:0000098
If the endosperm has high amount of amylose it is called as non-glutinous endosperm. This is also an endosperm quality trait (TO:0000587).
glutinous endosperm
An endosperm morphology trait (TO:0000575) which is an opaque and hard endosperm (PO:0009089) with low or no amylose content (TO:0000196).
Gramene:pankaj_jaiswal
PO:0009089
TO:moorel
An endosperm morphology trait (TO:0000575) which is a wrinkled and glassy endosperm (PO:0009089) when dry.
TO_GIT:133
plant_trait_ontology
sugary kernel (related)
TO:0000099
This is also an endosperm quality trait (TO:0000587).
sugary endosperm
An endosperm morphology trait (TO:0000575) which is a wrinkled and glassy endosperm (PO:0009089) when dry.
Gramene:pankaj_jaiswal
PO:0009089
TO:moorel
An endosperm morphology trait (TO:0000575) which is a shrunken and opaque endosperm (PO:0009089).
PATO:0000585
TO_GIT:133
plant_trait_ontology
collapsed kernel (related)
transluscent kernel (related)
TO:0000100
This is also an endosperm quality trait (TO:0000587). Refers to shrunken PATO:0000585 A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced size of a cell or constituent group of cells (for example, organ).
shrunken endosperm
An endosperm morphology trait (TO:0000575) which is a shrunken and opaque endosperm (PO:0009089).
Gramene:pankaj_jaiswal
PO:0009089
TO:moorel
A common sedge weed Monochoria vaginalis (monochoria), California arrowhead Sagittaria montevidensis, Gregg arrowhead Sagittaria longiloba, Ducksalad Heteranthera limosa, Echinodorus berteroi and E. cordifolius (Burhead), Ammannia spp (Redstems), Bacopa spp. (Water hyssops), Alisma plantago-aquatica (Common water plantain). Grows as a weed in the rice field. Can be distinguished from rice plant by the leaf shape, venation, stem cross-section and plant shape leaf shape.
plant_trait_ontology
TO:0000101
broad-leaved weed
A common sedge weed Monochoria vaginalis (monochoria), California arrowhead Sagittaria montevidensis, Gregg arrowhead Sagittaria longiloba, Ducksalad Heteranthera limosa, Echinodorus berteroi and E. cordifolius (Burhead), Ammannia spp (Redstems), Bacopa spp. (Water hyssops), Alisma plantago-aquatica (Common water plantain). Grows as a weed in the rice field. Can be distinguished from rice plant by the leaf shape, venation, stem cross-section and plant shape leaf shape.
Gramene:pankaj_jaiswal
ISBN:9712200299
http://www.ipm.ucdavis.edu/PMG/r682700999.html
Sensitivity to the phosphorus content in the growth medium. It is important in various biochemical pathways and storage of energy.
plant_trait_ontology
PDef (related)
PHOSN (related)
phosphorus deficiency (related)
TO:0000102
phosphorus sensitivity
Sensitivity to the phosphorus content in the growth medium. It is important in various biochemical pathways and storage of energy.
IRRI:SES
The sensitivity response shown by the plant growing in a stagnant water for a long period of time (not unlike deepwater presence during flash flooding of the fields).
plant_trait_ontology
DWSTR (related)
deep water stress (related)
TO:0000103
deepwater stress
The sensitivity response shown by the plant growing in a stagnant water for a long period of time (not unlike deepwater presence during flash flooding of the fields).
Gramene:pankaj_jaiswal
An endosperm morphology trait (TO:0000575) which is an opaque and soft endosperm (PO:0009089).
TO_GIT:133
plant_trait_ontology
TO:0000104
This is also an endosperm quality trait (TO:0000587).
floury endosperm
An endosperm morphology trait (TO:0000575) which is an opaque and soft endosperm (PO:0009089).
Gramene:pankaj_jaiswal
PO:0009089
TO:moorel
An endosperm morphology trait (TO:0000575) which is a glassy and tarnished endosperm (PO:0009089) with low amylose content (TO:0000196).
TO_GIT:133
plant_trait_ontology
glassy endosperm (related)
TO:0000105
This is also an endosperm quality trait (TO:0000587).
dull endosperm
An endosperm morphology trait (TO:0000575) which is a glassy and tarnished endosperm (PO:0009089) with low amylose content (TO:0000196).
Gramene:pankaj_jaiswal
PO:0009089
TO:moorel
Represents the different types of male sterility found in plants.
plant_trait_ontology
MS (related)
TO:0000106
male sterility type
Represents the different types of male sterility found in plants.
Gramene:pankaj_jaiswal
Assay for the amount of 13kDa seed storage protein present in the endosperm.
plant_trait_ontology
TO:0000107
endosperm storage protein-1 content
Assay for the amount of 13kDa seed storage protein present in the endosperm.
Gramene:pankaj_jaiswal
A leaf growth and development trait (TO:0000655) which is the extent of leaf shattering based on the development of a leaf abscission zone (PO:0006501).
GO:0060866
plant_trait_ontology
LFSH (related)
leaf abscission (related)
TO:0000108
The leaf shattering trait is the occurence of the biological process of leaf abscission (GO:0060866): the controlled shedding of a leaf.
leaf shattering
A leaf growth and development trait (TO:0000655) which is the extent of leaf shattering based on the development of a leaf abscission zone (PO:0006501).
Gramene:pankaj_jaiswal
PO:0006501
TO:cooperl
leaf abscission (related)
GO:0060866
SOY:0001342
Assay for amount of 57kDa seed storage protein present in the endosperm.
plant_trait_ontology
TO:0000109
endosperm storage protein-2 content
Assay for amount of 57kDa seed storage protein present in the endosperm.
Gramene:pankaj_jaiswal
Abortion of microspore development at uni-nucleate stage.
plant_trait_ontology
CMS-WA (related)
WACMS (related)
TO:0000110
wild abortive CMS
Abortion of microspore development at uni-nucleate stage.
Gramene:pankaj_jaiswal
IRRI:SES
The sterility induced by transgenes expressing cytotoxic component.
plant_trait_ontology
TO:0000111
genetically engineered male sterility
The sterility induced by transgenes expressing cytotoxic component.
Gramene:pankaj_jaiswal
IRRI:SES
An assay to determine the resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a pathogen infection as compared to the susceptible and/or the reference plants of the same species.
disease control (exact)
disease resistance trait (exact)
disease tolerance (exact)
disease susceptibility (narrow)
plant_trait_ontology
TO:0000112
It represents the damage done by the diease and/or the pathogen to the plant. The damage is a direct measure of resistance to the particular pathogen variety causing the disease.
disease resistance
An assay to determine the resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a pathogen infection as compared to the susceptible and/or the reference plants of the same species.
Gramene:pankaj_jaiswal
An embryo shape trait (TO:0000193) that is a large sized plant embryo (PO:0009009).
plant_trait_ontology
TO:0000113
giant embryo
true
true
true
An embryo shape trait (TO:0000193) that is a large sized plant embryo (PO:0009009).
Gramene:pankaj_jaiswal
PO:0009009
TO:moorel
plant_trait_ontology
TO:0000114
flooding related trait
Determined as the dry mass of roots per unit soil volume at a given soil section.
plant_trait_ontology
RTMD (related)
rmd (related)
TO:0000115
root mass density
Determined as the dry mass of roots per unit soil volume at a given soil section.
Gramene:pankaj_jaiswal
Root mass density 0-15 cm was calculated as the dry mass of roots per unit soil volume at 0-15 cm soil section.
plant_trait_ontology
rmd 0-15 (related)
TO:0000116
root mass density 0-15
Root mass density 0-15 cm was calculated as the dry mass of roots per unit soil volume at 0-15 cm soil section.
Gramene:jcl
Gramene:pankaj_jaiswal
Since there is no genetic resistance to rats, the damage can be quantified as it does not represent resistance.
plant_trait_ontology
RD (related)
TO:0000117
rat damage resistance
Since there is no genetic resistance to rats, the damage can be quantified as it does not represent resistance.
Gramene:pankaj_jaiswal
IRRI:SES
Root mass density 15-30 cm was calculated as the dry mass of roots per unit soil volume at 15-30 cm soil section.
plant_trait_ontology
rmd 15-30 (related)
TO:0000118
root mass density 15-30
Root mass density 15-30 cm was calculated as the dry mass of roots per unit soil volume at 15-30 cm soil section.
Gramene:jcl
Gramene:pankaj_jaiswal
Root mass density 30-45 cm was calculated as the dry mass of roots per unit soil volume at 30-45 cm soil section.
plant_trait_ontology
rmd 30-45 (related)
TO:0000119
root mass density 30-45
Root mass density 30-45 cm was calculated as the dry mass of roots per unit soil volume at 30-45 cm soil section.
Gramene:jcl
Gramene:pankaj_jaiswal
Calculated as percent of root mass density over the total root mass density. Both parameters scored at the same depth.
plant_trait_ontology
PCENTRTMD (related)
prmd (related)
TO:0000120
percent root mass density
Calculated as percent of root mass density over the total root mass density. Both parameters scored at the same depth.
Gramene:pankaj_jaiswal
Causal agent: the stem nematode Dictylenchus angustus. Symptoms: leaf mottling or chlorotic discoloration in a splash pattern at base of young leaves in stem elongation or mid-tillering stage; brown stains may develop on leaves and sheaths which later intensify to a dark brown color. A characteristic distortion consisting of twisting and withering of young leaves. A distortion of panicle which either remains enclosed with in a swollen sheath, partially emerge but are twisted and with unfilled grains or emerge completely but with unfilled grains and resembling a whitehead.
plant_trait_ontology
U (related)
TO:0000121
Evaluated at growth stage:6-7 in rice.
ufra damage
Causal agent: the stem nematode Dictylenchus angustus. Symptoms: leaf mottling or chlorotic discoloration in a splash pattern at base of young leaves in stem elongation or mid-tillering stage; brown stains may develop on leaves and sheaths which later intensify to a dark brown color. A characteristic distortion consisting of twisting and withering of young leaves. A distortion of panicle which either remains enclosed with in a swollen sheath, partially emerge but are twisted and with unfilled grains or emerge completely but with unfilled grains and resembling a whitehead.
Gramene:pankaj_jaiswal
IRRI:SES
Calculated as percent of root mass density in this section over the total root mass density. Both scored at the 0-15cm depth.
plant_trait_ontology
prmd 0-15 (related)
TO:0000122
percent root mass density 0-15
Calculated as percent of root mass density in this section over the total root mass density. Both scored at the 0-15cm depth.
Gramene:jcl
Gramene:pankaj_jaiswal
Calculated as percent of root mass density in this section over the total root mass density. Both scored at the 15-30cm depth.
plant_trait_ontology
prmd 15-30 (related)
TO:0000123
percent root mass density 15-30
Calculated as percent of root mass density in this section over the total root mass density. Both scored at the 15-30cm depth.
Gramene:jcl
Gramene:pankaj_jaiswal
A flag leaf morphology trait (TO:0000832) which is an angle of the flag leaf (PO:0020103) measured near the collar, as the angle of attachment between the flag leaf blade and the main inflorescence axis in grass plants.
plant_trait_ontology
FLFAG (related)
TO:0000124
flag leaf angle
A flag leaf morphology trait (TO:0000832) which is an angle of the flag leaf (PO:0020103) measured near the collar, as the angle of attachment between the flag leaf blade and the main inflorescence axis in grass plants.
IRRI:SES
PO:0020103
TO:cooperl
TO:moorel
Calculated as percent of root mass density in this section over the total root mass density. Both scored at the 30-45cm depth.
plant_trait_ontology
prmd 30-45 (related)
TO:0000125
percent root mass density 30-45
Calculated as percent of root mass density in this section over the total root mass density. Both scored at the 30-45cm depth.
Gramene:jcl
Gramene:pankaj_jaiswal
Causal agent: rice grassy stunt virus 2 (RGSV2). Symptoms: RGSV2 causes severe stunting, excessive tillering, yellow to orange and narrow leaves with small rusty spots.
plant_trait_ontology
RGSV2 (related)
RGSV2RS (related)
TO:0000126
rice grassy stunt virus-2 resistance
Causal agent: rice grassy stunt virus 2 (RGSV2). Symptoms: RGSV2 causes severe stunting, excessive tillering, yellow to orange and narrow leaves with small rusty spots.
Gramene:pankaj_jaiswal
Causal agent: rice grassy stunt virus 1 (RGSV1). Symptoms: RGSV1 causes severe stunting, excessive tillering, pale green to yellow and narrow leaves with small rusty spots.
plant_trait_ontology
RGSV1 (related)
RGSV1RS (related)
TO:0000127
rice grassy stunt virus-1 resistance
Causal agent: rice grassy stunt virus 1 (RGSV1). Symptoms: RGSV1 causes severe stunting, excessive tillering, pale green to yellow and narrow leaves with small rusty spots.
Gramene:pankaj_jaiswal
Proportion of usable (economically significant) biomass over total (biological) biomass, expressed as a percentage.
plant_trait_ontology
HI (related)
HVID (related)
TO:0000128
harvest index
Proportion of usable (economically significant) biomass over total (biological) biomass, expressed as a percentage.
Gramene:jcl
Gramene:pankaj_jaiswal
Causal agent: Ustilaginoidea virens. Symptoms: infected grains are transformed into yellow-greenish or greenish-black velvety-looking spore balls.
plant_trait_ontology
FSRS (related)
FSm (related)
TO:0000129
false smut disease resistance
Causal agent: Ustilaginoidea virens. Symptoms: infected grains are transformed into yellow-greenish or greenish-black velvety-looking spore balls.
Gramene:pankaj_jaiswal
IRRI:SES
Sensitivity to the far red light content in the growth environment.
plant_trait_ontology
FRLTSN (related)
Pfr light sensitivity (related)
TO:0000130
far red light sensitivity
Sensitivity to the far red light content in the growth environment.
Gramene:pankaj_jaiswal
Water potential of a leaf.
plant_trait_ontology
LFWP (related)
lwp (related)
TO:0000131
leaf water potential
Water potential of a leaf.
Gramene:pankaj_jaiswal
Actual measurements in millimeters from the outer diameter of the stem at the basal portion of the main stem.
plant_trait_ontology
BAINDIA (related)
DBI (related)
TO:0000132
basal internode diameter
Actual measurements in millimeters from the outer diameter of the stem at the basal portion of the main stem.
IRRI:SES
OBSOLETE: A subjective assessment of the plant in similar site and growing conditions (often unfavorable conditions) based upon a specific facet of growth.
jaiswalp
plant_trait_ontology
TO:0000133
OBSOLETE stature or vigor trait
true
OBSOLETE: A subjective assessment of the plant in similar site and growing conditions (often unfavorable conditions) based upon a specific facet of growth.
Gramene:pankaj_jaiswal
Is an indirect measure of gelatinization temperature. Observed by placing six milled-rice kernels in 10ml 1.7% KOH in a shallow container and arrange them so that they do not touch. Let them stand for 23hrs at 30degC temperature and score for spreading. Measure for Alkali digestion is inversely proportional to the gelatinization temperature, e.g. if alkali digestion is low, the gelatinization temperature is high.
plant_trait_ontology
ALKDIG (related)
AlkD (related)
TO:0000134
alkali digestion
Is an indirect measure of gelatinization temperature. Observed by placing six milled-rice kernels in 10ml 1.7% KOH in a shallow container and arrange them so that they do not touch. Let them stand for 23hrs at 30degC temperature and score for spreading. Measure for Alkali digestion is inversely proportional to the gelatinization temperature, e.g. if alkali digestion is low, the gelatinization temperature is high.
Gramene:pankaj_jaiswal
IRRI:SES
A leaf morphology trait (TO:0000748) which is the length of a leaf (PO:0025034).
MaizeGDB_QTL:61715
PATO:0000122
TO_GIT:247
plant_trait_ontology
LFLG (related)
LL (related)
lfln (related)
TO:0000135
Actual measurements, in centimeters of the leaf. Refers to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. In maize, this is measured in centimeters. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
leaf length
A leaf morphology trait (TO:0000748) which is the length of a leaf (PO:0025034).
IRRI:SES
PO:0025034
TO:cooperl
TO:moorel
lfln (related)
MaizeGDB_QTL:61715
Leaf relative water content is determined at midday (12.00 noon).
plant_trait_ontology
RELWCN (related)
leaf relative water content (related)
rec (related)
TO:0000136
leaf relative water content
Leaf relative water content is determined at midday (12.00 noon).
Gramene:jcl
Gramene:pankaj_jaiswal
Number of days required for the inflorescence (head/cob/panicle) to emerge from the flag leaf of a plant or a group of plants in a study.
plant_trait_ontology
DTHD (related)
heading date (related)
TO:0000137
Often determined when the 50% length of the inflorescence has emerged as compared to its full length. Number of days is calculated from either the day of sowing of seeds or from the day of transplanting the seedlings (in case of rice) depending on type of study.
days to heading
Number of days required for the inflorescence (head/cob/panicle) to emerge from the flag leaf of a plant or a group of plants in a study.
Gramene:pankaj_jaiswal
Total protein content of the brown rice.
plant_trait_ontology
BRWRPROT (related)
BrP (related)
Prt (related)
brown rice protein content (related)
TO:0000138
brown rice protein
Total protein content of the brown rice.
IRRI:SES
true
A cardinal organ part morphology trait (TO:0000754) which is the color of a lemma apiculus (PO:0025616).
plant_trait_ontology
APICL (related)
ApC (related)
TO:0000140
lemma apiculus color
A cardinal organ part morphology trait (TO:0000754) which is the color of a lemma apiculus (PO:0025616).
IRRI:SES
An awn morphology trait (TO:0002718) which is a color of the awn (PO:0025349).
PATO:0000014
plant_trait_ontology
AWNCL (related)
TO:0000141
Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts.
awn color
An awn morphology trait (TO:0002718) which is a color of the awn (PO:0025349).
IRRI:SES
PO:0025349
TO:moorel
An inflorescence branching (TO:0000050) trait which is the extent of secondary branching that usually determines the shape and compactness of the inflorescence (PO:0009049) (such as in rice panicle).
plant_trait_ontology
PnBr (related)
SBR (related)
panicle secondary branching (related)
secondary branching of panicle (related)
TO:0000142
secondary branching of inflorescence
An inflorescence branching (TO:0000050) trait which is the extent of secondary branching that usually determines the shape and compactness of the inflorescence (PO:0009049) (such as in rice panicle).
Gramene:pankaj_jaiswal
IRRI:SES
PO:0009049
TO:moorel
Relative yield was calculated as the ratio of biomass in stress to that of control.
plant_trait_ontology
RB (related)
RELBIOM (related)
relative biomass yield (related)
TO:0000143
relative biomass
Relative yield was calculated as the ratio of biomass in stress to that of control.
Gramene:jcl
Gramene:pankaj_jaiswal
A grain yield trait (TO:0000396) which is the proportion of kernels remaining after milling to remove the bran.
plant_trait_ontology
MR (related)
milled rice ratio (related)
TO:0000144
Milling is part of rice processing where the caryopsis hull (PO:0006000) and bran is removed. Milled rice consists of the broken kernels as well as the head rice (whole or 3/4 of original length or longer) milled kernels.
milled rice yield
A grain yield trait (TO:0000396) which is the proportion of kernels remaining after milling to remove the bran.
https://ricecap.hosted.uark.edu/glossary_ricecaplist.htm#M
A shoot axis internode morphology trait (TO:0000755) which is the length of a shoot axis internode (PO:0005005).
plant_trait_ontology
INLG (related)
TO:0000145
shoot axis internode length
A shoot axis internode morphology trait (TO:0000755) which is the length of a shoot axis internode (PO:0005005).
Gramene:pankaj_jaiswal
A seed morphology trait (TO:0000184) which is the length of a seed (PO:0009010).
TO:0000395
PATO:0000122
TO_GIT:195
plant_trait_ontology
SDLG (related)
TO:0000146
Seed length is a component of seed size (TO:0000391) and has a component of seed quality (TO:0000162). Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
seed length
A seed morphology trait (TO:0000184) which is the length of a seed (PO:0009010).
Gramene:pankaj_jaiswal
IRRI:SES
PO:0009010
TO:moorel
Causal agent: rice hoja blanca virus (RHBV). Symptoms: cream colored to yellow spots, elongating and coalescing to form longitudinal yellowish green to pale green striations. Streaks may coalesce to cover the whole leaf. Brown and sterile glumes with typical "parrot beak" shape of deformation.
plant_trait_ontology
HBVRS (related)
RHBV (related)
TO:0000147
rice hoja blanca disease resistance
Causal agent: rice hoja blanca virus (RHBV). Symptoms: cream colored to yellow spots, elongating and coalescing to form longitudinal yellowish green to pale green striations. Streaks may coalesce to cover the whole leaf. Brown and sterile glumes with typical "parrot beak" shape of deformation.
Gramene:pankaj_jaiswal
IRRI:SES
An assay to determine the resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a viral pathogen infection as compared to the susceptible and/or the reference plants of the same species.
plant_trait_ontology
TO:0000148
It represents the damage done by the diease and/or the viral pathogen to the plant. The damage is a direct measure of resistance to the particular viral strain causing the diease.
viral disease resistance
An assay to determine the resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a viral pathogen infection as compared to the susceptible and/or the reference plants of the same species.
Gramene:pankaj_jaiswal
IRRI:SES
A seed morphology trait (TO:0000184) which is the width of a seed (PO:0009010).
PATO:0000921
TO_GIT:194
plant_trait_ontology
SDWD (related)
plump seed (related)
TO:0000149
Seed width is measured in millimeters as the distance across the seed and is a component of the seed size (TO:0000391) and can be a component of seed quality (TO:0000162). Refers to (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite.
seed width
A seed morphology trait (TO:0000184) which is the width of a seed (PO:0009010).
Gramene:pankaj_jaiswal
IRRI:SES
PO:0009010
TO:moorel
true
Causal agent: Pelopidas mathias (Fabricius) and Parnara guttata.
plant_trait_ontology
SKIPRS (related)
TO:0000151
rice skipper resistance
Causal agent: Pelopidas mathias (Fabricius) and Parnara guttata.
Gramene:pankaj_jaiswal
A panicle morphology trait (TO:0000847) which is the average number of panicles per plant in a study.
plant_trait_ontology
NOP (related)
NP (related)
PN (related)
PNNB (related)
TP (related)
number of effective tiller per plant (related)
number of panicle (related)
panicle number per plant (related)
panicle number per tiller (related)
seed setting tillers per plant (related)
spike number (related)
TO:0000152
panicle number
A panicle morphology trait (TO:0000847) which is the average number of panicles per plant in a study.
Gramene:pankaj_jaiswal
TO:moorel
Relative yield is calculated as a ratio of yield in stress to that of control.
plant_trait_ontology
RELYLD (related)
RY (related)
TO:0000153
relative yield
Relative yield is calculated as a ratio of yield in stress to that of control.
Gramene:jcl
Gramene:pankaj_jaiswal
Causal agent: Stenchaetothrips biformis. monitored at growth stage 2-3.
plant_trait_ontology
THRIPSRS (related)
TO:0000154
thrips resistance
Causal agent: Stenchaetothrips biformis. monitored at growth stage 2-3.
Gramene:pankaj_jaiswal
IRRI:SES
The index is calculated as, DSI = (1-Yds/Yns), where Yds and Yns are mean yields of a given genotype in drought susceptible (DS) and non-susceptible (NS) environments respectively.
plant_trait_ontology
DRSID (related)
DRSSID (related)
DSI (related)
drought score (related)
drought sensitivity index (related)
TO:0000155
drought susceptibility index
The index is calculated as, DSI = (1-Yds/Yns), where Yds and Yns are mean yields of a given genotype in drought susceptible (DS) and non-susceptible (NS) environments respectively.
Gramene:jcl
Gramene:pankaj_jaiswal
At 50 days after sowing (DAS), the dry weight of roots penetrated through the wax-petrolatum layer is measured.
plant_trait_ontology
PENRTDWT (related)
PRDW (related)
TO:0000156
penetrated root dry weight
At 50 days after sowing (DAS), the dry weight of roots penetrated through the wax-petrolatum layer is measured.
Gramene:jcl
Gramene:pankaj_jaiswal
Assay determines temperature of the leaf canopy.
plant_trait_ontology
CANTMP (related)
TO:0000157
canopy temperature
Assay determines temperature of the leaf canopy.
Gramene:jcl
Gramene:pankaj_jaiswal
Sensitivity to the red light content in the growth environment.
plant_trait_ontology
Pr light sensitivity (related)
RLTSN (related)
TO:0000158
red light sensitivity
Sensitivity to the red light content in the growth environment.
Gramene:pankaj_jaiswal
Sensitivity response observed in an environment illuminated with blue light.
plant_trait_ontology
BLTSN (related)
TO:0000159
blue light sensitivity
Sensitivity response observed in an environment illuminated with blue light.
Gramene:pankaj_jaiswal
Response shown by the plant in the presence of UV light stress.
plant_trait_ontology
UV resistance (related)
UVRS (related)
Ultraviolet light sensitivity (related)
Ultraviolet resistance (related)
TO:0000160
UV light sensitivity
Response shown by the plant in the presence of UV light stress.
Gramene:pankaj_jaiswal
Response shown by the plant in terms of sensitivity to one or more types of radiation stress (quality and quantity of light).
plant_trait_ontology
RADSN (related)
radiation sensitivity (related)
response to radiation (related)
TO:0000161
radiation response trait
Response shown by the plant in terms of sensitivity to one or more types of radiation stress (quality and quantity of light).
Gramene:pankaj_jaiswal
A fruit quality trait (TO:0002728) that is the commercial and /or economical value of the grain (i.e. fruit (PO:0009001)), or its overall improvement.
TO:0000588
TO_GIT:209
plant_trait_ontology
TO:0000162
grain quality trait
A fruit quality trait (TO:0002728) that is the commercial and /or economical value of the grain (i.e. fruit (PO:0009001)), or its overall improvement.
Gramene:pankaj_jaiswal
TO:cooperl
Response with respect to application of auxin.
plant_trait_ontology
AUXSN (related)
IAA response (related)
IAA sensitivity (related)
indole-3-acetic acid response (related)
indole-3-acetic acid sensitivity (related)
TO:0000163
The most important auxin produced by plants is indole-3-acetic acid (IAA).
auxin sensitivity
Response with respect to application of auxin.
Gramene:pankaj_jaiswal
Response by the plant in terms of resistivity or sensitivity to either the biotic or the abiotic types of stress.
plant_trait_ontology
crop damage (related)
stress resistance (related)
stress susceptibility (related)
stress tolerance (related)
TO:0000164
stress trait
Response by the plant in terms of resistivity or sensitivity to either the biotic or the abiotic types of stress.
Gramene:pankaj_jaiswal
A panicle inflorescence morphology trait (TO:0000847) which is the extent of coverage of panicle inflorescence (PO:0030123) by a sheath of a flag leaf (PO:0020103).
plant_trait_ontology
Exs (related)
PNEX (related)
TO:0000165
panicle inflorescence exsertion
A panicle inflorescence morphology trait (TO:0000847) which is the extent of coverage of panicle inflorescence (PO:0030123) by a sheath of a flag leaf (PO:0020103).
Gramene:pankaj_jaiswal
IRRI:SES
Sensitivity to the gibberellic acid content in the growth medium or on external application.
plant_trait_ontology
GA3 response (related)
GASN (related)
GB response (related)
Gibberellin response (related)
gibberellic acid response (related)
TO:0000166
gibberellic acid sensitivity
Sensitivity to the gibberellic acid content in the growth medium or on external application.
Gramene:pankaj_jaiswal
Sensitivity to the cytokinin content in the growth medium or external application.
plant_trait_ontology
CKSN (related)
TO:0000167
cytokinin sensitivity
Sensitivity to the cytokinin content in the growth medium or external application.
Gramene:pankaj_jaiswal
Response by the plant in terms of resistivity or sensitivity to abiotic stress.
plant_trait_ontology
abiotic stress tolerance (related)
TO:0000168
abiotic stress trait
Response by the plant in terms of resistivity or sensitivity to abiotic stress.
Gramene:pankaj_jaiswal
Abortion of microspore development at trinucleate stage.
plant_trait_ontology
BOROCMS (related)
CMS-boro (related)
TO:0000169
chinsurah boro CMS
Abortion of microspore development at trinucleate stage.
Gramene:pankaj_jaiswal
IRRI:SES
Some plants can elongate and grow in areas annually flooded to varying depths. The scale is based on the performance of check varieties. Specify water depth under which the data was recorded.
plant_trait_ontology
Elon (related)
TO:0000170
elongation ability
Some plants can elongate and grow in areas annually flooded to varying depths. The scale is based on the performance of check varieties. Specify water depth under which the data was recorded.
IRRI:SES
OBSOLETE. A stature and vigor trait (TO:0000133) which is the height of a whole plant (PO:0000003) or another plant structure (PO:0009011).
TO_GIT:226
plant_trait_ontology
TO:0000171
Refers to: height (PATO_0000119): A 1-D extent quality inhering in a bearer by virtue of the bearer's vertical dimension of extension.
OBSOLETE height trait
true
OBSOLETE. A stature and vigor trait (TO:0000133) which is the height of a whole plant (PO:0000003) or another plant structure (PO:0009011).
Gramene:pankaj_jaiswal
TO:cooperl
Sensitivity to the jasmonic acid content in the growth medium or on external application.
plant_trait_ontology
JASN (related)
TO:0000172
jasmonic acid sensitivity
Sensitivity to the jasmonic acid content in the growth medium or on external application.
Gramene:pankaj_jaiswal
Sensitivity to ethylene (C2H2) content in the growth medium or the environment.
plant_trait_ontology
ETHSN (related)
ethylene response (related)
TO:0000173
ethylene sensitivity
Sensitivity to ethylene (C2H2) content in the growth medium or the environment.
Gramene:pankaj_jaiswal
OBSOLETE.
plant_trait_ontology
TO:0000174
OBSOLETE maturity trait
true
A bacterial blight disease resistance (TO:0000770) that is involved in the response to rice bacterial blight disease. Causal agent: Xanthomonas oryzae pv. oryzae.
plant_trait_ontology
BB (related)
BBRS (related)
leaf blight (related)
TO:0000175
Symptoms: lesions usually start near the leaf tips or leaf margins or both, and extend down the outer edge(s). Young lesions are pale to grayish green, later turning yellow to grey (dead) with time. In very susceptible varieties, lesions may extend to the entire leaf length into the leaf sheath. Young leaves should not be inoculated for assay. Old or leaves with symptoms of nutrient deficiency or other diseases should also be avoided for inoculation.
rice bacterial blight disease resistance
A bacterial blight disease resistance (TO:0000770) that is involved in the response to rice bacterial blight disease. Causal agent: Xanthomonas oryzae pv. oryzae.
Gramene:pankaj_jaiswal
IRRI:SES
A nutrient sensitivity (TO:0000480) response shown by the plant grown in either an excess or deficient amount of the macronutrient in the growth medium.
plant_trait_ontology
macronutrient deficiency (related)
TO:0000176
macronutrient sensitivity
A nutrient sensitivity (TO:0000480) response shown by the plant grown in either an excess or deficient amount of the macronutrient in the growth medium.
Gramene:pankaj_jaiswal
An assay to determine the tolerance exhibited by a plant or a group of plants (population) towards the applied herbicide 2,4-dichlorophenoxyacetic acid (2,4 D).
PECO:0007180
plant_trait_ontology
2,4 D sensitivity (related)
24DSN (related)
TO:0000177
It is expected that the herbicide application must not affect the agronomic yield, if any.
2,4-dichlorophenoxyacetic acid sensitivity
An assay to determine the tolerance exhibited by a plant or a group of plants (population) towards the applied herbicide 2,4-dichlorophenoxyacetic acid (2,4 D).
Gramene:pankaj_jaiswal
Plant sensitivity to soils with acidic conditions (pH<7).
plant_trait_ontology
TO:0000178
acid soil sensitivity
Plant sensitivity to soils with acidic conditions (pH<7).
Gramene:pankaj_jaiswal
TO:moorel
Response by the plant in terms of resistivity or sensitivity to biotic stress.
plant_trait_ontology
TO:0000179
biotic stress trait
Response by the plant in terms of resistivity or sensitivity to biotic stress.
Gramene:pankaj_jaiswal
A spikelet morphology trait (TO:0000657) which is the fertility to a spikelet (PO:0009051).
plant_trait_ontology
SPKFRT (related)
SpFert (related)
percent sterility (related)
seed setting (related)
TO:0000180
Determined by percent of spikelets with grains identified by pressing the spikelets with the fingers and counting those that have no grains or the percent seed setting.
Refer to fertility (PATO:0000274): A reproductive quality inhering in a bearer by virtue of the bearer's initiating, sustaining, or supporting reproduction.
spikelet fertility
A spikelet morphology trait (TO:0000657) which is the fertility to a spikelet (PO:0009051).
Gramene:pankaj_jaiswal
IRRI:SES
PO:0009051
TO:moorel
A seed morphology trait (TO:0000184) which is the weight of a seed (PO:0009010).
TO_GIT:196
SDWT (exact)
plant_trait_ontology
TO:0000181
Seed weight is a component of seed yield (TO:0000905) and seed quality (TO:0000162). Refer to weight (PATO:0000128): A physical quality inhering in a bearer that has mass near a gravitational body.
seed weight
A seed morphology trait (TO:0000184) which is the weight of a seed (PO:0009010).
Gramene:pankaj_jaiswal
PO:0009010
TO:moorel
The tolerance exhibited by a plant or a group of plants (population) towards the applied insecticide.
plant_trait_ontology
insecticide tolerance (related)
TO:0000182
insecticide sensitivity
The tolerance exhibited by a plant or a group of plants (population) towards the applied insecticide.
TO:moorel
The trait instances, which either cannot be assigned any of the eight top level parent terms such as biochemical, anatomy, development quality, stature/vigor, sterility/fertility, stress and the yield or are yet to be assigned a parent.
plant_trait_ontology
TO:0000183
other miscellaneous trait
The trait instances, which either cannot be assigned any of the eight top level parent terms such as biochemical, anatomy, development quality, stature/vigor, sterility/fertility, stress and the yield or are yet to be assigned a parent.
Gramene:pankaj_jaiswal
A multi-tissue plant structure morphology trait (TO:0000836) which is a quality of a seed (PO:0009010).
plant_trait_ontology
TO:0000184
seed morphology trait
A multi-tissue plant structure morphology trait (TO:0000836) which is a quality of a seed (PO:0009010).
Gramene:pankaj_jaiswal
PO:0009010
TO:moorel
Color of the stigma in a blossoming flower.
plant_trait_ontology
STICL (related)
SgC (related)
TO:0000185
stigma color
Color of the stigma in a blossoming flower.
Gramene:pankaj_jaiswal
IRRI:SES
OBSOLETE.
plant_trait_ontology
TO:0000186
OBSOLETE environmental stress related trait
true
An anther morphology trait (TO:1000022) which is the color (PATO:0000014) of an anther (PO:0009066)
TO_GIT:385
plant_trait_ontology
ANTCL (related)
TO:0000187
anther color
true
true
true
An anther morphology trait (TO:1000022) which is the color (PATO:0000014) of an anther (PO:0009066)
TO:austin_meier
Drought sensitivity is highly interactive with crop phenology, plant growth prior to stress, and timing, duration, and intensity of drought stress. For many soils, it takes at least 2 rainless weeks to cause marked differences in drought sensitivity during the vegetative stage and at least 7 rainless days during the reproductive stage to cause severe drought injury. Leaf rolling precedes leaf drying during drought. Repeated ratings are recommended through progress of the drought.
plant_trait_ontology
DRS (related)
DRSN (related)
drought susceptibility (related)
TO:0000188
drought sensitivity
Drought sensitivity is highly interactive with crop phenology, plant growth prior to stress, and timing, duration, and intensity of drought stress. For many soils, it takes at least 2 rainless weeks to cause marked differences in drought sensitivity during the vegetative stage and at least 7 rainless days during the reproductive stage to cause severe drought injury. Leaf rolling precedes leaf drying during drought. Repeated ratings are recommended through progress of the drought.
IRRI:SES
An embryo morphology trait (TO:0000064) which is the absence of embryo in the developing seed.
plant_trait_ontology
germless (related)
TO:0000189
embryoless
An embryo morphology trait (TO:0000064) which is the absence of embryo in the developing seed.
Gramene:pankaj_jaiswal
TO:moorel
A seed coat morphology trait (TO:0000838) which is the color of the seed coat (PO:0009088).
PATO:0000014
plant_trait_ontology
SCC (related)
SDCCL (related)
bran color (related)
TO:0000190
Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts.
seed coat color
A seed coat morphology trait (TO:0000838) which is the color of the seed coat (PO:0009088).
Gramene:pankaj_jaiswal
IRRI:SES
PO:0009088
TO:moorel
Causal agent: Dicladispa armigera.
plant_trait_ontology
HISPRS (related)
TO:0000191
rice hispa resistance
Causal agent: Dicladispa armigera.
Gramene:pankaj_jaiswal
Causal agent: Cnaphalocrocis medinalis.
plant_trait_ontology
LFRRS (related)
TO:0000192
leaf-roller resistance
Causal agent: Cnaphalocrocis medinalis.
Gramene:pankaj_jaiswal
An embryo morphology trait (TO:0000064) which is the shape of a plant embryo (PO:0009009).
PATO:0000052
plant_trait_ontology
TO:0000193
Refer to shape PATO:0000052:A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
embryo shape
An embryo morphology trait (TO:0000064) which is the shape of a plant embryo (PO:0009009).
PO:0009009
TO:moorel
An embryo shape trait (TO:0000193) which is a globular plant embryo (PO:0009009).
PATO:0001499
plant_trait_ontology
TO:0000194
Refer to globular (PATO:0001499): A spheroid quality inhering in a bearer by virtue of the bearer's resembling a ball (a sphere whose equatorial diameter is equal to the polar diameter).
globular embryo
An embryo shape trait (TO:0000193) which is a globular plant embryo (PO:0009009).
PO:0009009
TO:moorel
A plant embryo morphology trait (TO:0000064) which is an embryo of the germinating seed not producing a shoot.
plant_trait_ontology
SHMIN (related)
TO:0000195
shootless embryo
A plant embryo morphology trait (TO:0000064) which is an embryo of the germinating seed not producing a shoot.
Gramene:pankaj_jaiswal
TO:moorel
A polysaccharide content trait (TO:0006007) which is the amount of amylose (CHEBI:28102) in a plant structure (PO:0009011).
CHEBI:28102
plant_trait_ontology
AMYCN (related)
Amy (related)
TO:0000196
Amylose is a helical polymer made of α-D-glucose units, bound to each other through α(1→4) glycosidic bonds. This polysaccharide is one of the two components of starch, making up approximately 20-30% of the structure. The other component is amylopectin, which makes up 70–80% of the structure. (REF: Wikipedia)
amylose content
A polysaccharide content trait (TO:0006007) which is the amount of amylose (CHEBI:28102) in a plant structure (PO:0009011).
IRRI:SES
ISBN:198506732
A ligule morphology trait (TO:0002748) which is the color of a ligule (PO:0020105).
PATO:0000014
plant_trait_ontology
LIGCL (related)
LgC (related)
TO:0000197
Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts.
ligule color
A ligule morphology trait (TO:0002748) which is the color of a ligule (PO:0020105).
Gramene:pankaj_jaiswal
IRRI:SES
PO:0020105
TO:cooperl
Absence of roots in the seedling or plant.
plant_trait_ontology
RTMIN (related)
TO:0000198
rootless
Absence of roots in the seedling or plant.
Gramene:pankaj_jaiswal
plant_trait_ontology
GMS (related)
TO:0000199
genic male sterility
A stem strength (TO:0000051) trait which a measure of the fragility of a grass stem (culm; PO:0009047).
plant_trait_ontology
TO:0000200
brittle culm
A stem strength (TO:0000051) trait which a measure of the fragility of a grass stem (culm; PO:0009047).
Gramene:pankaj_jaiswal
TO:cooperl
A panicle inflorescence morphology trait (TO:0000847) which is the variation in color of the panicle inflorescence (PO:0030123).
PATO:0000014
plant_trait_ontology
PNCL (related)
TO:0000201
Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts.
panicle inflorescence color
A panicle inflorescence morphology trait (TO:0000847) which is the variation in color of the panicle inflorescence (PO:0030123).
Gramene:pankaj_jaiswal
Ratio of germinated to non-germinated seeds.
plant_trait_ontology
GERMRO (related)
TO:0000202
germination ratio
Ratio of germinated to non-germinated seeds.
Gramene:pankaj_jaiswal
Causal agent: Xanthomonas oryzae pv. oryzicola.
plant_trait_ontology
BLS (related)
BLSRS (related)
TO:0000203
Symptoms: linear lesions with small bacterial exudates evident. This scale may also be used for leaf smut caused by Entyloma oryzae.
rice bacterial leaf streak disease resistance
Causal agent: Xanthomonas oryzae pv. oryzicola.
Gramene:pankaj_jaiswal
IRRI:SES
A rice bacterial blight disease resistance (TO:0000175) that is involved in the response to rice bacterial blight disease, on a seedling. Causal agent: Xanthomonas oryzae pv. oryzae. Causal agent: Xanthomonas oryzae pv. oryzae.
plant_trait_ontology
SDLBTRS (related)
kresek (related)
leaf blight (related)
TO:0000204
Symptoms: lesions usually start near the leaf tips or leaf margins or both, and extend down the outer edge(s). Young lesions are pale to grayish green, later turning yellow to grey (dead) with time. In very susceptible varieties, lesions may extend to the entire leaf length into the leaf sheath. Kresek or seedling blight causes wilting and death of plant.
rice seedling blight disease resistance
A rice bacterial blight disease resistance (TO:0000175) that is involved in the response to rice bacterial blight disease, on a seedling. Causal agent: Xanthomonas oryzae pv. oryzae. Causal agent: Xanthomonas oryzae pv. oryzae.
Gramene:pankaj_jaiswal
IRRI:SES
Causal agent: Sagotella furcifera. Symptoms: partial to pronounced yellowing and increasing severity of stunting. Extreme signs are wilting and death of plants. Infested areas in the field may be patchy. (similar to the symptoms of whitebacked planthopper).
plant_trait_ontology
WBPH (related)
WBPHRS (related)
TO:0000205
white-backed planthopper resistance
Causal agent: Sagotella furcifera. Symptoms: partial to pronounced yellowing and increasing severity of stunting. Extreme signs are wilting and death of plants. Infested areas in the field may be patchy. (similar to the symptoms of whitebacked planthopper).
Gramene:pankaj_jaiswal
IRRI:SES
A leaf attitude (TO:0000206) which is the angle of a leaf (PO:0025034) measured against the stem.
jaiswalp
PATO:0000602
plant_trait_ontology
LBP (related)
LFAG (related)
TO:0000206
In rice, it is measured against the culm on the leaf below the flag leaf. Refer to angle value (PATO:0000602).
leaf angle
A leaf attitude (TO:0000206) which is the angle of a leaf (PO:0025034) measured against the stem.
IRRI:SES
TO:cooperl
A whole plant morphology trait (TO:0000398) which is the height of a whole plant (PO:0000003).
PATO:0000119
TO_GIT:367
TO_GIT:84
plant_trait_ontology
Ht (related)
PTHT (related)
shoot height (related)
TO:0000207
Comment: Refers to: height (PATO_0000119): A 1-D extent quality inhering in a bearer by virtue of the bearer's vertical dimension of extension.
plant height
A whole plant morphology trait (TO:0000398) which is the height of a whole plant (PO:0000003).
IRRI:SES
PO:0000003
TO:cooperl
A spikelet floret morphology trait (TO:0000274) which is the number of lemma (PO:0009037) in a spikelet floret (PO:0009082).
plant_trait_ontology
TO:0000208
lemma number
true
A spikelet floret morphology trait (TO:0000274) which is the number of lemma (PO:0009037) in a spikelet floret (PO:0009082).
Gramene:pankaj_jaiswal
PATO:0001555
PO:0009037
PO:0009082
TO:cooperl
TO:moorel
A spikelet floret morphology trait (TO:0000274) which is the number of palea (PO:0009038) in a spikelet floret (PO:0009082).
plant_trait_ontology
PALNB (related)
TO:0000209
palea number
true
A spikelet floret morphology trait (TO:0000274) which is the number of palea (PO:0009038) in a spikelet floret (PO:0009082).
Gramene:pankaj_jaiswal
PATO:0001555
PO:0009038
PO:0009082
TO:cooperl
TO:moorel
A stamen morphology trait (TO:0000215) which is the number of anthers (PO:0009066) in a stamen (PO:0009029).
TO_GIT:387
plant_trait_ontology
ANTNB (related)
TO:0000210
anther number
true
A stamen morphology trait (TO:0000215) which is the number of anthers (PO:0009066) in a stamen (PO:0009029).
Gramene:pankaj_jaiswal
TO:cooperl
Scored by gel consistency type in mm.
plant_trait_ontology
GELCON (related)
GelC (related)
TO:0000211
gel consistency
Scored by gel consistency type in mm.
IRRI:SES
Causal agent: Nephotettix spp. (Nephotettix virescens and Nephotettix cincticeps). It is the major vector for transmitting the tungro virus disease. Symptoms: Partial to pronounced yellowing and increasing severity of stunting. Extreme signs are wilting to death of plants. Infected areas in the field may be patchy.
plant_trait_ontology
GLFHRS (related)
GLH (related)
TO:0000212
green leafhopper resistance
Causal agent: Nephotettix spp. (Nephotettix virescens and Nephotettix cincticeps). It is the major vector for transmitting the tungro virus disease. Symptoms: Partial to pronounced yellowing and increasing severity of stunting. Extreme signs are wilting to death of plants. Infected areas in the field may be patchy.
Gramene:pankaj_jaiswal
IRRI:SES
Causal agent: rice grassy stunt virus 1 (RGSV1) and rice grassy stunt virus 2 (RGSV2). Symptoms: RGSV1 causes severe stunting, excessive tillering, pale green to yellow and narrow leaves with small rusty spots. RGSV2 causes severe stunting, excessive tillering, yellow to orange and narrow leaves with small rusty spots.
plant_trait_ontology
RGSVRS (related)
TO:0000213
rice grassy stunt 1 and 2 virus resistance
Causal agent: rice grassy stunt virus 1 (RGSV1) and rice grassy stunt virus 2 (RGSV2). Symptoms: RGSV1 causes severe stunting, excessive tillering, pale green to yellow and narrow leaves with small rusty spots. RGSV2 causes severe stunting, excessive tillering, yellow to orange and narrow leaves with small rusty spots.
Gramene:pankaj_jaiswal
IRRI:SES
An anther morphology trait (TO:1000022) which is the shape (PATO:0000052) of an anther (PO:0009066).
TO_GIT:385
plant_trait_ontology
ANTSHP (related)
TO:0000214
Refers to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
anther shape
true
true
true
An anther morphology trait (TO:1000022) which is the shape (PATO:0000052) of an anther (PO:0009066).
TO:ethan_johnson
A microsporophyll morphology trait (TO:0000868) which is a quality of a stamen (PO:0009029).
plant_trait_ontology
stamen related trait (related)
TO:0000215
stamen morphology trait
A microsporophyll morphology trait (TO:0000868) which is a quality of a stamen (PO:0009029).
Gramene:pankaj_jaiswal
PO:0009029
TO:moorel
OBSOLETE.
plant_trait_ontology
TO:0000216
OBSOLETE grassy stunt virus disease
true
Male sterility affected by both temperature and photoperiod.
plant_trait_ontology
TPGMS (related)
thermo-photoperiod sensitive genic male sterility (related)
TO:0000217
genic male sterility-thermo-photoperiod sensitive
Male sterility affected by both temperature and photoperiod.
Gramene:pankaj_jaiswal
IRRI:SES
Observations are made on staining behavior and number of nuclei in most of the pollen.
plant_trait_ontology
abortion pattern (related)
abortion pattern of male sterile lines (related)
TO:0000218
pollen abortion type
Observations are made on staining behavior and number of nuclei in most of the pollen.
Gramene:pankaj_jaiswal
IRRI:SES
OBSOLETE.
plant_trait_ontology
culm morphology (related)
TO:0000219
OBSOLETE stem morphology
true
Causal agent: Leptocorisa oratorius. Monitored at growth stage 7-9, resistance is a measure of damaged grains per panicle.
plant_trait_ontology
BUGRS (related)
RB (related)
TO:0000220
rice bug resistance
Causal agent: Leptocorisa oratorius. Monitored at growth stage 7-9, resistance is a measure of damaged grains per panicle.
Gramene:pankaj_jaiswal
IRRI:SES
A glume morphology trait (TO:0000869) which is the color of a glume (PO:0009039).
PATO:0000014
plant_trait_ontology
GLCL (related)
glume discoloration (related)
glume pigmentation (related)
pigmentation of glume (related)
TO:0000221
Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts.
glume color
A glume morphology trait (TO:0000869) which is the color of a glume (PO:0009039).
Gramene:pankaj_jaiswal
PO:0009039
TO:moorel
A grain yield trait (TO:0000396) which is the amount of whole (3/4 of original length or longer) milled kernels separated from the total amount of milled rice.
TO_GIT:422
plant_trait_ontology
HEADR (related)
head milled rice (related)
head rice ratio (related)
TO:0000222
Depending on the grain type, whole milled kernels are spearated using special sized screens. The weight of whole milled kernels or head rice is expressed as a percentage of the original rough rice sample.
head rice yield
A grain yield trait (TO:0000396) which is the amount of whole (3/4 of original length or longer) milled kernels separated from the total amount of milled rice.
TO:cooperl
https://ricecap.hosted.uark.edu/glossary_ricecaplist.htm#H
A carpel morphology trait (TO:0006012) which is a quality of a pistil.
plant_trait_ontology
pistil related trait (related)
TO:0000223
pistil morphology trait
A carpel morphology trait (TO:0006012) which is a quality of a pistil.
Gramene:pankaj_jaiswal
TO:moorel
Sensitivity to the iron ion content in the growth medium. It is important for synthesis of chlorophyll and some enzyme activities.
plant_trait_ontology
FESN (related)
FeTox (related)
iron toxicity (related)
TO:0000224
iron sensitivity
Sensitivity to the iron ion content in the growth medium. It is important for synthesis of chlorophyll and some enzyme activities.
Gramene:pankaj_jaiswal
IRRI:SES
An androecium morphology trait (TO:0000215) which is the number of stamens (PO:0009029) present in an androecium (PO:0009061).
TO_GIT:386
plant_trait_ontology
STANB (related)
TO:0000225
stamen number
An androecium morphology trait (TO:0000215) which is the number of stamens (PO:0009029) present in an androecium (PO:0009061).
Gramene:pankaj_jaiswal
PO:0009029
PO:0009049
TO:austin_meier
TO:moorel
A measure of either the absence of auricle or the length of auricle being zero.
auricle absence (exact)
auricle absent (exact)
plant_trait_ontology
AUMIN (related)
TO:0000226
auricleless
A measure of either the absence of auricle or the length of auricle being zero.
Gramene:pankaj_jaiswal
A root morphology trait (TO:0000043) which is the length of a root (PO:0009005).
GIT_TO:365
PATO:0000122
plant_trait_ontology
MRD (related)
MRL (related)
RTLG (related)
maximum root depth (related)
maximum root length (related)
TO:0000227
refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points.
root length
A root morphology trait (TO:0000043) which is the length of a root (PO:0009005).
GR:pj
Gramene:jcl
TO:austin_meier
TO:cooperl
A plant quality trait (TO:0000597) which is the amount of moisture in a plant structure (PO:0009011).
plant_trait_ontology
TO:0000228
moisture content trait
A plant quality trait (TO:0000597) which is the amount of moisture in a plant structure (PO:0009011).
TO:cooperl
Sensitivity response on the plant development and the related growth stages by the duration of light, to which the plant has been exposed.
plant_trait_ontology
PPDSN (related)
TO:0000229
photoperiod sensitivity trait
Sensitivity response on the plant development and the related growth stages by the duration of light, to which the plant has been exposed.
Gramene:pankaj_jaiswal
Absence of crown roots in the plant.
plant_trait_ontology
CWRTMIN (related)
TO:0000230
crown rootless
Absence of crown roots in the plant.
Gramene:pankaj_jaiswal
An endosperm morphology trait (TO:0000575) which is the absence of endosperm (PO:0009089) in the seed (PO:0009010) or grain.
TO_GIT:133
plant_trait_ontology
ENDMIN (related)
TO:0000231
This is also an endosperm quality trait (TO:0000587).
endospermless
An endosperm morphology trait (TO:0000575) which is the absence of endosperm (PO:0009089) in the seed (PO:0009010) or grain.
Gramene:pankaj_jaiswal
PO:0009010
PO:0009089
TO:moorel
Caused by the interaction of cytoplasmic (mitochondrial) and nuclear genomes. The trait shows non-mendelian inheritance or maternal inheritance.
cytoplasmic male sterility (sensu Oryza) (exact)
plant_trait_ontology
CMS (related)
TO:0000232
rice cytoplasmic male sterility
Caused by the interaction of cytoplasmic (mitochondrial) and nuclear genomes. The trait shows non-mendelian inheritance or maternal inheritance.
Gramene:pankaj_jaiswal
IRRI:SES
A root morphology trait (TO:0000043) which is the volume of a root (PO:0009005).
plant_trait_ontology
RTVOL (related)
TO:0000233
Root volume is an indirect measure of root mass or density and can be quantified by water displacement method, in cubic centimeters.
root volume
A root morphology trait (TO:0000043) which is the volume of a root (PO:0009005).
GR_REF:6917
Gramene:pankaj_jaiswal
The embryo of the germinating seed does not produce roots.
plant_trait_ontology
TO:0000234
radicleless
The embryo of the germinating seed does not produce roots.
Gramene:pankaj_jaiswal
A ligule morphology trait (TO:0002748) which is the absence of a ligule (PO:0020105).
PATO:0000462
plant_trait_ontology
LIGMIN (related)
TO:0000235
Refer to absent (PATO:0000462): A quality denoting the lack of an entity.
liguleless
A ligule morphology trait (TO:0002748) which is the absence of a ligule (PO:0020105).
Gramene:pankaj_jaiswal
PO:0020105
TO:cooperl
crop damage resistance trait (exact)
plant_trait_ontology
TO:0000236
crop damage resistance
Response by the plant in terms of sensitivity to water stress (quality and quantity of water).
plant_trait_ontology
TO:0000237
water stress trait
Response by the plant in terms of sensitivity to water stress (quality and quantity of water).
Gramene:pankaj_jaiswal
A chemical stress sensitivity (TO:0000238) which is the response by the plant to a specific growth medium.
plant_trait_ontology
edaphic (related)
TO:0000238
growth media composition sensitivity
A chemical stress sensitivity (TO:0000238) which is the response by the plant to a specific growth medium.
TO:moorel
OBSOLETE.
plant_trait_ontology
TO:0000239
OBSOLETE plant genetic trait unknown
true
A lemma morphology trait (TO:1000023) which is the length of a sterile lemma (PO:0009040).
TO_GIT:390
plant_trait_ontology
SLmL (related)
STLEMLG (related)
TO:0000240
Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points.
sterile lemma length
A lemma morphology trait (TO:1000023) which is the length of a sterile lemma (PO:0009040).
IRRI:SES
PATO:0000122
PO:0009040
TO:cooperl
TO:moorel
A shoot system morphology trait (TO:0000077) which is the number of leaves (PO:0025034) in a shoot system (PO:0009006) of a plant.
plant_trait_ontology
LFNB (related)
TO:0000241
leaf number
A shoot system morphology trait (TO:0000077) which is the number of leaves (PO:0025034) in a shoot system (PO:0009006) of a plant.
Gramene:pankaj_jaiswal
TO:cooperl
Response by the plant in terms of resistivity or sensitivity to microbes.
plant_trait_ontology
TO:0000242
microbial damage resistance
Response by the plant in terms of resistivity or sensitivity to microbes.
Gramene:pankaj_jaiswal
Measured as number of calli capable of differentiating into roots and(or) shoots under in vitro tissue culture condition.
plant_trait_ontology
INVRAB (related)
TO:0000243
in vitro regeneration ability
Measured as number of calli capable of differentiating into roots and(or) shoots under in vitro tissue culture condition.
Gramene:pankaj_jaiswal
A coleoptile morphology trait (TO:0000753) which is the the color of a coleoptile (PO:0020033).
PATO:0000014
TO_GIT:62
plant_trait_ontology
COLCL (related)
TO:0000244
coleoptile color
A coleoptile morphology trait (TO:0000753) which is the the color of a coleoptile (PO:0020033).
Gramene:pankaj_jaiswal
PO:0020033
TO:cooperl
No pollen development.
plant_trait_ontology
TO:0000245
An example is rice TGMS line Norin PL12.
pollen free
No pollen development.
Gramene:pankaj_jaiswal
IRRI:SES
Causal agent: Sogatodes oryzicola (Tagosodes orizicolus). Symptoms: partial to pronounced yellowing and increasing severity of stunting. Extreme signs are wilting and death of plants. Infested areas in the field may be patchy. (similar to the symptoms of whitebacked planthopper).
plant_trait_ontology
DELRS (related)
RDel (related)
TO:0000246
The evaluation scales are based on symptoms. Incidence of dead plants could be considered for final evaluation.
rice delphacid resistance
Causal agent: Sogatodes oryzicola (Tagosodes orizicolus). Symptoms: partial to pronounced yellowing and increasing severity of stunting. Extreme signs are wilting and death of plants. Infested areas in the field may be patchy. (similar to the symptoms of whitebacked planthopper).
Gramene:pankaj_jaiswal
IRRI:SES
plant_trait_ontology
TO:0000247
other nutrient sensitivity
A macronutrient sensitivity (TO:0000176) response shown by the plant either grown in an excess or deficient amount of the primary macronutrient in the growth medium.
plant_trait_ontology
TO:0000248
primary macronutrient sensitivity
A macronutrient sensitivity (TO:0000176) response shown by the plant either grown in an excess or deficient amount of the primary macronutrient in the growth medium.
TO:moorel
A measure of aging of leaf.
plant_trait_ontology
Foilar senescence (related)
LFSNS (related)
Sen (related)
TO:0000249
Rapid senescence of leaves can be detrimental to yield. Can be measured by loss of normal leaf color. In triticeae it is often measured on the flag or the second from top leaf.
leaf senescence trait
A measure of aging of leaf.
IRRI:SES
A plant trait (TO:0000387) which is a measure of the active and/or healthy growth and development of a plant stucture (PO:0009011) or a population of plants.
TO_GIT:xyz
plant vigour trait (exact)
plant_trait_ontology
TO:0000250
Plants vigor traits include those of a whole plant (PO:00009011; inclucluding a seedling), or parts of the plant such as a seed (PO:0009010), or of explants such as anthers (PO:0009066) or cuttings.
plant vigor trait
A plant trait (TO:0000387) which is a measure of the active and/or healthy growth and development of a plant stucture (PO:0009011) or a population of plants.
TO:cooperl
A macronutrient sensitivity (TO:0000176) response shown by the plant either grown in an excess or deficient amount of the secondary macronutrient in the growth medium.
plant_trait_ontology
TO:0000251
secondary macronutrient sensitivity
A macronutrient sensitivity (TO:0000176) response shown by the plant either grown in an excess or deficient amount of the secondary macronutrient in the growth medium.
TO:moorel
Sensitivity response shown by the plant grown in either the excess or deficient amount of the non-mineral nutrients in the growth medium. These nutrients are found in the air and water.
plant_trait_ontology
TO:0000252
non-mineral nutrient sensitivity
Sensitivity response shown by the plant grown in either the excess or deficient amount of the non-mineral nutrients in the growth medium. These nutrients are found in the air and water.
Gramene:pankaj_jaiswal
plant_trait_ontology
SDDOR (related)
TO:0000253
seed dormancy
A growth media composition sensitivity (TO:0000238) which is the response of the plant to the pH of the growth media (soil/culture media), whether it be acidic or alkaline.
plant_trait_ontology
soil pH stress (related)
TO:0000254
growth media pH sensitivity
A growth media composition sensitivity (TO:0000238) which is the response of the plant to the pH of the growth media (soil/culture media), whether it be acidic or alkaline.
Gramene:pankaj_jaiswal
TO:moorel
Causal agent: Rhizoctonia solani. Symptom: Grayish-green lesions may enlarge and coalesce with other lesions, mostly on lower leaf sheaths, but occasionally on the leaves.
TO_GIT:67
plant_trait_ontology
SHBTRS (related)
ShB (related)
TO:0000255
sheath blight disease resistance
Causal agent: Rhizoctonia solani. Symptom: Grayish-green lesions may enlarge and coalesce with other lesions, mostly on lower leaf sheaths, but occasionally on the leaves.
IRRI:SES
OBSOLETE. A genetic trait is a distinguishable feature or a characteristic or a quality of character or a phenotypic feature of a developing or developed individual that is linked to a physical or genetic marker
plant_trait_ontology
TO:0000256
OBSOLETE genetic trait
true
OBSOLETE. A genetic trait is a distinguishable feature or a characteristic or a quality of character or a phenotypic feature of a developing or developed individual that is linked to a physical or genetic marker
Gramene:pankaj_jaiswal
The extent of the root branching as determined under variable treatments and environments.
plant_trait_ontology
RTBR (related)
rbr (related)
TO:0000257
root branching
The extent of the root branching as determined under variable treatments and environments.
Gramene:pankaj_jaiswal
A leaf morphology trait (TO:0000748) which is the thickness of a leaf (PO:0025034).
PATO:0000915
plant_trait_ontology
TO:0000258
Refers to thickness PATO:0000915 A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
leaf thickness
A leaf morphology trait (TO:0000748) which is the thickness of a leaf (PO:0025034).
PO:0025034
TO:moorel
Tolerance to warm temperatures if plant is exposed to above than permissive temperature limits. Observe differences in vigor along with subtle changes in leaf color. The optimum time to make observations would be the seedling, tillering (sensu Poaceae), flowering and mature stages. Mainly scored in terms of spikelet fertility in grasses.
plant_trait_ontology
HTol (related)
TO:0000259
heat tolerance
Tolerance to warm temperatures if plant is exposed to above than permissive temperature limits. Observe differences in vigor along with subtle changes in leaf color. The optimum time to make observations would be the seedling, tillering (sensu Poaceae), flowering and mature stages. Mainly scored in terms of spikelet fertility in grasses.
Gramene:pankaj_jaiswal
IRRI:SES
Since there is no genetic resistance to birds, the damage can be quantified as it does represent resistance. Factors as flag leaf angle or panicle exsertion are important.
plant_trait_ontology
BD (related)
TO:0000260
bird damage resistance
Since there is no genetic resistance to birds, the damage can be quantified as it does represent resistance. Factors as flag leaf angle or panicle exsertion are important.
Gramene:pankaj_jaiswal
IRRI:SES
An assay to determine the resistance exhibited by a plant or a group of plants (population) in response to insect infestation as compared to the susceptible and/or the reference plants of the same species.
jaiswalp
insect resistance (narrow)
plant_trait_ontology
TO:0000261
It represents the damage done by the insects to the plant. The damage is a direct measure of resistance to the particular insect variety. The test evaluation is valid if insect population is uniformly distributed at a high level across the screening box or the field.
insect damage resistance
An assay to determine the resistance exhibited by a plant or a group of plants (population) in response to insect infestation as compared to the susceptible and/or the reference plants of the same species.
Gramene:pankaj_jaiswal
IRRI:SES
A panicle inflorescence morphology trait (TO:0000847) which is the shape of a panicle inflorescence (PO:0030123).
PATO:0000052
plant_trait_ontology
TO:0000262
Refer to shape PATO:0000052:A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
panicle inflorescence shape
A panicle inflorescence morphology trait (TO:0000847) which is the shape of a panicle inflorescence (PO:0030123).
Gramene:pankaj_jaiswal
true
A lemma and palea morphology trait (TO:0000079) which is the color of the lemma (PO:0009037) and the palea (PO:0009038).
PATO:0000014
plant_trait_ontology
LEMCL (related)
LEMPALCL (related)
Lemma color (related)
LmPC (related)
PALCL (related)
palea color (related)
TO:0000264
Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts.
lemma and palea color
A lemma and palea morphology trait (TO:0000079) which is the color of the lemma (PO:0009037) and the palea (PO:0009038).
Gramene:pankaj_jaiswal
IRRI:SES
PO:0009037
PO:0009038
TO:moorel
Response shown by the plant in the presence of a light quality stress.
plant_trait_ontology
response to light quality (related)
TO:0000265
Light quality is defined by the wavelength of the light type.
light quality sensitivity
Response shown by the plant in the presence of a light quality stress.
Gramene:pankaj_jaiswal
An endosperm morphology trait (TO:0000575) which is the chalkiness of an endosperm (PO:0009089) on the scale of (a) white belly, (b) white center or (c) white back.
TO_GIT:133
plant_trait_ontology
CHALK (related)
Clk (related)
chalkiness of endosperm (related)
TO:0000266
This is also an endosperm quality trait (TO:0000587).
chalky endosperm
An endosperm morphology trait (TO:0000575) which is the chalkiness of an endosperm (PO:0009089) on the scale of (a) white belly, (b) white center or (c) white back.
Gramene:pankaj_jaiswal
IRRI:SES
TO:moorel
An inflorescence morphology trait (TO:0000373) which is the variation in the type of inflorescence, whether due to extent and number of branching, branch angles or modified form of the inflorescence (PO:0009049).
TO:0000500
INFLOTYPE (exact)
plant_trait_ontology
inflorescence type (related)
TO:0000267
inflorescence type
An inflorescence morphology trait (TO:0000373) which is the variation in the type of inflorescence, whether due to extent and number of branching, branch angles or modified form of the inflorescence (PO:0009049).
Gramene:pankaj_jaiswal
PO:0009049
TO:moorel
An inflorescence morphology trait (TO:0000373) which is the shape of an inflorescence (PO:0009049).
PATO:0000052
TO_GIT:92
TO_GIT:97
head shape (narrow)
plant_trait_ontology
TO:0000268
Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
inflorescence shape
An inflorescence morphology trait (TO:0000373) which is the shape of an inflorescence (PO:0009049).
Gramene:pankaj_jaiswal
PO:0009049
TO:cooperl
A grain weight (TO:0000919) which is the weight of a sample of 100 grains (caryopsis fruit; PO:0030104), with the caryopsis hull (PO:0006000).
TO:0000518
100-grain weight (exact)
HGRWT (exact)
hundred grain weight (exact)
plant_trait_ontology
HSDWT (related)
hundred seed weight (related)
TO:0000269
Hundred grain weights are measured in grams, on a precision balance on 100 well-developed whole grains (with the caryopsis hull; PO:0006000), dried to 13% moisture content.
100-grain weight
A grain weight (TO:0000919) which is the weight of a sample of 100 grains (caryopsis fruit; PO:0030104), with the caryopsis hull (PO:0006000).
Gramene:pankaj_jaiswal
IRRI:SES
TO:cooperl
An inflorescence axis morphology trait (TO:0000782) which is the angle of an inflorescence axis (PO:0020122).
PATO:0002326
plant_trait_ontology
TO:0000270
Refers to the angle ((PATO:0002326): An orientation inhering in a bearer by virtue of the bearer's placement at an angle) of an inflorescence axis (PO:0020122).
inflorescence axis angle
An inflorescence axis morphology trait (TO:0000782) which is the angle of an inflorescence axis (PO:0020122).
Gramene:pankaj_jaiswal
PO:0020122
TO:cooperl
An inflorescence morphology trait (TO:0000373) trait which is the length of an inflorescence (PO:0009049).
plant_trait_ontology
TO:0000271
inflorescence length
An inflorescence morphology trait (TO:0000373) trait which is the length of an inflorescence (PO:0009049).
TO:cooperl
OBSOLETE.
plant_trait_ontology
TO:0000272
OBSOLETE plant survivability
true
Causal agent: Pseudaletia unipuncta, Spodoptera mauritia and Spodoptera praefica. The swarming caterpillars cause severe damage to rice plants in nursery beds.
plant_trait_ontology
AWRRS (related)
TO:0000273
The worms appear suddenly in masses and move like an army from field to field so that seedbeds or the direct seeded fields look as if grazed by cattles. Generally, a transplanted crop is not severely affected. Damage by armyworms is most serious during periods of stem elongation and grain formation. Larvae defoliate plants, typically by chewing angular pieces off leaves. They may also feed on the panicle near the developing kernels causing these kernels to dry before filling. This feeding causes all or parts of the panicle to turn white. If the entire panicle is white, the damage may also be due to stem rot or feeding by rats. The seriousness of armyworm injury depends on the maturity of the plant and the amount of tissue consumed. Significant yield reduction can occur if defoliation is greater than 25% at 2 to 3 weeks before heading. They migrate from field to field and extensive losses are often caused within a week. Their migration is facilitated by the absence of standing water in the field.
armyworm resistance
Causal agent: Pseudaletia unipuncta, Spodoptera mauritia and Spodoptera praefica. The swarming caterpillars cause severe damage to rice plants in nursery beds.
Gramene:pankaj_jaiswal
http://pne.gsnu.ac.kr/riceipm/spodopte.htm
http://www.ipm.ucdavis.edu/PMG/r682300411.html
A flower morphology trait (TO:0000499) which is a quality of a spikelet floret (PO:0009082).
TO_GIT:105
plant_trait_ontology
floret related trait (related)
TO:0000274
spikelet floret morphology trait
A flower morphology trait (TO:0000499) which is a quality of a spikelet floret (PO:0009082).
Gramene:pankaj_jaiswal
TO:cooperl
TO:moorel
A collective phyllome structure morphology trait (TO:0000845) which is a quality of a perianth (PO:0009058).
TO_GIT:105
TO_GIT:306
plant_trait_ontology
perianth related trait (related)
TO:0000275
perianth morphology trait
A collective phyllome structure morphology trait (TO:0000845) which is a quality of a perianth (PO:0009058).
Gramene:pankaj_jaiswal
PO:0009058
TO:cooperl
TO:moorel
Becoming tolerant to drought like conditions of minimal or no water content in the growth environment.
drought resistance (exact)
plant_trait_ontology
DRTL (related)
TO:0000276
Often the plants exhibiting high salt tolerance also exhibit drought tolerance.
drought tolerance
Becoming tolerant to drought like conditions of minimal or no water content in the growth environment.
Gramene:pankaj_jaiswal
A plant trait (TO:0000387) which is a quality of a chemical entity (CHEBI:24431), a plant metabolite (CHEBI:76924), or a molecular function (GO:0003674), which occurs in a cellular component (GO:0005575), plant anatomical entity (PO:0025131) or during a plant structure development stage (PO:0009012).
plant_trait_ontology
TO:0000277
biochemical trait
A plant trait (TO:0000387) which is a quality of a chemical entity (CHEBI:24431), a plant metabolite (CHEBI:76924), or a molecular function (GO:0003674), which occurs in a cellular component (GO:0005575), plant anatomical entity (PO:0025131) or during a plant structure development stage (PO:0009012).
Gramene:pankaj_jaiswal
TO:cooperl
The ratio determined from the parameters evaluated for root length and the shoot length in a study.
RTSHRO (exact)
r/s ratio (exact)
root length to shoot length ratio (exact)
root/shoot ratio (exact)
plant_trait_ontology
TO:0000278
root to shoot ratio
The ratio determined from the parameters evaluated for root length and the shoot length in a study.
Gramene:pankaj_jaiswal
A root morphology trait (TO:0000043) which is the weight of a root (PO:0009005).
plant_trait_ontology
RTWT (related)
TRW (related)
total root weight (related)
TO:0000279
Root weight may be measured as the average dry or fresh weight of roots.
root weight
A root morphology trait (TO:0000043) which is the weight of a root (PO:0009005).
Gramene:pankaj_jaiswal
Represents the seedling growth of the plant.
plant_trait_ontology
SDLVIG (related)
Sd (related)
TO:0000280
seedling vigor
Represents the seedling growth of the plant.
IRRI:SES
The trait associated with an assay to determine the affected metabolite's profile.
plant_trait_ontology
TO:0000281
metabolite content trait
The trait associated with an assay to determine the affected metabolite's profile.
Gramene:pankaj_jaiswal
OBSOLETE: The trait associated with an assay to determine the effected enzymatic activity and protein content.
plant_trait_ontology
TO:0000282
OBSOLETE enzymatic activity and protein content related trait
true
OBSOLETE: The trait associated with an assay to determine the effected enzymatic activity and protein content.
Gramene:pankaj_jaiswal
A plant trait (TO:0000387) which is a process quality (PATO:0001236) of a biological process (GO:0008150) which occurs in a plant anatomical entity (PO:0025131), a cellular component (GO:0005575), or during a plant structure development stage (PO:0009012).
TO:0000349
TO_GIT:378
physiological process trait (exact)
plant_trait_ontology
TO:0000283
Refers to process quality (PATO:0001236): A quality which inheres in an process.
biological process trait
A plant trait (TO:0000387) which is a process quality (PATO:0001236) of a biological process (GO:0008150) which occurs in a plant anatomical entity (PO:0025131), a cellular component (GO:0005575), or during a plant structure development stage (PO:0009012).
GO:0008150
Gramene:pankaj_jaiswal
TO:cooperl
Catalysis of the reaction: ATP + alpha-D-glucose 1-phosphate = diphosphate + ADP-glucose.
plant_trait_ontology
ADP-glucose pyrophosphorylase (related)
ADP-glucose synthase (related)
ADP-glucose synthetase (related)
ADPG pyrophosphorylase (related)
AGPACT (related)
adenosine diphosphate glucose pyrophosphorylase (related)
adenosine diphosphoglucose pyrophosphorylase (related)
glucose 1-phosphate adenylyltransferase (related)
glucose-1-phosphate adenylyltransferase activity (related)
TO:0000284
ADP glucose pyrophosphorylase activity trait
Catalysis of the reaction: ATP + alpha-D-glucose 1-phosphate = diphosphate + ADP-glucose.
EC:2.7.7.27
GO:0008878
plant_trait_ontology
TO:0000285
nodal tillering
Measure of sensitivity of a plant if placed under submergence condition.
plant_trait_ontology
SUBSN (related)
Sub (related)
submergence tolerance (related)
TO:0000286
submergence sensitivity
Measure of sensitivity of a plant if placed under submergence condition.
IIRRI:SES
A grain shape (TO:0002730) of the brown rice. Measure after harvesting, cleaning, and dehulling.
PATO:0000052
plant_trait_ontology
BRWSHP (related)
BrS (related)
TO:0000287
Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
brown rice shape
A grain shape (TO:0002730) of the brown rice. Measure after harvesting, cleaning, and dehulling.
IRRI:SES
TO:moorel
An amylase activity trait (TO:0000703) which is the quality of the endohydrolysis of 1,4-a-D-glucosidic linkages in polysaccharides containing three or more 1,4-a-linked D-glucose units.
plant_trait_ontology
ALPHAAMYASEACT (related)
Amy (related)
alpha amylase (related)
endoamylase (related)
glycogenase (related)
taka-amylase A (related)
TO:0000288
alpha-amylase activity trait
An amylase activity trait (TO:0000703) which is the quality of the endohydrolysis of 1,4-a-D-glucosidic linkages in polysaccharides containing three or more 1,4-a-linked D-glucose units.
EC:3.2.1.1
GO:0004556
A carotenoid content trait (TO:0000496) which is the amount of carotene (CHEBI:23042) in a plant structure (PO:0009011).
CHEBI:23042
TO_GIT:24
plant_trait_ontology
TO:0000289
Carotenes are a group of naturally occurring tetraterpenes (carotenoids) that are synthesized only in plants, and unlike the xanthophylls, do not contain any oxygen.
carotene content
A carotenoid content trait (TO:0000496) which is the amount of carotene (CHEBI:23042) in a plant structure (PO:0009011).
Gramene:pankaj_jaiswal
ISBN:198506732
TO:cooperl
A phytochemical compound content trait (TO:0000674) which is the amount of flavonoid (CHEBI:47916) in a plant structure (PO:0009011).
CHEBI:47916
plant_trait_ontology
TO:0000290
Flavonoids are water soluble polyphenolic molecules containing 15 carbon atoms. Flavonoids belong to the polyphenol family and have antioxidant activity.
flavonoid content
A phytochemical compound content trait (TO:0000674) which is the amount of flavonoid (CHEBI:47916) in a plant structure (PO:0009011).
Gramene:pankaj_jaiswal
TO:cooperl
A metabolite content trait (TO:0000281) which is the amount of carbohydrate (CHEBI:16646) in a plant structure (PO:0009011).
CHEBI:16646
plant_trait_ontology
CARBCN (related)
TO:0000291
carbohydrate content
A metabolite content trait (TO:0000281) which is the amount of carbohydrate (CHEBI:16646) in a plant structure (PO:0009011).
Gramene:pankaj_jaiswal
TO:cooperl
Causal agent: Mycoplasma. Symptoms: pale yellow, droopy leaves, excessive tillering and stunting.
plant_trait_ontology
YD (related)
YDRS (related)
TO:0000292
yellow dwarf disease resistance
Causal agent: Mycoplasma. Symptoms: pale yellow, droopy leaves, excessive tillering and stunting.
Gramene:pankaj_jaiswal
IRRI:SES
A chlorophyll content trait (TO:0000495) which is the chlorophyll a content in a plant structure (PO:0009011).
Chl a (exact)
chl-a (exact)
chlorophyll-a content (exact)
plant_trait_ontology
TO:0000293
chlorophyll a content
A chlorophyll content trait (TO:0000495) which is the chlorophyll a content in a plant structure (PO:0009011).
Gramene:pankaj_jaiswal
TO:cooperl
A leaf sheath auricle morphology trait (TO:0002717) which is the color of a leaf sheath auricle (PO:0020106).
PATO:0000014
plant_trait_ontology
AC (related)
AUCL (related)
TO:0000294
Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts.
leaf sheath auricle color
A leaf sheath auricle morphology trait (TO:0002717) which is the color of a leaf sheath auricle (PO:0020106).
IRRI:SES
PO:0020106
TO:cooperl
A chlorophyll content trait (TO:0000495) which is the chlorophyll b content in a plant structure (PO:0009011).
chl b content (exact)
chl-b content (exact)
chlorophyll-b content (exact)
plant_trait_ontology
TO:0000295
chlorophyll b content
A chlorophyll content trait (TO:0000495) which is the chlorophyll b content in a plant structure (PO:0009011).
Gramene:pankaj_jaiswal
TO:cooperl
Represents the growth of plant. Used to evaluate genetic material under stress and non-stress conditions, several factors may interact, influencing the seedling vigor (e.g. tillering ability, plant height, etc).
plant_trait_ontology
VGVIG (related)
Vg (related)
vegetative growth vigor (related)
TO:0000296
vegetative vigor
Represents the growth of plant. Used to evaluate genetic material under stress and non-stress conditions, several factors may interact, influencing the seedling vigor (e.g. tillering ability, plant height, etc).
Gramene:pankaj_jaiswal
An oligosaccharide content (TO:0006003) which is the amount of glucosamine (CHEBI:5417) in a plant structure (PO:0009011).
CHEBI:5417
Gramene:pankaj_jaiswal
ISBN:198506732
plant_trait_ontology
2-amino-2-deoxyglucopyranose content (related)
GLUCNCN (related)
TO:0000297
It is one of the most abundant natural polysaccharide.
glucosamine content
A chlorophyll content trait (TO:0000495) which is the ratio of chlorophyll a to chlorophyll b in a plant structure (PO:0009011).
chl a to chl b ratio (exact)
chl-a to chl-b ratio (exact)
chlorophyll content ratio (exact)
plant_trait_ontology
CHLRO (related)
TO:0000298
The average ratio of chl a to chl b is about 3:1.
chlorophyll ratio
A chlorophyll content trait (TO:0000495) which is the ratio of chlorophyll a to chlorophyll b in a plant structure (PO:0009011).
ISBN:198506732
TO:cooperl
A leaf lamina morphology trait (TO:0000829) which is the color of the leaf lamina (PO:0020039).
PATO:0000014
plant_trait_ontology
LBC (related)
LFLCL (related)
leaf blade color (related)
leaf color (related)
TO:0000299
Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts.
leaf lamina color
A leaf lamina morphology trait (TO:0000829) which is the color of the leaf lamina (PO:0020039).
IRRI:SES
PO:0020039
TO:moorel
Amount of glucose present in the plant or plant part.
plant_trait_ontology
D-glucose content (related)
GLUCCN (related)
dextrose content (related)
TO:0000300
It is a common monosaccharide that is a component of oligo/disaccharides (sucrose, lactose, and maltose) and various complex carbohydrates.
glucose content
Amount of glucose present in the plant or plant part.
Gramene:pankaj_jaiswal
The xanthophyll content in a plant or plant part.
plant_trait_ontology
XANCN (related)
TO:0000301
These are any group of naturally occurring tetraterpenes (carotenoids) that are synthesized only in plants and contain oxygen in various forms.
xanthophyll content
The xanthophyll content in a plant or plant part.
ISBN:198506732
OBSOLETE.
plant_trait_ontology
TO:0000302
OBSOLETE smut disease
true
Tolerance to cold temperatures if plant is exposed to below permissive temperature limits. Observe differences in vigor along with subtle changes in leaf color. The optimum time to make observations would be the seedling, tillering (sensu Poaceae), flowering and mature stages.
plant_trait_ontology
COLDTL (related)
CTol (related)
TO:0000303
cold tolerance
Tolerance to cold temperatures if plant is exposed to below permissive temperature limits. Observe differences in vigor along with subtle changes in leaf color. The optimum time to make observations would be the seedling, tillering (sensu Poaceae), flowering and mature stages.
Gramene:pankaj_jaiswal
IRRI:SES
A seed morphology trait (TO:0000184) which is the thickness of a seed (PO:0009010).
PATO:0000915
TO_GIT:197
plant_trait_ontology
SDTH (related)
TO:0000304
Seed thickness is a component of seed size (TO:0000391) and has a component of seed quality (TO:0000162). Refer to (PATO:0000915): A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width.
seed thickness
A seed morphology trait (TO:0000184) which is the thickness of a seed (PO:0009010).
Gramene:pankaj_jaiswal
PO:0009010
TO:moorel
Catalysis of the reaction: ATP + L-glutamate + ammonia = ADP + phosphate + L-glutamine.
plant_trait_ontology
GS1 (related)
GS1CN (related)
L-glutamine synthetase (related)
glutamate-ammonia ligase (related)
glutamylhydroxamic synthetase (related)
TO:0000305
glutamine synthetase content
Catalysis of the reaction: ATP + L-glutamate + ammonia = ADP + phosphate + L-glutamine.
EC:6.3.1.2
GO:0004356
A root morphology trait (TO:0000043) which is the thickness of a root (PO:0009005).
plant_trait_ontology
RTTH (related)
TO:0000306
Root thickness may be calculated as an average of several roots.
root thickness
A root morphology trait (TO:0000043) which is the thickness of a root (PO:0009005).
Gramene:jcl
Gramene:pankaj_jaiswal
TO:cooperl
Amount of hexose present in the plant or plant part.
plant_trait_ontology
HEXCN (related)
TO:0000307
Hexose is any aldose having a chain of six carbon atoms in a molecule.
hexose content
Amount of hexose present in the plant or plant part.
ISBN:198506732
Describes the extent of fertile pollen percentage. Also refers to male sterility-measure (extent of sterility).
plant_trait_ontology
MALERF (related)
male fertility restoration in F1 hybrids (related)
TO:0000308
male fertility restoration trait
Describes the extent of fertile pollen percentage. Also refers to male sterility-measure (extent of sterility).
Gramene:pankaj_jaiswal
IRRI:SES
true
Self-incompatibility allows plants to recognize and reject pollen from the same plant, thereby reducing inbreeding.
plant_trait_ontology
Genetic self-incompatibility (related)
TO:0000310
In most cases self-incompatibility is controlled by a single genetic locus, recent results show that complex signal transduction pathways and many players are involved in pollen recognition and rejection.
self-incompatibility
Self-incompatibility allows plants to recognize and reject pollen from the same plant, thereby reducing inbreeding.
PMID:10066554
Catalysis of the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides.
plant_trait_ontology
INVACT (related)
acid invertase (related)
alkaline invertase (related)
beta-D-fructofuranoside fructohydrolase (related)
beta-fructofuranosidase activity (related)
beta-fructosidase (related)
beta-h-fructosidase (related)
fructosylinvertase (related)
glucosucrase (related)
invertin (related)
maxinvert L 1000 (related)
saccharase (related)
sucrase (related)
TO:0000311
invertase activity trait
Catalysis of the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides.
EC:3.2.1.26
GO:0004564
Catalysis of the reaction: 2 L-glutamate + NAD+ = L-glutamine + 2-oxoglutarate + NADH + H+.
plant_trait_ontology
L-glutamate synthase (NADH) (related)
L-glutamate synthetase (related)
NADH-dependent glutamate synthase (related)
NADH-glutamate synthase (related)
NADHGOGATCN (related)
glutamate (reduced nicotinamide adenine dinucleotide) synthase (related)
glutamate synthase (NADH) activity (related)
glutamate synthase (NADH2) (related)
TO:0000312
NADH glutamate synthase content
Catalysis of the reaction: 2 L-glutamate + NAD+ = L-glutamine + 2-oxoglutarate + NADH + H+.
EC:1.4.1.14
GO:0016040
Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O.
plant_trait_ontology
P71CN (related)
TO:0000313
perodidase-71 content
Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O.
EC:1.11.1.7
GO:0004601
Catalysis of the reaction: 2-phospho-D-glycerate = 3-phospho-D-glycerate.
plant_trait_ontology
PGAM (related)
PGAMCN (related)
TO:0000314
phosphoglycerate mutase content
Catalysis of the reaction: 2-phospho-D-glycerate = 3-phospho-D-glycerate.
EC:5.4.2.1
GO:0004619
The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a bacterial pathogen infection as compared to the susceptible and/or the reference plants of the same species.
plant_trait_ontology
TO:0000315
It represents the damage done by the diease and/or the pathogen to the plant. The damage is a direct measure of resistance to the particular bacterial strain causing the disease.
bacterial disease resistance
The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a bacterial pathogen infection as compared to the susceptible and/or the reference plants of the same species.
Gramene:pankaj_jaiswal
The photosynthesis ability determined on a plant or the plant part under stress.
plant_trait_ontology
PHOTOSYNAB (related)
TO:0000316
Methods may include actual measurements on photosynthesis, pigment content or the content and composition of enzymes associated with photosynthesis.
photosynthetic ability
The photosynthesis ability determined on a plant or the plant part under stress.
Gramene:pankaj_jaiswal
Causal agent: Spodoptera litura.
plant_trait_ontology
CUWRRS (related)
TO:0000317
cutworm resistance
Causal agent: Spodoptera litura.
Gramene:pankaj_jaiswal
Amount of reducing sugar present in the plant or plant part.
plant_trait_ontology
REDSUGCN (related)
TO:0000318
A reducing sugar is any sugar which in basic solution forms contain aldehyde or ketone groups that are oxidised to carboxylic acids.
reducing sugar content
Amount of reducing sugar present in the plant or plant part.
Gramene:pankaj_jaiswal
Amount of Rubisco enzyme or protein present in a given plant or the plant part.
plant_trait_ontology
RUBISCOCN (related)
TO:0000319
rubisco content
Amount of Rubisco enzyme or protein present in a given plant or the plant part.
Gramene:pankaj_jaiswal
A chlorophyll content trait (TO:0000495) which is ratio of the amount of RuBisCo protein to that of the chlorophyll content (TO:0000495) in a plant strucure (PO:0009011).
plant_trait_ontology
RUBISCOCHLRO (related)
TO:0000320
chlorophyll to rubisco ratio
A chlorophyll content trait (TO:0000495) which is ratio of the amount of RuBisCo protein to that of the chlorophyll content (TO:0000495) in a plant strucure (PO:0009011).
Gramene:pankaj_jaiswal
TO:cooperl
A ratio of the amount of rubisco protein to that of the total nitrogen content in a plant or plant part.
plant_trait_ontology
RUBISCONICNRO (related)
TO:0000321
rubisco to nitrogen content ratio
A ratio of the amount of rubisco protein to that of the total nitrogen content in a plant or plant part.
Gramene:pankaj_jaiswal
A plant quality trait (TO:0000597) which is the evaluation of whether the plant phenotype is meeting the breeding objectives.
plant_trait_ontology
PAcp (related)
overall liking (related)
TO:0000322
Breeding objectives vary for each trait and variety. The evaluation should reflect the overall acceptability of the variety.
phenotypic acceptability
A plant quality trait (TO:0000597) which is the evaluation of whether the plant phenotype is meeting the breeding objectives.
IRRI:SES
TO:cooperl
Causal agent: Magnaporthe salvinii (Nakataea sigmoidea, Sclerotium oryzae), and Helminthosporium sigmoideum var. irregulare. Symptoms: dark lesions develop on the stems near the water line. Small, dark bodies (sclerotia) develop, weaken the stem and cause lodging.
plant_trait_ontology
CULMROTRS (related)
SR (related)
TO:0000323
stem rot disease resistance
Causal agent: Magnaporthe salvinii (Nakataea sigmoidea, Sclerotium oryzae), and Helminthosporium sigmoideum var. irregulare. Symptoms: dark lesions develop on the stems near the water line. Small, dark bodies (sclerotia) develop, weaken the stem and cause lodging.
Gramene:pankaj_jaiswal
IRRI:SES
A ratio of the amount of rubisco protein to that of the soluble protein content in a plant or plant part.
plant_trait_ontology
RUBISCOSPROTRO (related)
TO:0000324
rubisco to soluble protein ratio
A ratio of the amount of rubisco protein to that of the soluble protein content in a plant or plant part.
Gramene:pankaj_jaiswal
Amount of the soluble protein present in the plant or the plant part.
plant_trait_ontology
SPROTCN (related)
TO:0000325
soluble protein content
Amount of the soluble protein present in the plant or the plant part.
Gramene:pankaj_jaiswal
A leaf morphology trait (TO:0000748) which is the color of a leaf (PO:0025034).
jaiswalp
PATO:0000014
plant_trait_ontology
LFCL (related)
TO:0000326
Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
leaf color
A leaf morphology trait (TO:0000748) which is the color of a leaf (PO:0025034).
Gramene:pankaj_jaiswal
PO:0025034
TO:cooperl
A yield trait (TO: 0000371) that is the amount of a plant structure (PO:0009011) or portion of plant substance (PO:0025161) produced by the shoot system (PO:0009006) which is harvested.
TO_GIT:289
plant_trait_ontology
BIOMYLD (related)
BY (related)
TO:0000327
shoot system yield trait
A yield trait (TO: 0000371) that is the amount of a plant structure (PO:0009011) or portion of plant substance (PO:0025161) produced by the shoot system (PO:0009006) which is harvested.
ISBN:0198506732
TO:cooperl
The amount of sucrose present in the plant or the plant part.
plant_trait_ontology
SUCROSECN (related)
saccharose content (related)
TO:0000328
sucrose content
The amount of sucrose present in the plant or the plant part.
Gramene:pankaj_jaiswal
Degree of tillering is affected by variety, spacing of plants in the field, season of planting, and environmental conditions e.g. nitrogen levels.
plant_trait_ontology
TIAB (related)
Ti (related)
TO:0000329
tillering ability
Degree of tillering is affected by variety, spacing of plants in the field, season of planting, and environmental conditions e.g. nitrogen levels.
Gramene:pankaj_jaiswal
ISBN:9712200299
It is a measure of percent seed set on the out-pollinated primary panicle.
plant_trait_ontology
extent of outcrossing (related)
extent of outcrossing on male sterile lines (related)
TO:0000330
.
outcrossing potential
It is a measure of percent seed set on the out-pollinated primary panicle.
Gramene:pankaj_jaiswal
IRRI:SES
Catalysis of the reaction: UDP-glucose + D-fructose 6-phosphate = UDP + sucrose 6-phosphate.
plant_trait_ontology
SPS (related)
SPSACT (related)
UDP-glucose-fructose-phosphate glucosyltransferase (related)
sucrose 6-phosphate synthase (related)
sucrose phosphate synthetase (related)
sucrose phosphate-uridine diphosphate glucosyltransferase (related)
sucrose-phosphate synthase activity (related)
sucrosephosphate-UDP glucosyltransferase (related)
uridine diphosphoglucose-fructose phosphate glucosyltransferase (related)
TO:0000331
sucrose phosphate synthase activity trait
Catalysis of the reaction: UDP-glucose + D-fructose 6-phosphate = UDP + sucrose 6-phosphate.
EC:2.4.1.14
GO:0046524
Causal agent: Hydrellia philippina. Symptoms: Leaf margin feeding causes conspicuous damage and sometimes stunting of plants.
plant_trait_ontology
RWM (related)
RWMRS (related)
TO:0000332
rice whorl maggot resistance
Causal agent: Hydrellia philippina. Symptoms: Leaf margin feeding causes conspicuous damage and sometimes stunting of plants.
Gramene:pankaj_jaiswal
IRRI:SES
Amount of sugar present in the plant or the plant part.
plant_trait_ontology
SUGARCN (related)
TO:0000333
sugar content
Amount of sugar present in the plant or the plant part.
Gramene:pankaj_jaiswal
OBSOLETE.
plant_trait_ontology
parental line evaluation (related)
TO:0000334
OBSOLETE hybrid evaluation
true
A ligule morphology trait (TO:0002748) which is the actual shape of the ligule (PO:0020105).
PATO:0000052
plant_trait_ontology
LIGSHP (related)
LS (related)
TO:0000335
Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's
ratios of distances between its features (points, edges, surfaces and
also holes etc).
ligule shape
A ligule morphology trait (TO:0002748) which is the actual shape of the ligule (PO:0020105).
IRRI:SES
PO:0020105
TO:cooperl
A combined activity of both the alpha and beta amylase enzymes.
plant_trait_ontology
TAMYASEACT (related)
amylase activity (related)
TO:0000336
total amylase activity trait
A combined activity of both the alpha and beta amylase enzymes.
EC:3.2.1.-
GO:0016160
Gramene:pankaj_jaiswal
Represents the angle of the tiller in the submerged water fields (flash flooding).
plant_trait_ontology
KNEAB (related)
KnA (related)
tiller angle (related)
TO:0000337
Less is the tiller angle compared to water surface the least is the chance of plant's survivability.
kneeing ability
Represents the angle of the tiller in the submerged water fields (flash flooding).
IRRI:SES
An amylase activity trait (TO:0000703) which is the quality of the hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.
plant_trait_ontology
BETAAMYASEACT (related)
TO:0000338
beta-amylase activity trait
An amylase activity trait (TO:0000703) which is the quality of the hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.
EC:3.2.1.2
GO:0016161
A stem morphology trait (TO:0000361) which is the thickness of a stem (PO:0009047).
TO:0000535
plant_trait_ontology
CULMTH (related)
STEMTH (related)
culm thickness (related)
culm thickness (sensu Poaceae) (related)
TO:0000339
stem thickness
A stem morphology trait (TO:0000361) which is the thickness of a stem (PO:0009047).
Gramene:pankaj_jaiswal
TO:cooperl
Total amount of soluble sugar present in the plant or plant part.
plant_trait_ontology
TSOLSUGARCN (related)
TO:0000340
total soluble sugar content
Total amount of soluble sugar present in the plant or plant part.
Gramene:pankaj_jaiswal
OBSOLETE. A plant genetic trait is a distinguishable feature or a characteristic or a quality of character or a phenotypic feature of a developing or developed plant species which is genetically linked to a physical or genetic marker
TO:0000005
plant_trait_ontology
obsolete trait term (related)
TO:0000341
OBSOLETE plant genetic trait
true
OBSOLETE. A plant genetic trait is a distinguishable feature or a characteristic or a quality of character or a phenotypic feature of a developing or developed plant species which is genetically linked to a physical or genetic marker
Gramene:pankaj_jaiswal
Represents the angle of panicle axis.
plant_trait_ontology
PnAk (related)
TO:0000342
panicle axis angle
Represents the angle of panicle axis.
IRRI:SES
A common grass weed Echinochloa glabbrescens or Echinochloa crus-galli (Barnyard grass), Typha spp. (Cattails), Leptochloa fascicularis (Bearded sprangletop) grows as a weed in the rice field. Can be distinguished from rice plant by the leaf shape, venation, stem cross-section and plant shape leaf shape.
plant_trait_ontology
TO:0000343
grass weed
A common grass weed Echinochloa glabbrescens or Echinochloa crus-galli (Barnyard grass), Typha spp. (Cattails), Leptochloa fascicularis (Bearded sprangletop) grows as a weed in the rice field. Can be distinguished from rice plant by the leaf shape, venation, stem cross-section and plant shape leaf shape.
Gramene:pankaj_jaiswal
ISBN:9712200299
http://www.ipm.ucdavis.edu/PMG/r682700999.html
A flowering time trait (TO:0002616) which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence).
TO_GIT:269
days to flowering (exact)
Delay in flowering time (narrow)
plant_trait_ontology
DTFL (related)
TO:0000344
Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower.
days to flowering trait
A flowering time trait (TO:0002616) which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence).
Gramene:pankaj_jaiswal
TO:cooperl
plant_trait_ontology
SDVIA (related)
TO:0000345
seed viability
Number of tillers per plant, should represent most plants within a study.
plant_trait_ontology
TINB (related)
TO:0000346
tiller number
Number of tillers per plant, should represent most plants within a study.
IRRI:SES
Weeds reduce the yield regardless of planting season. They compete for sunlight, nutrients and water. If any of these is lacking, the others cannot be used effectively, even if a lot are present. Thus, the competition results in poor plant growth and less yield.
plant_trait_ontology
TO:0000347
weed damage
Weeds reduce the yield regardless of planting season. They compete for sunlight, nutrients and water. If any of these is lacking, the others cannot be used effectively, even if a lot are present. Thus, the competition results in poor plant growth and less yield.
Gramene:pankaj_jaiswal
ISBN:9712200299
Causal agent: Sogatodes orizicola (Muir), Sagotella furcifera and Sogatodes cubanus. Sogatodes orizicola is also a vector for the Rice black streaked dwarf fijivirus and rice hoja blanca virus (RHBV).
plant_trait_ontology
SAGRS (related)
TO:0000348
sogatodes resistance
Causal agent: Sogatodes orizicola (Muir), Sagotella furcifera and Sogatodes cubanus. Sogatodes orizicola is also a vector for the Rice black streaked dwarf fijivirus and rice hoja blanca virus (RHBV).
Gramene:pankaj_jaiswal
true
Abortion of microspore development at bi-nucleate stage.
plant_trait_ontology
CMS-HL (related)
HLCMS (related)
TO:0000350
cms-hl type
Abortion of microspore development at bi-nucleate stage.
Gramene:pankaj_jaiswal
IRRI:SES
Sensitivity to the zinc content in the growth medium. It acts as cofactor for certain enzymes like Class II aldolases, metalloproteases, alkaline phosphatase, etc.
plant_trait_ontology
PDef (related)
ZNSN (related)
zinc deficiency (related)
TO:0000351
zinc sensitivity
Sensitivity to the zinc content in the growth medium. It acts as cofactor for certain enzymes like Class II aldolases, metalloproteases, alkaline phosphatase, etc.
Gramene:pankaj_jaiswal
IRRI:SES
The dry weight of the whole plant.
plant_trait_ontology
DMASS (related)
PTDWT (related)
RTWT (related)
dry mass (related)
total dry mass (related)
TO:0000352
plant dry weight
The dry weight of the whole plant.
Gramene:pankaj_jaiswal37
Abortion at later stage of microspore development, the pollen looks like fertile pollen.
plant_trait_ontology
PMTABR (related)
TO:0000353
aborted at pollen maturity stage
Abortion at later stage of microspore development, the pollen looks like fertile pollen.
Gramene:pankaj_jaiswal
IRRI:SES
Sensitivity to aluminum content in the growth media.
aluminium sensitivity (exact)
plant_trait_ontology
ALSN (related)
aluminum toxicity (related)
TO:0000354
aluminum sensitivity
Sensitivity to aluminum content in the growth media.
Gramene:pankaj_jaiswal
Exceptional vigor of growth etc. in plants or in animal, resulting from cross breeding among inter or intra species.
plant_trait_ontology
HET (related)
heterosis in f1 hybrid (related)
hybrid vigor (related)
TO:0000355
heterosis
Exceptional vigor of growth etc. in plants or in animal, resulting from cross breeding among inter or intra species.
Gramene:pankaj_jaiswal
Causal agent: Cochliobolus miyabeanus (Bipolaris oryzae, Drechslera oryzae). Symptom: typical leaf spots are small, oval or circular and dark brown. Larger lesions usually have same color on the edges but have a pale (usually grayish) center. Most spots have a light yellow halo around the outer edge.
plant_trait_ontology
BS (related)
TO:0000356
brown spot disease resistance
Causal agent: Cochliobolus miyabeanus (Bipolaris oryzae, Drechslera oryzae). Symptom: typical leaf spots are small, oval or circular and dark brown. Larger lesions usually have same color on the edges but have a pale (usually grayish) center. Most spots have a light yellow halo around the outer edge.
Gramene:pankaj_jaiswal
IRRI:SES
A plant trait (TO:0000387) which is the growth (GO:0048590) and development (GO:0032502) of a plant anatomical entity (PO:0025131) or a constituent cellular component (GO:0005575).
jaiswalp
GO:0032502
GO:0048590
TO_GIT:248
plant_trait_ontology
TO:0000357
Growth and development traits are qualities of the development of the whole plant or plant parts.
plant growth and development trait
A plant trait (TO:0000387) which is the growth (GO:0048590) and development (GO:0032502) of a plant anatomical entity (PO:0025131) or a constituent cellular component (GO:0005575).
Gramene:pankaj_jaiswal
TO:cooperl
plant_trait_ontology
FEMST (related)
TO:0000358
female sterility
A flowering time trait which is the timing of the flowering (anthesis) of female flowers.
plant_trait_ontology
DTSLK (related)
FEMFLW (related)
FFLW (related)
Female flower anthesis (related)
Female flower flowering (related)
days to silk (related)
TO:0000359
Ofetn influenced by the environemnt that includes, day light, temperature and geographic location.
female flowering
A flowering time trait which is the timing of the flowering (anthesis) of female flowers.
Gramene:pankaj_jaiswal
Measure of growth or elongation rate of the leaf in a plant.
plant_trait_ontology
LFELRATE (related)
leaf growth rate (related)
TO:0000360
leaf elongation rate
Measure of growth or elongation rate of the leaf in a plant.
Gramene:pankaj_jaiswal
A shoot axis morphology trait (TO:0000739) which is the quality of a stem (PO:0009047).
TO_GIT:157
core morphology trait (narrow)
plant_trait_ontology
TO:0000361
stem morphology trait
A shoot axis morphology trait (TO:0000739) which is the quality of a stem (PO:0009047).
Gramene:pankaj_jaiswal
PO:0009047
TO:moorel
OBSOLETE.
plant_trait_ontology
TO:0000362
OBSOLETE rot disease
true
true
Changes monitored in leaf collar color.
plant_trait_ontology
CC (related)
LFCCL (related)
collar color (related)
TO:0000364
leaf collar color
Changes monitored in leaf collar color.
IRRI:SES
A flowering time trait (TO:0002616) which is the timing of the flowering (anthesis) of male flowers.
plant_trait_ontology
MALEFLW (related)
MFLW (related)
male flower anthesis (related)
male flower flowering (related)
TO:0000365
Often influenced by the environment that includes, daylight, temperature and geographic location.
male flowering
A flowering time trait (TO:0002616) which is the timing of the flowering (anthesis) of male flowers.
Gramene:pankaj_jaiswal
Measure of time taken by the reproductive growth phase in a plant's life cycle.
plant_trait_ontology
RGTM (related)
TO:0000366
reproductive growth time
Measure of time taken by the reproductive growth phase in a plant's life cycle.
Gramene:pankaj_jaiswal
The changes in the color of basal leaf sheath.
plant_trait_ontology
BALFSCL (related)
BLSC (related)
TO:0000367
basal leaf sheath color
The changes in the color of basal leaf sheath.
IRRI:SES
plant_trait_ontology
SHELRATE (related)
elongation of plant height (related)
TO:0000368
shoot elongation rate
Measure of the vegetative growth phase time in a plant's life cycle.
plant_trait_ontology
VGTM (related)
TO:0000369
vegetative growth time
Measure of the vegetative growth phase time in a plant's life cycle.
Gramene:pankaj_jaiswal
A leaf morphology trait (TO:0000748) which is the width of a leaf (PO:0025034).
MaizeGDB_QTL:61714
PATO:0000921
TO_GIT:247
plant_trait_ontology
LFWD (related)
LW (related)
lfwid (related)
TO:0000370
Actual measurements, in centimeters of the widest portion of the leaf. To be precise use the children terms leaf lamina width (TO:0002720) or 'leaf sheath width (TO:0002721). Refers to width (PATO:0000921) A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
leaf width
A leaf morphology trait (TO:0000748) which is the width of a leaf (PO:0025034).
IRRI:SES
PO:0025034
TO:cooperl
TO:moorel
lfwid (related)
MaizeGDB_QTL:61714
A plant trait (TO:0000387) which is a harvestable product that is a plant anatomical entity (PO:0025131) or one or more constituent cellular components (GO:0005575) contained therein.
plant_trait_ontology
YLD (related)
TO:0000371
yield trait
A plant trait (TO:0000387) which is a harvestable product that is a plant anatomical entity (PO:0025131) or one or more constituent cellular components (GO:0005575) contained therein.
Gramene:pankaj_jaiswal
TO:cooperl
Ratio of amount of amylose to amylopectin content.
plant_trait_ontology
AMYAMYPCTRO (related)
TO:0000372
amylose to amylopectin ratio
Ratio of amount of amylose to amylopectin content.
Gramene:pankaj_jaiswal
A reproductive shoot system morphology trait (TO:0000786) that is a quality of an inflorescence (PO:0009049).
TO:0000363
TO:0000584
TO:0000585
TO_GIT:92
TO_GIT:97
Head morphology trait (narrow)
plant_trait_ontology
inflorescence structure trait (related)
TO:0000373
inflorescence morphology trait
A reproductive shoot system morphology trait (TO:0000786) that is a quality of an inflorescence (PO:0009049).
Gramene:pankaj_jaiswal
PO:0009049
A cooking quality trait that is the tendency of gelatinized starch granules to break during cooking, especially at high temperature.
plant_trait_ontology
BRKVIS (related)
TO:0000374
Breakdown is usually associated with the tendency of gelatinized starch granules to break during holding at high temperature, accompanied with continuous shearing (Han and Hamaker 2001). Breakdown is usually calculated from a resulting viscogram by subtracting trough from peak viscosity. The increase in rice flour breakdown viscosity, although not always significant (P < 0.05), suggests a greater protection of the starch granule integrity. This probably is due to the increased affinity of proteins to interact with starch, as a result of protein denaturation. The resulting formation of protein–starch complexes tends to increase rice flour peak viscosity.
breakdown viscosity
A cooking quality trait that is the tendency of gelatinized starch granules to break during cooking, especially at high temperature.
PMCID:PMC434838
TO:cooperl
Breakdown is usually associated with the tendency of gelatinized starch granules to break during holding at high temperature, accompanied with continuous shearing (Han and Hamaker 2001). Breakdown is usually calculated from a resulting viscogram by subtracting trough from peak viscosity. The increase in rice flour breakdown viscosity, although not always significant (P < 0.05), suggests a greater protection of the starch granule integrity. This probably is due to the increased affinity of proteins to interact with starch, as a result of protein denaturation. The resulting formation of protein–starch complexes tends to increase rice flour peak viscosity.
PMCID:PMC434838
A grain length to width ratio (TO:0002731) which is determined from grain length and grain width on dehulled unpolished rice grain.
PATO:0000117
PATO:0000122
PATO:0000921
plant_trait_ontology
BRWRRO (related)
brown rice length to width ratio (related)
TO:0000375
Refer to width PATO:0000921: A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large.
brown rice length to width ratio
A grain length to width ratio (TO:0002731) which is determined from grain length and grain width on dehulled unpolished rice grain.
Gramene:pankaj_jaiswal
TO:moorel
plant_trait_ontology
CONVIS (related)
TO:0000376
consistency viscosity
plant_trait_ontology
CKKEL (related)
cooked kernel elongation (related)
TO:0000377
cooked grain elongation
Causal agent: Monographella albescens (Microdochium oryzae). Symptoms: the lesions occurs mostly near leaf tips, but sometimes start at the margin of the blade and develops into large ellipsoid areas encircled by dark-brown, narrow bands accompanied by a light-brown halo.
plant_trait_ontology
LFSRS (related)
LSc (related)
TO:0000378
leaf scald disease resistance
Causal agent: Monographella albescens (Microdochium oryzae). Symptoms: the lesions occurs mostly near leaf tips, but sometimes start at the margin of the blade and develops into large ellipsoid areas encircled by dark-brown, narrow bands accompanied by a light-brown halo.
Gramene:pankaj_jaiswal
IRRI:SES
plant_trait_ontology
CPVIS (related)
TO:0000379
cool paste viscosity
OBSOLETE.
plant_trait_ontology
TO:0000380
OBSOLETE planthopper
true
The percentage of cracked dehulled grain with most of the size still intact.
plant_trait_ontology
CRKGRPCENT (related)
fissured grain percentage (related)
TO:0000381
cracked grain percentage
The percentage of cracked dehulled grain with most of the size still intact.
Gramene:pankaj_jaiswal
A grain weight (TO:0000919) which is the weight of a sample of 1000 grains (caryopsis fruit; PO:0030104), with the caryopsis hull (PO:0006000).
TO:0000533
1000-grain weight (exact)
TGRWT (exact)
thousand grain weight (exact)
plant_trait_ontology
TSDWT (related)
thousand seed weight (related)
TO:0000382
Thousand grain weights are measured in grams, on a precision balance, on 1000 well-developed whole grains (with the caryopsis hull; PO:0006000), dried to 13% moisture content.
1000-grain weight
A grain weight (TO:0000919) which is the weight of a sample of 1000 grains (caryopsis fruit; PO:0030104), with the caryopsis hull (PO:0006000).
Gramene:pankaj_jaiswal
Percentage opaque white area in the kernel belly.
plant_trait_ontology
GRBPCENTWHT (related)
TO:0000383
grain belly percent white
Percentage opaque white area in the kernel belly.
Gramene:pankaj_jaiswal
An assay to determine the resistance exhibited by a plant or a group of plants (population) in response to nematode infestation as compared to the susceptible and/or the reference plants of the same species.
plant_trait_ontology
NDRS (related)
TO:0000384
nematode damage resistance
An assay to determine the resistance exhibited by a plant or a group of plants (population) in response to nematode infestation as compared to the susceptible and/or the reference plants of the same species.
Gramene:pankaj_jaiswal
A grain color (TO:0002617) trait which is the color of dehulled, milled grain (caryopsis fruit; PO:0030104).
PATO:0000014
plant_trait_ontology
GRCL (related)
MGRCL (related)
TO:0000385
Dehulled, milled grains have had the caryopsis hull (PO:0006000) removed, as well as the pericarp (PO:0009084), aleurone layer (PO:0005360) and germ (plant embryo; PO:0009009). Refers to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts.
milled grain color
A grain color (TO:0002617) trait which is the color of dehulled, milled grain (caryopsis fruit; PO:0030104).
Gramene:pankaj_jaiswal
PATO:0000014
TO:cooperl
TO:moorel
Causal agent: rice ragged stunt virus (RRSV). Symptoms: plants are stunted but remain dark green. Leaves are ragged and twisted. Vein swelling on leaf collar, leaf blades and leaf sheaths.
plant_trait_ontology
RSVRS (related)
TO:0000386
rice ragged stunt virus resistance
Causal agent: rice ragged stunt virus (RRSV). Symptoms: plants are stunted but remain dark green. Leaves are ragged and twisted. Vein swelling on leaf collar, leaf blades and leaf sheaths.
Gramene:pankaj_jaiswal,
IRRI:SES
A measurable or observable characteristic of a cellular component (GO:0005575), biological process (GO:0008150) or molecular function (GO:0003674) that is part of, or has participant a plant anatomical entity (PO:0025131) and/or a plant structure development stage (PO:0009012).
jaiswalp
TO_GIT:52
plant_trait_ontology
plant phenotype (related)
plant quality (related)
TO:0000387
This includes physiological, molecular and biochemical traits as well.
plant trait
A measurable or observable characteristic of a cellular component (GO:0005575), biological process (GO:0008150) or molecular function (GO:0003674) that is part of, or has participant a plant anatomical entity (PO:0025131) and/or a plant structure development stage (PO:0009012).
GO:0003674
GO:0005575
GO:0008150
Gramene:pankaj_jaiswal
PO:0009012
PO:0025131
TO:cooperl
Yield of forage matter upon harvest.
plant_trait_ontology
FRGYLD (related)
FY (related)
straw yield (related)
TO:0000388
forage yield
Yield of forage matter upon harvest.
Gramene:pankaj_jaiswal
Shows mendelian inheritance, caused by genetic modifications or mutations in the nuclear genome.
scale:6
plant_trait_ontology
TO:0000389
nuclear mediated male sterility
Shows mendelian inheritance, caused by genetic modifications or mutations in the nuclear genome.
Gramene:pankaj_jaiswal
IRRI:SES
Percentage opaque white area in the kernel core.
plant_trait_ontology
GRCPCENTWHT (related)
TO:0000390
grain core percent white
Percentage opaque white area in the kernel core.
Gramene:pankaj_jaiswal
A seed morphology trait (TO:0000184) which is the size of a seed (PO:0009010).
PATO:0000117
TO_GIT:183
plant_trait_ontology
TO:0000391
Seed size is determined by the ratio of the seed length to seed width and is a component of seed quality (TO:0000162). Seed size may be a qualitative measure or may be organized into categories ranging from small to medium to large. Refers to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.
seed size
A seed morphology trait (TO:0000184) which is the size of a seed (PO:0009010).
Gramene:pankaj_jaiswal
PO:0009010
TO:cooperl
A plant trait (TO:0000387) which is a measure of either the fertility or sterility, contributed by nonfunctional male and or female plant parts or their incompatible interaction. This also includes traits on seed setting behavior in the fruit (caryopsis) of a grass plant that can be assayed in terms of spikelet sterility or fertility.
plant_trait_ontology
TO:0000392
sterility or fertility trait
A plant trait (TO:0000387) which is a measure of either the fertility or sterility, contributed by nonfunctional male and or female plant parts or their incompatible interaction. This also includes traits on seed setting behavior in the fruit (caryopsis) of a grass plant that can be assayed in terms of spikelet sterility or fertility.
Gramene:pankaj_jaiswal
OBSOLETE.
plant_trait_ontology
TO:0000393
OBSOLETE yield and yield component
true
Response by the plant in terms of sensitivity to sufficiently prolonged water deficit/scarcity or scanty water content in the soil or growth medium, that can cause damage to the plant.
plant_trait_ontology
dessication related trait (related)
TO:0000394
drought related trait
Response by the plant in terms of sensitivity to sufficiently prolonged water deficit/scarcity or scanty water content in the soil or growth medium, that can cause damage to the plant.
Gramene:pankaj_jaiswal
true
A fruit yield trait (TO:0000871) that is the amount of grain.
TO_GIT:242
plant_trait_ontology
GRYLD (related)
Yld (related)
TO:0000396
In rice, the grain yield is often measured in kilograms per hectare at 14 percent moisture, if the experiment was done on a field trial.
grain yield trait
A fruit yield trait (TO:0000871) that is the amount of grain.
IRRI:SES
TO:contributors
TO:cooperl
A caryopsis fruit morphology trait (TO:0001079) which is the size of the grain (caryopsis fruit; PO:0030104).
GRSZ (exact)
plant_trait_ontology
TO:0000397
Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large.
grain size
A caryopsis fruit morphology trait (TO:0001079) which is the size of the grain (caryopsis fruit; PO:0030104).
Gramene:pankaj_jaiswal
PO:0009084
TO:moorel
A plant structure morphology trait (TO:0000839) which is a quality of a whole plant (PO:0000003).
plant_trait_ontology
TO:0000398
whole plant morphology trait
A plant structure morphology trait (TO:0000839) which is a quality of a whole plant (PO:0000003).
PO:0000003
TO:cooperl
A grain quality trait (TO:0000399) which is the thickness of a dehulled grain with a pericarp (PO:0009084).
TO_GIT:264
plant_trait_ontology
GRTH (related)
TO:0000399
grain thickness
A grain quality trait (TO:0000399) which is the thickness of a dehulled grain with a pericarp (PO:0009084).
Gramene:pankaj_jaiswal
PO:0009084
TO:moorel
A lemma morphology trait (TO:1000023) which is the color of the sterile lemma (PO:0009040).
plant_trait_ontology
SLmC (related)
STLEMCL (related)
TO:0000400
Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts.
sterile lemma color
true
true
A lemma morphology trait (TO:1000023) which is the color of the sterile lemma (PO:0009040).
IRRI:SES
PATO:0000014
PO:0009040
TO:cooperl
TO:moorel
A chemical stress sensitivity (TO:0000482) which is the tolerance exhibited by a plant or a group of plants (population) towards the plant growth hormone.
plant_trait_ontology
growth regulator sensitivity (related)
plant hormone response (related)
TO:0000401
plant growth hormone sensitivity
A chemical stress sensitivity (TO:0000482) which is the tolerance exhibited by a plant or a group of plants (population) towards the plant growth hormone.
TO:cooperl
A grain width (TO:0000975) which is the width of the dehulled grain with pericarp (PO:0009084).
PATO:0000921
TO_GIT:123
width of grain without hull (exact)
dehulled grain curved width (narrow)
plant_trait_ontology
DHULGRWD (exact)
GRWD (broad)
dehulled grain width (exact)
TO:0000402
Refer to width PATO:0000921: A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite.
dehulled grain width
A grain width (TO:0000975) which is the width of the dehulled grain with pericarp (PO:0009084).
Gramene:pankaj_jaiswal
PO:0009084
TO:moorel
Causal agent: Cnaphalocrosis medinalis, Marasmia patnalis. Symptoms: larvae consume the leaf tissue except the epidermis, causing typical white streaks. They create a leaf tube during later stages of feeding. Plant is susceptible and resistant check (if available) after every 10-test entries. Replicate the test three times, if seed is available. Determined by percentage of damaged and folded leaves.
plant_trait_ontology
LF (related)
LFFRS (related)
TO:0000403
leaf-folder resistance
Causal agent: Cnaphalocrosis medinalis, Marasmia patnalis. Symptoms: larvae consume the leaf tissue except the epidermis, causing typical white streaks. They create a leaf tube during later stages of feeding. Plant is susceptible and resistant check (if available) after every 10-test entries. Replicate the test three times, if seed is available. Determined by percentage of damaged and folded leaves.
Gramene:pankaj_jaiswal
IRRI:SES
Extent of rooting from the nodes on a stem.
plant_trait_ontology
TO:0000404
nodal rooting
Extent of rooting from the nodes on a stem.
Gramene:pankaj_jaiswal
Causal agent: Nymphula depunctalis. Symptoms: Larvae feed on leaf tissue, leaving only the papery upper epidermis.
plant_trait_ontology
CW (related)
CWRS (related)
float worm (related)
hama putih (indonesian) (related)
paddy caseworm (related)
TO:0000405
caseworm resistance
Causal agent: Nymphula depunctalis. Symptoms: Larvae feed on leaf tissue, leaving only the papery upper epidermis.
Gramene:pankaj_jaiswal
IRRI:SES
A plant quality trait (TO:0000597) which is the percentage of shattered grains, determined by firmly grasping and pulling the hand over the panicle.
plant_trait_ontology
PNTH (related)
Thr (related)
TO:0000406
panicle threshability
A plant quality trait (TO:0000597) which is the percentage of shattered grains, determined by firmly grasping and pulling the hand over the panicle.
IRRI:SES
OBSOLETE.
plant_trait_ontology
TO:0000407
OBSOLETE hoppers
true
plant_trait_ontology
HPVIS (related)
TO:0000408
hot paste viscosity
plant_trait_ontology
PVIS (related)
TO:0000409
peak viscosity
Total protein content of the polished rice.
plant_trait_ontology
POLRPROTCN (related)
TO:0000410
polished rice protein content
Total protein content of the polished rice.
Gramene:pankaj_jaiswal
A caryopsis fruit morphology trait (TO:0001079) which is the ratio of grain length (TO:0000734) to grain width (TO:0002762), including the caryopsis hull (PO:0006000).
GRLGWDRO (exact)
plant_trait_ontology
SDLGWDRO (related)
TO:0000411
grain length to width ratio
A caryopsis fruit morphology trait (TO:0001079) which is the ratio of grain length (TO:0000734) to grain width (TO:0002762), including the caryopsis hull (PO:0006000).
Gramene:pankaj_jaiswal
TO:cooperl
Determined by deducting the peak viscosity from the cool paste viscosity.
plant_trait_ontology
SETBK (related)
SETBKVIS (related)
setback (related)
TO:0000412
setback viscosity
Determined by deducting the peak viscosity from the cool paste viscosity.
Gramene:pankaj_jaiswal37
Causal agent: Rice tungro bacilliform virus (RTBV) and rice tungro spherical virus (RTSV). The disease is transmitted by the green leafhopper Nephotettix spp. Symptoms: Yellow-to-yellow orange leaves, stunting and slightly reduced tillering.
plant_trait_ontology
RTD (related)
RTVRS (related)
TO:0000413
rice tungro virus resistance
Causal agent: Rice tungro bacilliform virus (RTBV) and rice tungro spherical virus (RTSV). The disease is transmitted by the green leafhopper Nephotettix spp. Symptoms: Yellow-to-yellow orange leaves, stunting and slightly reduced tillering.
Gramene:pankaj_jaiswal
IRRI:SES
http://www.fao.org/inpho/vlibrary/t0567e/T0567E03.htm
plant_trait_ontology
WHTRPROTCN (related)
polished rice protein (related)
protein content for polished rice (related)
TO:0000414
white rice protein content
Abortion at bi-nucleate stage of microspore development.
plant_trait_ontology
BNUABR (related)
TO:0000415
An example is CMS-HL in rice.
aborted bi-nucleate stage
Abortion at bi-nucleate stage of microspore development.
Gramene:pankaj_jaiswal
IRRI:SES
Abortion of the embryo sac leading to female sterility.
plant_trait_ontology
EBSABR (related)
TO:0000416
embryo sac abortion
Abortion of the embryo sac leading to female sterility.
Gramene:pankaj_jaiswal
A lemma and palea morphology trait (TO:0000079) which is the extent of pubescence (hairs) on the lemma (PO:0009037) and palea (PO:0009038).
PATO:0001320
plant_trait_ontology
LmPb (related)
TO:0000417
Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down.
lemma and palea pubescence
A lemma and palea morphology trait (TO:0000079) which is the extent of pubescence (hairs) on the lemma (PO:0009037) and palea (PO:0009038).
IRRI:SES
PO:0009037
PO:0009038
TO:moorel
Causal agent: Gibberella fujikuroi. Symptoms: the plant elongates abnormally, has few tillers and usually dies before producing grains.
plant_trait_ontology
BKRS (related)
Bak (related)
TO:0000418
bakanae disease resistance
Causal agent: Gibberella fujikuroi. Symptoms: the plant elongates abnormally, has few tillers and usually dies before producing grains.
Gramene:pankaj_jaiswal
IRRI:SES
A leaf morphology trait (TO:0000748) which is a quality of a vascular leaf (PO:0009025).
jaiswalp
TO_GIT:60
plant_trait_ontology
TO:0000419
vascular leaf morphology trait
A leaf morphology trait (TO:0000748) which is a quality of a vascular leaf (PO:0009025).
Gramene:pankaj_jaiswal
PO:0009025
TO:cooperl
plant_trait_ontology
TO:0000420
fertility related trait
plant_trait_ontology
POFRT (related)
TO:0000421
pollen fertility
Causal agent: Sphaerulina oryzina (Cercospora janseana).
plant_trait_ontology
NBLFSPRS (related)
NBLS (related)
TO:0000422
narrow brown leaf spot disease resistance
Causal agent: Sphaerulina oryzina (Cercospora janseana).
Gramene:pankaj_jaiswal
IRRI:SES
Causal agent: Orseolia oryzae. For the field test to be valid more than 60% of the plants should be affected with not less than 15% silver shoot in the susceptible check. Similarly, 60% of the plants in susceptible check should show silver shoots under green house tests. If any of the test entry in the field evaluation exhibits damage less than 10%, on plant basis, rate it on scale-0, since such a damage could be due to other reasons. Monitor at growth stage 2-5.
plant_trait_ontology
GM (related)
GMRS (related)
TO:0000423
gall midge resistance
Causal agent: Orseolia oryzae. For the field test to be valid more than 60% of the plants should be affected with not less than 15% silver shoot in the susceptible check. Similarly, 60% of the plants in susceptible check should show silver shoots under green house tests. If any of the test entry in the field evaluation exhibits damage less than 10%, on plant basis, rate it on scale-0, since such a damage could be due to other reasons. Monitor at growth stage 2-5.
IRRI:SES
Causal agent: Nilparvata lugens (also Nilaparvata lugens). Symptoms: partial to pronounced yellowing and increasing severity of stunting. Extreme signs are wilting to death of plants. Infested areas in the field may be patchy.
plant_trait_ontology
BPH (related)
BPHRS (related)
TO:0000424
brown planthopper resistance
Causal agent: Nilparvata lugens (also Nilaparvata lugens). Symptoms: partial to pronounced yellowing and increasing severity of stunting. Extreme signs are wilting to death of plants. Infested areas in the field may be patchy.
Gramene:pankaj_jaiswal
IRRI:SES
plant_trait_ontology
ANTCAB (related)
anther culture response (related)
TO:0000425
anther culturability
A stem internode morphology trait (TO:0000756) which is the color of the stem internode (PO:0020142).
TO_GIT:317
TO_GIT:64
plant_trait_ontology
CmlC (related)
INCL (related)
culm internode color (related)
TO:0000426
stem internode color
A stem internode morphology trait (TO:0000756) which is the color of the stem internode (PO:0020142).
IRRI:SES
TO:cooperl
The angle of the culm with respect to the ground surface in a grass plant.
plant_trait_ontology
CULMAG (related)
CmA (related)
TO:0000427
culm angle
The angle of the culm with respect to the ground surface in a grass plant.
IRRI:SES
plant_trait_ontology
CAIND (related)
TO:0000428
callus induction
Plant sensitivity observed in response to different concentrations of salt in the growth medium.
plant_trait_ontology
SALTSN (related)
Sal (related)
saline sensitivity (related)
TO:0000429
salt sensitivity
Plant sensitivity observed in response to different concentrations of salt in the growth medium.
IRRI:SES
Rate of germination of the seed.
plant_trait_ontology
GERMRATE (related)
GERMSP (related)
germination speed (related)
TO:0000430
germination rate
Rate of germination of the seed.
Gramene:pankaj_jaiswal
An ear infructescence morphology trait (TO:0000976) that is the length of an ear infructescence (PO:0025597) from base to tip.
MaizeGDB_QTL:78112
PATO:0000122
TO_GIT:132
ear infructescence length (exact)
plant_trait_ontology
EARLG (related)
earln (related)
TO:0000431
Refers to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. In maize, this is measured in centimeters.
ear length
An ear infructescence morphology trait (TO:0000976) that is the length of an ear infructescence (PO:0025597) from base to tip.
TO:cooperl
earln (related)
MaizeGDB_QTL:78112
Response by the plant in terms of sensitivity to temperature stress.
plant_trait_ontology
TO:0000432
temperature response trait
Response by the plant in terms of sensitivity to temperature stress.
Gramene:pankaj_jaiswal
An ear infructescence morphology trait (TO:0000976) that is the diameter of an ear infructescence (PO:0025597).
MaizeGDB_QTL:78113
PATO:0001334
TO_GIT:132
ear infructescence diameter (exact)
plant_trait_ontology
EARDIA (related)
eard (related)
TO:0000433
Refers to diameter (PATO:0001334): A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary. In maize, this is measured in centimeters.
ear diameter
An ear infructescence morphology trait (TO:0000976) that is the diameter of an ear infructescence (PO:0025597).
Gramene:pankaj_jaiswal37
TO:cooperl
eard (related)
MaizeGDB_QTL:78113
plant_trait_ontology
RTACT (related)
TO:0000434
root activity
plant_trait_ontology
SDLNG (related)
TO:0000435
seed longevity
Determined by counting the filled and unfilled spikelets of the bagged grass inflorescence.
plant_trait_ontology
SPKST (related)
TO:0000436
spikelet sterility
Determined by counting the filled and unfilled spikelets of the bagged grass inflorescence.
Gramene:pankaj_jaiswal
IRRI:SES
In plants, it represents the incompetence of the pollen to fertilize the ovum. Reasons could be non-viable pollen, incompatibility, pollen abortion, toxicity, genetic etc. Usually determined by either the pollen sterility or spikelet fertility (percent seed set).
plant_trait_ontology
MALEST (related)
degree of male sterility of male sterile lines (related)
male sterility measure (related)
TO:0000437
male sterility
In plants, it represents the incompetence of the pollen to fertilize the ovum. Reasons could be non-viable pollen, incompatibility, pollen abortion, toxicity, genetic etc. Usually determined by either the pollen sterility or spikelet fertility (percent seed set).
Gramene:pankaj_jaiswal
true
The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a fungal pathogen infection as compared to the susceptible and/or the reference plants of the same species.
plant_trait_ontology
TO:0000439
It represents the damage done by the diease and/or the pathogen to the plant. The damage is a direct measure of resistance to the particular fungal strain causing the disease.
fungal disease resistance
The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a fungal pathogen infection as compared to the susceptible and/or the reference plants of the same species.
Gramene:pankaj_jaiswal
Number of grains (full grain with hull) present in one plant.
plant_trait_ontology
GRNBPPT (related)
TO:0000440
grain number per plant
Number of grains (full grain with hull) present in one plant.
Gramene:pankaj_jaiswal37
plant_trait_ontology
TO:0000441
humidity related trait
Fresh weight of the plant.
plant_trait_ontology
PLFWT (related)
TO:0000442
plant fresh weight
Fresh weight of the plant.
Gramene:pankaj_jaiswal37
An infructescence yield trait (TO:0000936) that is the number of ears (ear infructescence; PO:0025597) on a plant or the average number present in population.
TO_GIT:244
plant_trait_ontology
EARNB (related)
ENO (related)
ENP (related)
ear number per plant (related)
ears per 10 plants (related)
ears per plant (related)
TO:0000443
To be used only for traits from maize.
ear infructescence number
An infructescence yield trait (TO:0000936) that is the number of ears (ear infructescence; PO:0025597) on a plant or the average number present in population.
Gramene:pankaj_jaiswal
TO:cooperl
plant_trait_ontology
TO:0000444
parasitic weed
A fruit morphology trait (TO:0002629) which is the number of seeds (PO:0009010) in a fruit (PO:0009001).
TO:0000139
plant_trait_ontology
SDNB (related)
TO:0000445
fruit seed number
A fruit morphology trait (TO:0002629) which is the number of seeds (PO:0009010) in a fruit (PO:0009001).
Gramene:pankaj_jaiswal
PO:0009001
PO:0009010
A leaf morphology trait (TO:0000748) which is the drying of a leaf (PO:0025034).
plant_trait_ontology
LFDRY (related)
TO:0000446
May be a response to abiotic stress. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
leaf drying
A leaf morphology trait (TO:0000748) which is the drying of a leaf (PO:0025034).
PO:0025034
TO:cooperl
TO:moorel
Determined by counting the number of spikelets filled with grain in one inflorescence (panicle).
TO:0000438
FGRNB (exact)
filled grain number per panicle (exact)
number of grains per panicle (exact)
plant_trait_ontology
FILGRNB (related)
GRNBPPN (related)
filled fruit number (related)
grain number per panicle (sensu Oryza) (related)
TO:0000447
Another trait seed number (TO:0000445) is directly associated with it.
filled grain number
Determined by counting the number of spikelets filled with grain in one inflorescence (panicle).
Gramene:pankaj_jaiswal
Determined by counting the percent spikelets filled with grain in one grass inflorescence (panicle) or plant.
plant_trait_ontology
FGRPCENT (related)
Filled grain percent per panicle (related)
TO:0000448
filled grain percentage
Determined by counting the percent spikelets filled with grain in one grass inflorescence (panicle) or plant.
Gramene:pankaj_jaiswal
Average weight of dehulled grains per plant.
plant_trait_ontology
GRYLDPPL (related)
TO:0000449
grain yield per plant
Average weight of dehulled grains per plant.
Gramene:pankaj_jaiswal
Average weight of dehulled grains per panicle.
GRYLDPPN (exact)
plant_trait_ontology
TO:0000450
grain yield per panicle
Average weight of dehulled grains per panicle.
Gramene:pankaj_jaiswal
A ratio of number of large vascular bundles present in the spikelets to the number of spikelets in a grass inflorescence.
plant_trait_ontology
LVBNBSPKNBRO (related)
TO:0000451
large vascular bundle number to spikelet number ratio
A ratio of number of large vascular bundles present in the spikelets to the number of spikelets in a grass inflorescence.
Gramene:pankaj_jaiswal
A ratio of leaf area to the number of spikelets in a grass inflorescence.
plant_trait_ontology
LFARSPKNBRO (related)
TO:0000452
Often measured using the flag leaf.
leaf area to spikelet number ratio
A ratio of leaf area to the number of spikelets in a grass inflorescence.
Gramene:pankaj_jaiswal
A ratio of number of tiller bearing the panicles to the total number of tillers in rice.
plant_trait_ontology
PNTIRO (related)
panicle tiller ratio (related)
productive tiller percent (related)
TO:0000453
Not all the tillers bear panicle.
panicle to tiller ratio
A ratio of number of tiller bearing the panicles to the total number of tillers in rice.
Gramene:pankaj_jaiswal
Causal agents: Chilo suppressalis (striped), C. polychrysus (dark headed), Rupela albinella (South American white), Scirpophaga incertulas (yellow), S innotata (white), Sesamia inferens (pink), Maliarpha separatella (african whiteheads), Diopsis macrophthalma (stalked-eyed fly), and several other species.
plant_trait_ontology
CULMBRRS (related)
SB (related)
TO:0000454
stem borer resistance
Causal agents: Chilo suppressalis (striped), C. polychrysus (dark headed), Rupela albinella (South American white), Scirpophaga incertulas (yellow), S innotata (white), Sesamia inferens (pink), Maliarpha separatella (african whiteheads), Diopsis macrophthalma (stalked-eyed fly), and several other species.
Gramene:pankaj_jaiswal
IRRI:SES
An infructescence morphology trait (TO:0000920) which is the percent of seeds (PO:0009010) set in an infructescence (PO:0006342).
plant_trait_ontology
SDSPCENT (related)
percent seed set (related)
TO:0000455
seed set percent
A spikelet morphology trait (TO:0000657) which is the average number of spikelets (PO:0009051) in one or more inflorescence (PO:0009049) (e.g. rice panicle) found in a plant or on all plants of a study.
plant_trait_ontology
SPKNB (related)
number of spikelets per panicle (related)
spikelet number per panicle (related)
TO:0000456
spikelet number
A spikelet morphology trait (TO:0000657) which is the average number of spikelets (PO:0009051) in one or more inflorescence (PO:0009049) (e.g. rice panicle) found in a plant or on all plants of a study.
Gramene:pankaj_jaiswal
PO:0009049
PO:0009051
TO:moorel
plant_trait_ontology
TBIOMYLD (related)
dry matter yield (related)
total dry weight (related)
TO:0000457
total biomass yield
Scores are taken after 10 days following soaking rain or watering- Indicate the degree of stress before recovery.
plant_trait_ontology
DRR (related)
TO:0000458
drought recovery
Scores are taken after 10 days following soaking rain or watering- Indicate the degree of stress before recovery.
IRRI:SES
Length of the root epidermal cell (PO:0025164).
plant_trait_ontology
RTEPCELLG (related)
TO:0000459
root epidermal cell length
Length of the root epidermal cell (PO:0025164).
Gramene:pankaj_jaiswal37
TO:cooperl
plant_trait_ontology
light intensity response (related)
TO:0000460
light intensity sensitivity
plant_trait_ontology
BAVEGPH (related)
TO:0000461
basic vegetative phase
Is an indication of gelatinization temperature. Observed by placing six milled-grains/kernels in 10ml 1.7% KOH in a shallow container and arrange them so that they do not touch. Let them stand for 23hrs at 30C temperature and score for spreading. Measure for Alkali digestion is inversely proportional to the gelatinization temperature, e.g. if alkali digestion is low, the gelatinization temperature is high.
plant_trait_ontology
GELTZTMP (related)
TO:0000462
gelatinization temperature
Is an indication of gelatinization temperature. Observed by placing six milled-grains/kernels in 10ml 1.7% KOH in a shallow container and arrange them so that they do not touch. Let them stand for 23hrs at 30C temperature and score for spreading. Measure for Alkali digestion is inversely proportional to the gelatinization temperature, e.g. if alkali digestion is low, the gelatinization temperature is high.
Gramene:pankaj_jaiswal
IRRI:SES
A difference of the average number of days between the maize tassel flowering and the first visible silk (stigma) on the maize ear.
MaizeGDB_QTL:62044
plant_trait_ontology
ANTSKIT (related)
ASI (related)
FLWSLKINTER (related)
TO:0000463
anthesis silking interval
A difference of the average number of days between the maize tassel flowering and the first visible silk (stigma) on the maize ear.
Gramene:pankaj_jaiswal
plant_trait_ontology
ALBPTLDFQ (related)
TO:0000464
albino plantlet differentiation frequency
A biochemical trait (TO:0000277) that is the amount of a particular mineral or ion constituent occurring in a plant anatomical entity (PO:0025131).
jaiswalp
plant_trait_ontology
TO:0000465
May be measured in a dry mass or in a fresh tissue.
mineral and ion content trait
A biochemical trait (TO:0000277) that is the amount of a particular mineral or ion constituent occurring in a plant anatomical entity (PO:0025131).
Gramene:pankaj_jaiswal
Amount of carbon present in the dry mass.
plant_trait_ontology
CBCN (related)
TO:0000466
carbon content
Amount of carbon present in the dry mass.
Gramene:pankaj_jaiswal
Stability of the cell membrane under the impact of temperature (heat) and water deficit stress.
plant_trait_ontology
CELMBSTB (related)
TO:0000467
The trait is often observed in plants as a measure of drought and heat tolerance by determining the amount of solutes/electrolyte leaked from the cell.
cell membrane stability
Stability of the cell membrane under the impact of temperature (heat) and water deficit stress.
Gramene:pankaj_jaiswal
http://www.plantstress.com/methods/CMS_method.htm
Causal agent: Magnaporthe grisea. Symptoms: Can affect either or both the leaf and panicles.
plant_trait_ontology
Bl (related)
LFBLRS (related)
TO:0000468
leaf blast disease resistance
Causal agent: Magnaporthe grisea. Symptoms: Can affect either or both the leaf and panicles.
Gramene:pankaj_jaiswal
IRRI:SES
A plant phenological trait (TO:0000933) which is the number of days from planting to the fruit ripening stage (PO:0025502) or seed maturation stage (PO:0007632).
time to harvest (narrow)
plant_trait_ontology
DTMT (related)
Mat (related)
TO:0000469
days to maturity
A plant phenological trait (TO:0000933) which is the number of days from planting to the fruit ripening stage (PO:0025502) or seed maturation stage (PO:0007632).
IRRI:SES
TO:cooperl
A portion of plant tissue morphology trait (TO:0000843) which is a quality of a vascular tissue and its parts.
plant_trait_ontology
TO:0000470
vascular tissue morphology trait
A portion of plant tissue morphology trait (TO:0000843) which is a quality of a vascular tissue and its parts.
Gramene:pankaj_jaiswal
TO:moorel
Its the fraction of number of penetrated roots over the total number of roots.
plant_trait_ontology
RTPNID (related)
TO:0000471
root penetration index
Its the fraction of number of penetrated roots over the total number of roots.
Gramene:jcl
Gramene:pankaj_jaiswal
A plant structure morphology trait (TO:0000839) which is the number of vascular bundles (PO:0005020) in a plant structure (PO:0009011).
plant_trait_ontology
VBNB (related)
TO:0000472
vascular bundle number
A plant structure morphology trait (TO:0000839) which is the number of vascular bundles (PO:0005020) in a plant structure (PO:0009011).
Gramene:pankaj_jaiswal
Measurement of extent of grain shattering, which depends on development of abscission zone. This trait often refers to shattering or the premature or ease of shedding of the grass fruit called caryopsis from the inflorescence.
plant_trait_ontology
GRSH (related)
caryopsis shattering (related)
TO:0000473
grain shattering
Measurement of extent of grain shattering, which depends on development of abscission zone. This trait often refers to shattering or the premature or ease of shedding of the grass fruit called caryopsis from the inflorescence.
Gramene:pankaj_jaiswal
Angle of opening of glumes is measured on each floret, assessment based on mean angle of glume opening.
plant_trait_ontology
glume angle (related)
opening of glume of male sterile lines (related)
TO:0000474
glume opening
Angle of opening of glumes is measured on each floret, assessment based on mean angle of glume opening.
Gramene:pankaj_jaiswal
IRRI:SES
A root thickness (TO:0000306) trait which is the thickness of a shoot-borne root (PO:0000042).
plant_trait_ontology
ADVRTTH (related)
TO:0000475
Adventitious root can be a 'shoot-borne root' (PO:0000042) or one of the child terms- all have adventitious root as a broad synonym. Shoot-borne roots are still part of the root system (PO:0025025).
adventitious root thickness
A root thickness (TO:0000306) trait which is the thickness of a shoot-borne root (PO:0000042).
TO:cooperl
A metabolite content trait (TO:0000281) which is the amount of plant hormone (CHEBI:37848) in a plant structure (PO:0009011).
CHEBI:37848
plant_trait_ontology
TO:0000476
growth hormone content
A metabolite content trait (TO:0000281) which is the amount of plant hormone (CHEBI:37848) in a plant structure (PO:0009011).
Gramene:pankaj_jaiswal
Causal agent: Magnaporthe grisea (Pyricularia oryzae). Symptoms are dark necrotic lesions covering partially or completely around the panicle base (node) or the uppermost internode or the lower part.
plant_trait_ontology
PB (related)
PNBLRS (related)
TO:0000477
panicle blast disease resistance
Causal agent: Magnaporthe grisea (Pyricularia oryzae). Symptoms are dark necrotic lesions covering partially or completely around the panicle base (node) or the uppermost internode or the lower part.
Gramene:pankaj_jaiswal
IRRI:SES
Measures the growth hormone concentration in a plant or plant part.
plant_trait_ontology
ABA concentration (related)
ABACONC (related)
abscisic acid accumulation (related)
abscisic acid content (related)
TO:0000478
abscisic acid concentration
Measures the growth hormone concentration in a plant or plant part.
Gramene:pankaj_jaiswal
Plant sensitivity to an acidic (pH<7) growth media.
plant_trait_ontology
ADSN (related)
TO:0000479
acid sensitivity
Plant sensitivity to an acidic (pH<7) growth media.
Gramene:pankaj_jaiswal
TO:moorel
A growth media composition sensitivity (TO:0000238) which is the plant's response to an excess or deficient amount of the macro or micronutrient in the growth medium (soil/culture media).
plant_trait_ontology
nutrient deficiency (related)
TO:0000480
nutrient sensitivity
A growth media composition sensitivity (TO:0000238) which is the plant's response to an excess or deficient amount of the macro or micronutrient in the growth medium (soil/culture media).
Gramene:pankaj_jaiswal
TO:moorel
Plant sensitivity to an alkali (pH>7) growth media.
plant_trait_ontology
ALKSN (related)
TO:0000481
alkali sensitivity
Plant sensitivity to an alkali (pH>7) growth media.
Gramene:pankaj_jaiswal
TO:moorel
Response by the plant in terms of resistivity or senility to chemical stress.
plant_trait_ontology
TO:0000482
chemical stress sensitivity
Response by the plant in terms of resistivity or senility to chemical stress.
Gramene:pankaj_jaiswal
Measure of the seed's germination ability at sub-permissive temperature levels.
plant_trait_ontology
GERMABITMP (related)
germination ability at low temperature (related)
TO:0000483
germinability at low temperature
Measure of the seed's germination ability at sub-permissive temperature levels.
Gramene:pankaj_jaiswal
A seed morphology trait (TO:0000184) which is the shape of a seed (PO:0009010).
PATO:0000052
TO_GIT:193
plant_trait_ontology
SDSHP (related)
TO:0000484
Seed shape can be a component of seed quality (TO:0000162). Refers to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
seed shape
A seed morphology trait (TO:0000184) which is the shape of a seed (PO:0009010).
Gramene:pankaj_jaiswal
PO:0009010
TO:moorel
plant_trait_ontology
TO:0000485
sterility related trait
A seed morphology trait (TO:0000184) which is the color of a seed (PO:0009010).
PATO:000014
TO_GIT:192
plant_trait_ontology
SDCL (related)
TO:0000486
Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. In a seed this can be measured on the seed coat or the inside parts of a seed.
seed color
A seed morphology trait (TO:0000184) which is the color of a seed (PO:0009010).
Gramene:pankaj_jaiswal
PO:0009019
TO:moorel
An endosperm morphology trait (TO:0000575) which is the color of an endosperm (PO:0009089).
PATO:0000014
TO_GIT:133
plant_trait_ontology
ENDCL (related)
TO:0000487
Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts.
endosperm color
An endosperm morphology trait (TO:0000575) which is the color of an endosperm (PO:0009089).
Gramene:pankaj_jaiswal
PO:0009089
TO:moorel
plant_trait_ontology
TO:0000488
seed composition quality trait
plant_trait_ontology
TO:0000489
carbohydrate composition related trait
A seed composition based quality trait (TO:0000488) which is the amount of protein (CHEBI_36080) in a seed (PO:0009010).
plant_trait_ontology
TO:0000490
seed protein composition trait
plant_trait_ontology
TO:0000491
fat and essential oil composition related trait
A leaf morphology trait (TO:0000748) which is the variation in shapes and forms of a leaf (PO:0025034).
PATO:0000052
plant_trait_ontology
LFSHP (related)
TO:0000492
Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
leaf shape
A leaf morphology trait (TO:0000748) which is the variation in shapes and forms of a leaf (PO:0025034).
Gramene:pankaj_jaiswal
PO:0025034
TO:cooperl
A leaf morphology trait (TO:0000748) which is the composition of a leaf (PO:0025034).
plant_trait_ontology
TO:0000493
If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
leaf composition trait
A leaf morphology trait (TO:0000748) which is the composition of a leaf (PO:0025034).
PO:0025034
TO:moorel
plant_trait_ontology
TO:0000494
pigment content trait
A pigment content trait (TO:0000494) which is a measure of the chlorophyll a and/or chlorophyll b content in a plant structure (PO:0009011).
plant_trait_ontology
CHLCN (related)
TO:0000495
Chlorophyll is the principal photoreceptor in photosynthesis, the light-driven process in which carbon dioxide is fixed to yield carbohydrates and oxygen. Chlorophyll is a cyclic tetrapyrolle, similar in structure to the heme group of globins (hemoglobin, myoglobin) and cytochromes. Chlorophyll differs from heme in a few major respects, most notably that the central metal ion in chlorophyll is magnesium while that in heme is iron.
chlorophyll content
A pigment content trait (TO:0000494) which is a measure of the chlorophyll a and/or chlorophyll b content in a plant structure (PO:0009011).
Gramene:pankaj_jaiswal
TO:cooperl
The carotenoid content in a plant or plant part. Includes naturally occurring tetra terpenes that are synthesized only in plants.
plant_trait_ontology
CRTCN (related)
TO:0000496
carotenoid content
plant_trait_ontology
RF (related)
TO:0000497
fertility restoration trait
Describes the extent of female fertility restoration in terms of percent seed set.
plant_trait_ontology
FEMRF (related)
TO:0000498
female fertility restoration trait
Describes the extent of female fertility restoration in terms of percent seed set.
Gramene:pankaj_jaiswal
A reproductive shoot system morphology trait (TO:0000786) which is a quality of a flower (PO:0009046).
TO_GIT:57
plant_trait_ontology
TO:0000499
flower morphology trait
A reproductive shoot system morphology trait (TO:0000786) which is a quality of a flower (PO:0009046).
Gramene:pankaj_jaiswal
PO:0009046
TO:cooperl
true
A spikelet morphology trait (TO:0000657) which is the weight of a spikelet (PO:0009051).
PATO:0000128
plant_trait_ontology
SPKWT (related)
TO:0000501
Refer to weight (PATO:0000128): A physical quality inhering in a bearer that has mass near a gravitational body.
spikelet weight
A spikelet morphology trait (TO:0000657) which is the weight of a spikelet (PO:0009051).
Gramene:pankaj_jaiswal
PO:0009051
TO:moorel
Resistance to the KClO3 salt content in the growth medium.
plant_trait_ontology
KCLO3RS (related)
KClO3 resistance (related)
TO:0000502
potassium chlorate resistance
Resistance to the KClO3 salt content in the growth medium.
Gramene:pankaj_jaiswal
A leaf rolling trait (TO:0000085) which is the measure of time taken by the leaf to roll completely under drought or water stress.
plant_trait_ontology
LFRLTM (related)
TO:0000503
leaf rolling time
A leaf rolling trait (TO:0000085) which is the measure of time taken by the leaf to roll completely under drought or water stress.
Gramene:pankaj_jaiswal
TO:moorel
A leaf morphology trait (TO:0000748) which is the leaf surface temperature.
plant_trait_ontology
LFTMP (related)
TO:0000504
If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
leaf temperature
A leaf morphology trait (TO:0000748) which is the leaf surface temperature.
Gramene:pankaj_jaiswal
TO:cooperl
TO:moorel
A leaf morphology trait (TO:0000505) which is the weight of a leaf (PO:0025034).
plant_trait_ontology
LFWT (related)
TO:0000505
If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
leaf weight
A leaf morphology trait (TO:0000505) which is the weight of a leaf (PO:0025034).
Gramene:pankaj_jaiswal
TO:cooperl
TO:moorel
It is a measure of reduced net ammonium production in response to the receipt of photosynthate.
plant_trait_ontology
NIRCYC (related)
nitrogen conservation (related)
TO:0000506
nitrogen recycling
It is a measure of reduced net ammonium production in response to the receipt of photosynthate.
Gramene:pankaj_jaiswal
The ability of the plant to adust the osmotic potential under stress conditions.
plant_trait_ontology
OSADJCAP (related)
TO:0000507
The main role of osmotic adjustment in the plant is to assist in the maintenance of turgor and volume as organs lose water during desiccation, i.e. to provide dehydration tolerance. Often determined by relative water or the amount of solute accumulated at a given water potential.
osmotic adjustment capacity
The ability of the plant to adust the osmotic potential under stress conditions.
Gramene:pankaj_jaiswal
Average maximum length of the root of a plant in a study that have penetrated to a predetermined soil depth.
plant_trait_ontology
PENRTLG (related)
TO:0000508
penetrated root length
Average maximum length of the root of a plant in a study that have penetrated to a predetermined soil depth.
Gramene:pankaj_jaiswal
true
A ratio of penetrated to total number of roots in a plant.
plant_trait_ontology
PENTRTRO (related)
TO:0000510
penetrated to total root ratio
A ratio of penetrated to total number of roots in a plant.
Gramene:pankaj_jaiswal
The total phosphorus ion uptake measured in a plant or a plant part.
plant_trait_ontology
PHOUP (related)
TO:0000511
phosphorus uptake
The total phosphorus ion uptake measured in a plant or a plant part.
Gramene:pankaj_jaiswal
Percent of plants survived under submerged conditions.
plant_trait_ontology
PTSPCENTSUB (related)
TO:0000512
plant survival percentage under submergence
Percent of plants survived under submerged conditions.
Gramene:pankaj_jaiswal
The total potassium ion concentration measured in a plant or a plant part or plant extract.
plant_trait_ontology
KCONC (related)
TO:0000513
potassium concentration
The total potassium ion concentration measured in a plant or a plant part or plant extract.
Gramene:pankaj_jaiswal
The total potassium ion uptake measured in a plant or a plant part.
plant_trait_ontology
KUP (related)
TO:0000514
potassium uptake
The total potassium ion uptake measured in a plant or a plant part.
Gramene:pankaj_jaiswal
A vigor trait (TO:0000250) that is the increase in aboveground biomass in a defined period of time.
TO_GIT:418
plant_trait_ontology
RELGRATE (related)
TO:0000515
Relative growth rate may be calculated in various ways, usually as a rate of growth compared to the amount of starting biomass. In some cases, it may be expressed as a percentage.
relative growth rate
A vigor trait (TO:0000250) that is the increase in aboveground biomass in a defined period of time.
Gramene:pankaj_jaiswal
ISBN:9780044453734
TO:Laurel_Cooper
The relative length of the root determined after a given treatment as compared to the one determined under normal conditions.
plant_trait_ontology
RELRTLG (related)
TO:0000516
relative root length
The relative length of the root determined after a given treatment as compared to the one determined under normal conditions.
Gramene:pankaj_jaiswal
Elongation of the shoot under submergence condition against a reference without submergence.
plant_trait_ontology
RELSHELSUB (related)
TO:0000517
relative shoot elongation under submergence
Elongation of the shoot under submergence condition against a reference without submergence.
Gramene:pankaj_jaiswal
true
It is calculated from the deepest soil layer where roots were present and the longest root measured in the layer.
maximum rooting depth (narrow)
plant_trait_ontology
RTDP (related)
TO:0000519
rooting depth
It is calculated from the deepest soil layer where roots were present and the longest root measured in the layer.
Gramene:pankaj_jaiswal
PMID:12582650
The rate of closure of stomata due to stress or coupled to the rate of photosynthesis and/or transpiration.
plant_trait_ontology
STOCSRRATE (related)
TO:0000520
stomatal complex closure rate
The rate of closure of stomata due to stress or coupled to the rate of photosynthesis and/or transpiration.
Gramene:pankaj_jaiswal
The amount of time taken for a stomatal complex (PO:0002000) to close.
plant_trait_ontology
STOCSRTM (related)
TO:0000521
Stomatal complex closure may be due to stress, or coupled to the rate of photosynthesis and/or transpiration.
stomatal complex closure time
The amount of time taken for a stomatal complex (PO:0002000) to close.
Gramene:pankaj_jaiswal
TO:cooperl
It is a numerical measure of the maximum rate of passage of either water vapour or carbon dioxide through the stomata.
plant_trait_ontology
STOCOND (related)
TO:0000522
stomatal conductance
It is a numerical measure of the maximum rate of passage of either water vapour or carbon dioxide through the stomata.
Gramene:pankaj_jaiswal
Wikipedia:Stomatal_conductance
Stomatal resistance (or its inverse, stomatal conductance) can therefore be calculated from the transpiration rate and humidity gradient. (The humidity gradient is the humidity inside the leaf, determined from leaf temperature based on the assumption that the leaf's air spaces are saturated with vapor, minus the humidity of the ambient air, which is measured directly).
plant_trait_ontology
STORS (related)
TO:0000523
This allows scientists to learn how stomata respond to changes in environmental conditions, such as light intensity, humidity, or carbon dioxide concentration.
stomatal resistance
Stomatal resistance (or its inverse, stomatal conductance) can therefore be calculated from the transpiration rate and humidity gradient. (The humidity gradient is the humidity inside the leaf, determined from leaf temperature based on the assumption that the leaf's air spaces are saturated with vapor, minus the humidity of the ambient air, which is measured directly).
Wikipedia:Stomatal_conductance
plant_trait_ontology
SUBTL (related)
TO:0000524
submergence tolerance
The ratio of total sodium to potassium ion content measured in a plant or a plant part.
plant_trait_ontology
NAKRO (related)
Na/K ratio (related)
sodium to potassium ratio (related)
TO:0000525
sodium to potassium content ratio
The ratio of total sodium to potassium ion content measured in a plant or a plant part.
Gramene:pankaj_jaiswal
The total sodium ion concentration measured in a given volume of a plant or a plant part or plant extract.
plant_trait_ontology
NACONC (related)
TO:0000526
sodium concentration
The total sodium ion concentration measured in a given volume of a plant or a plant part or plant extract.
Gramene:pankaj_jaiswal
The total sodium ion uptake measured in a plant or a plant part.
plant_trait_ontology
NAUP (related)
TO:0000527
sodium uptake
The total sodium ion uptake measured in a plant or a plant part.
Gramene:pankaj_jaiswal
plant_trait_ontology
TSHELSUB (related)
TO:0000528
total shoot elongation under submergence
Number of stomata present on the abaxial surface of leaf.
plant_trait_ontology
ABXSTOFQ (related)
TO:0000529
abaxial stomatal frequency
Number of stomata present on the abaxial surface of leaf.
Gramene:pankaj_jaiswal
Number of stomata present on the adaxial surface of leaf.
plant_trait_ontology
ADXSTOFQ (related)
TO:0000530
adaxial stomatal frequency
Number of stomata present on the adaxial surface of leaf.
Gramene:pankaj_jaiswal
An anther morphology trait (TO:1000022) which is the length (PATO:0000122) of an anther (PO:0009066).
TO_GIT:385
plant_trait_ontology
ANTLG (related)
TO:0000531
Refers to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
anther length
true
true
An anther morphology trait (TO:1000022) which is the length (PATO:0000122) of an anther (PO:0009066).
TO:austin_meier
TO:ethan_johnson
A cardinal organ part morphology trait (TO:0000754) which is the length of the hair of a lemma apiculus (PO:0025616).
plant_trait_ontology
APIHLG (related)
APIHRLG (related)
TO:0000532
lemma apiculus hair length
A cardinal organ part morphology trait (TO:0000754) which is the length of the hair of a lemma apiculus (PO:0025616).
Gramene:pankaj_jaiswal
true
Variation in the color of the culm of a grass plant.
plant_trait_ontology
CULMCL (related)
TO:0000534
culm color
Variation in the color of the culm of a grass plant.
Gramene:pankaj_jaiswal
true
A spikelet floret morphology trait (TO:0000274) which is the color of a spikelet floret (PO:0009082).
TO_GIT:105
plant_trait_ontology
FLCL (related)
TO:0000536
Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts.
spikelet floret color
A spikelet floret morphology trait (TO:0000274) which is the color of a spikelet floret (PO:0009082).
Gramene:pankaj_jaiswal
PATO:0000014
PO:0009082
TO:cooperl
A flower morphology trait (TO:0000499) which is the color of the flower (PO:0009046).
PATO:0000014
plant_trait_ontology
FLCL (related)
TO:0000537
Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts.
flower color
A flower morphology trait (TO:0000499) which is the color of the flower (PO:0009046).
Gramene:pankaj_jaiswal
PO:0009046
TO:moorel
A ratio of the large sized vascular bundles to the leaf surface area.
plant_trait_ontology
LVBNBLFARRO (related)
TO:0000538
large vascular bundle number to leaf area ratio
A ratio of the large sized vascular bundles to the leaf surface area.
Gramene:pankaj_jaiswal
Number of the large sized vascular bundles.
plant_trait_ontology
LVBNB (related)
TO:0000539
large vascular bundle number
Number of the large sized vascular bundles.
Gramene:pankaj_jaiswal
A leaf morphology trait (TO:0000748) which is the total area of a leaf (PO:0025034).
PATO:0001323
plant_trait_ontology
LFAR (related)
TO:0000540
Refer to area (PATO:0001323): A 2-D extent quality inhering in a bearer by virtue of the bearer's two dimensional extent. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
leaf area trait
A leaf morphology trait (TO:0000748) which is the total area of a leaf (PO:0025034).
Gramene:pankaj_jaiswal
PO:0025034
TO:cooperl
A leaf morphology trait (TO:0000748) which is the position of the leaf (PO:0025034) on the plant.
PATO:0000140
TO_GIT:226
plant_trait_ontology
LFHT (related)
leaf height (related)
TO:0000541
Refers to: position (PATO_0000140): A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity. Usually measured from the ground. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
leaf position
A leaf morphology trait (TO:0000748) which is the position of the leaf (PO:0025034) on the plant.
Gramene:pankaj_jaiswal
TO:cooperl
A leaf morphology trait (TO:0000748) which is the ratio of leaf length (TO:0000135) to leaf width (TO:0000370).
plant_trait_ontology
LFLGWDRO (related)
TO:0000542
If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
leaf length to width ratio
A leaf morphology trait (TO:0000748) which is the ratio of leaf length (TO:0000135) to leaf width (TO:0000370).
Gramene:pankaj_jaiswal
TO:cooperl
A leaf composition trait (TO:0000493) which is the amount of nitrogen (CHEBI:51143) in the leaf (PO:0025034).
CHEBI:51143
plant_trait_ontology
LFNICN (related)
TO:0000543
leaf nitrogen content
A leaf composition trait (TO:0000493) which is the amount of nitrogen (CHEBI:51143) in the leaf (PO:0025034).
CHEBI:51143
A mesocotyl morphology trait (TO:0000758) which is the length of a mesocotyl (PO:0020037).
PATO:0000122
TO_GIT:64
plant_trait_ontology
MCTLG (related)
TO:0000544
mesocotyl length
A mesocotyl morphology trait (TO:0000758) which is the length of a mesocotyl (PO:0020037).
Gramene:pankaj_jaiswal
PO:0020037
TO:cooperl
A panicle inflorescence morphology trait (TO:0000847) which is the length of the region between the panicle base to the lowest (the first) primary panicle branch.
PATO:0000122
plant_trait_ontology
PNBLBR (related)
panicle base to first primary branch (related)
panicle base to lowest primary panicle branch (related)
peduncle length from panicle base to first primary branch (related)
TO:0000545
Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points.
panicle base to lowest branch
A panicle inflorescence morphology trait (TO:0000847) which is the length of the region between the panicle base to the lowest (the first) primary panicle branch.
Gramene:pankaj_jaiswal
TO:moorel
A peduncle morphology trait (TO:0000776) which is the diameter at the tip of the peduncle (PO:0009053).
PATO:0001334
TO_GIT:88
plant_trait_ontology
PDTDIA (related)
TO:0000546
Refers to the diameter ((PATO:0001334): A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary) of the tip of a peduncle (PO:0009053).
peduncle top diameter
A peduncle morphology trait (TO:0000776) which is the diameter at the tip of the peduncle (PO:0009053).
Gramene:pankaj_jaiswal
PO:0009053
TO:cooperl
A primary branch of inflorescence (TO:0000052) trait which is the number of primary branches present in the inflorescence (PO:0009049).
number of second order inflorescence axes (exact)
plant_trait_ontology
NPB (related)
PBRNB (related)
PRB (related)
number of primary rachis branches (related)
panicle primary branch number (related)
primary branches per panicle (related)
TO:0000547
primary branch number
A primary branch of inflorescence (TO:0000052) trait which is the number of primary branches present in the inflorescence (PO:0009049).
Gramene:pankaj_jaiswal
PO:0009049
TO:moorel
A shoot system morphology trait (TO:0000077) which is the number of rhizomes present in a shoot system (PO:0009006).
plant_trait_ontology
RHZNB (related)
rhizome number per plant (related)
TO:0000548
rhizome number
A shoot system morphology trait (TO:0000077) which is the number of rhizomes present in a shoot system (PO:0009006).
Gramene:pankaj_jaiswal
TO:cooperl
A shoot axis morphology trait (TO:0000739) which is a quality of a rhizome (PO:0004542).
plant_trait_ontology
TO:0000549
rhizome morphology trait
A shoot axis morphology trait (TO:0000739) which is a quality of a rhizome (PO:0004542).
Gramene:pankaj_jaiswal
TO:cooperl
A rhizome morphology trait (TO:0000549) which is the angle of a branch (PO:0025073) on a rhizome (PO:0004542) .
plant_trait_ontology
RHZBRAG (related)
rhizome branching degree (related)
TO:0000550
rhizome branch angle
A rhizome morphology trait (TO:0000549) which is the angle of a branch (PO:0025073) on a rhizome (PO:0004542) .
Gramene:pankaj_jaiswal
TO:cooperl
A rhizome morphology trait (TO:0000549) which is the number of branches (PO:0025073) on a rhizome (PO:0004542).
plant_trait_ontology
RHZBRNB (related)
rhizome branching number per plant (related)
TO:0000551
rhizome branch number
A rhizome morphology trait (TO:0000549) which is the number of branches (PO:0025073) on a rhizome (PO:0004542).
Gramene:pankaj_jaiswal
TO:cooperl
The dry weight of the shoot without inflorescence.
plant_trait_ontology
SHDWT (related)
total shoot dry weight (related)
TO:0000552
shoot dry weight
The dry weight of the shoot without inflorescence.
Gramene:pankaj_jaiswal37
A rhizome morphology trait (TO:0000549) which is the length of a rhizome (PO:0004542).
plant_trait_ontology
RHZLG (related)
average rhizome length (related)
TO:0000553
rhizome length
A rhizome morphology trait (TO:0000549) which is the length of a rhizome (PO:0004542).
Gramene:pankaj_jaiswal
TO:cooperl
A rhizome morphology trait (TO:0000549) which is the length of a rhizome internode (PO:0025204).
plant_trait_ontology
RHZINLG (related)
average rhizome internode length (related)
TO:0000554
rhizome internode length
A rhizome morphology trait (TO:0000549) which is the length of a rhizome internode (PO:0025204).
Gramene:pankaj_jaiswal
TO:cooperl
A rhizome morphology trait (TO:0000549) which is the number of rhizome internodes (PO:0025204).
plant_trait_ontology
RHZINNB (related)
average rhizome internode number (related)
TO:0000555
rhizome internode number
A rhizome morphology trait (TO:0000549) which is the number of rhizome internodes (PO:0025204).
Gramene:pankaj_jaiswal
TO:cooperl
A rhizome morphology trait (TO:0000549) which is the dry weight of a rhizome (PO:0004542).
plant_trait_ontology
RHZDWT (related)
rhizome dry weight per plant (related)
TO:0000556
rhizome dry weight
A rhizome morphology trait (TO:0000549) which is the dry weight of a rhizome (PO:0004542).
TO:cooperl
A secondary branching of inflorescence (TO:0000142) trait which is the number of secondary branches in an inflorescence (PO:0009049).
number of third order inflorescence axes (exact)
plant_trait_ontology
SBRNB (related)
secondary branches per panicle (related)
TO:0000557
secondary branch number
A secondary branching of inflorescence (TO:0000142) trait which is the number of secondary branches in an inflorescence (PO:0009049).
Gramene:pankaj_jaiswal
PO:0009049
TO:moorel
Number of small sized vascular bundles present in a plant part.
plant_trait_ontology
SVBNB (related)
TO:0000558
small vascular bundle number
Number of small sized vascular bundles present in a plant part.
Gramene:pankaj_jaiswal
Space occupied by the plant.
plant_trait_ontology
SP (related)
space (related)
TO:0000559
plant volume
Space occupied by the plant.
Gramene:pankaj_jaiswal
Space occupied by each culm or the tiller in a plant.
plant_trait_ontology
SPPCULM (related)
tiller volume (related)
TO:0000560
space per culm
Space occupied by each culm or the tiller in a plant.
Gramene:pankaj_jaiswal
A ratio of total space or volume occupied by the whole plant to the total number of culms or tiller in the plant.
plant_trait_ontology
SPCULMRO (related)
TO:0000561
space to culm ratio
A ratio of total space or volume occupied by the whole plant to the total number of culms or tiller in the plant.
Gramene:pankaj_jaiswal
A leaf area trait (TO:0000540) that is the ratio of the leaf area (TO:0000540) to the leaf dry weight (TO:0001014) or leaf dry mass (TO:New).
MaizeGDB_QTL:247869
TO_GIT:271
plant_trait_ontology
SLA (related)
SLFAR (related)
leaf specific area (related)
TO:0000562
specific leaf area
A leaf area trait (TO:0000540) that is the ratio of the leaf area (TO:0000540) to the leaf dry weight (TO:0001014) or leaf dry mass (TO:New).
TO:cooperl
A spikelet morphology trait (TO:0000657) which is the ratio of length to the width of a spikelet (PO:0009051).
PATO:0000122
PATO:0000921
plant_trait_ontology
SPKLGWDRO (related)
TO:0000563
Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite.
spikelet length to width ratio
A spikelet morphology trait (TO:0000657) which is the ratio of length to the width of a spikelet (PO:0009051).
Gramene:pankaj_jaiswal
PO:0009051
TO:moorel
A spikelet morphology trait (TO:0000657) which is the width of the spikelets (PO:0009051) present in a grass inflorescence.
PATO:0000921
plant_trait_ontology
SPKWD (related)
TO:0000564
Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite.
spikelet width
A spikelet morphology trait (TO:0000657) which is the width of the spikelets (PO:0009051) present in a grass inflorescence.
Gramene:pankaj_jaiswal
PO:0009051
TO:moorel
Number of spikelets present in the rice panicle per unit length.
plant_trait_ontology
SPKPPNLG (related)
number of spikelets per cm panicle length (related)
spikelet number per panicle length (related)
TO:0000565
spikelets per panicle length
Number of spikelets present in the rice panicle per unit length.
Gramene:pankaj_jaiswal
A vascular leaf morphology trait (TO:0000419) which is the number of leaf stomatal complexes (PO:0025183) present on the leaf surface.
plant_trait_ontology
STOFQ (related)
TO:0000566
leaf stomatal complex frequency
A vascular leaf morphology trait (TO:0000419) which is the number of leaf stomatal complexes (PO:0025183) present on the leaf surface.
Gramene:pankaj_jaiswal
plant_trait_ontology
TIAG (related)
TO:0000567
tiller angle
Weight of the shoot without inflorescence.
plant_trait_ontology
SHWT (related)
total shoot weight (related)
TO:0000568
shoot axis weight
Weight of the shoot without inflorescence.
Gramene:pankaj_jaiswal37
plant_trait_ontology
WBPH egg mortality (related)
WBPHOVI (related)
TO:0000569
white-backed planthopper egg mortality
plant_trait_ontology
WLPCENT (related)
percentage of watery lesion (related)
TO:0000570
watery lesion percentage
Fresh weight of the shoot without inflorescence.
plant_trait_ontology
SHFWT (related)
total shoot fresh weight (related)
TO:0000571
shoot fresh weight
Fresh weight of the shoot without inflorescence.
Gramene:pankaj_jaiswal37
A petal morphology trait (TO:0000863) which is the color of a petal (PO:0009032).
PATO:0000014
plant_trait_ontology
TO:0000572
Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts.
petal color
A petal morphology trait (TO:0000863) which is the color of a petal (PO:0009032).
Gramene:pankaj_jaiswal
PO:0009032
TO:moorel
A sepal morphology trait (TO:0000864) which is the color of a sepal (PO:0009031) in a flower (PO:0009049).
PATO:0000014
plant_trait_ontology
TO:0000573
Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts.
sepal color
A sepal morphology trait (TO:0000864) which is the color of a sepal (PO:0009031) in a flower (PO:0009049).
Gramene:pankaj_jaiswal
PO:0009031
PO:0009049
TO:moorel
A tepal morphology trait (TO:0000865) which is the color of a tepal (PO:0009033).
PATO:0000014
plant_trait_ontology
TO:0000574
Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts.
tepal color
A tepal morphology trait (TO:0000865) which is the color of a tepal (PO:0009033).
Gramene:pankaj_jaiswal
PO:0009033
TO:moorel
A portion of plant tissue morphology trait (TO:0000843) which is a quality of an endosperm (PO:0009089).
TO_GIT:133
plant_trait_ontology
TO:0000575
endosperm morphology trait
A portion of plant tissue morphology trait (TO:0000843) which is a quality of an endosperm (PO:0009089).
PO:0009089
TO:moorel
A stem morphology trait (TO:0000361) which is the length of the stem (PO:0009047).
TO:0000309
PATO:0000122
TO_GIT:157
core length (narrow)
plant_trait_ontology
CULMLG (related)
CmL (related)
STEMLG (related)
culm height (related)
culm length (related)
stem height (related)
TO:0000576
Often measured from soil surface to highest point on stem.
Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
stem length
A stem morphology trait (TO:0000361) which is the length of the stem (PO:0009047).
Gramene:pankaj_jaiswal37
PO:0009047
TO:moorel
A stem morphology trait (TO:0000361) which is the angle of a stem (PO:0009047).
PATO:0002326
plant_trait_ontology
STEMAG (related)
TO:0000577
Refer to angle (PATO:0002326): An orientation inhering in a bearer by virtue of the bearer's placement at an angle.
stem angle
A stem morphology trait (TO:0000361) which is the angle of a stem (PO:0009047).
Gramene:pankaj_jaiswal
PO:0009047
TO:moorel
The average fresh weight of the root determined in a study.
plant_trait_ontology
RTFWT (related)
total root fresh weight (related)
TO:0000578
root fresh weight
The average fresh weight of the root determined in a study.
Gramene:pankaj_jaiswal37
The trait is an indirect measure of the balance between water absorption and transpiration.
plant_trait_ontology
RTDWTTINBRO (related)
deep root dry weight to tiller number ratio (related)
TO:0000579
root dry weight to tiller number ratio
The trait is an indirect measure of the balance between water absorption and transpiration.
Gramene:pankaj_jaiswal37
plant_trait_ontology
TO:0000580
cytoplasmic male sterility
An inflorescence morphology trait (TO:0000373) which is the color of an inflorescence (PO:0009049).
PATO:0000014
TO_GIT:92
TO_GIT:97
head color (narrow)
plant_trait_ontology
TO:0000581
Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts.
inflorescence color
An inflorescence morphology trait (TO:0000373) which is the color of an inflorescence (PO:0009049).
Gramene:pankaj_jaiswal
PO:0009049
TO:cooperl
A reproductive shoot system morphology trait (TO:0000786) which is the number of inflorescences (PO:0009049).
PATO:0001555
TO_GIT:97
plant_trait_ontology
INFLONB (related)
TO:0000582
Refer to number of (PATO:0001555): The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts.
inflorescence number
A reproductive shoot system morphology trait (TO:0000786) which is the number of inflorescences (PO:0009049).
Gramene:pankaj_jaiswal
PO:0009049
TO:cooperl
TO:moorel
An infructescence morphology trait (TO:0000920) that is the average weight (mass) of an infructescence bearing mature fruit (PO:0009001).
TO_GIT:244
plant_trait_ontology
TO:0000583
Refers to mass (PATO:0000125): A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter.
infructescence weight
An infructescence morphology trait (TO:0000920) that is the average weight (mass) of an infructescence bearing mature fruit (PO:0009001).
Gramene:pankaj_jaiswal
TO:cooperl
true
true
A root length (TO:0000227) that is the length of one or more seminal roots (PO:0000046).
PATO:0000122
TO_GIT:365
plant_trait_ontology
TO:0000586
Seminal root is the primary root originating in a plant after germination.
Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
seminal root length
A root length (TO:0000227) that is the length of one or more seminal roots (PO:0000046).
Gramene:pankaj_jaiswal37
TO:austin_meier
TO:seymour_megan
A seed quality trait (TO:0000931) which is the quality of the endosperm (PO:0009089) texture, content, composition, size, etc.
TO:0000150
plant_trait_ontology
End (related)
endosperm quality (sensu Poaceae) (related)
TO:0000587
endosperm quality
A seed quality trait (TO:0000931) which is the quality of the endosperm (PO:0009089) texture, content, composition, size, etc.
Gramene:pankaj_jaiswal
PO:0009089
true
A grain weight (TO:0000919) which is the average weight of a grain (caryopsis fruit; PO:0030104), including the caryopsis hull (PO:0006000).
TO:0000509
TO_GIT:245
plant_trait_ontology
TO:0000589
The average grain weight (TO:0000589) can be used to calculate the overall yield or produce from a field.
average grain weight
A grain weight (TO:0000919) which is the average weight of a grain (caryopsis fruit; PO:0030104), including the caryopsis hull (PO:0006000).
Gramene:pankaj_jaiswal
TO:cooperl
A grain weight (TO:0000919) which is the weight a dehulled grain (caryopsis fruit; PO:0030104).
GRWT (broad)
TO_GIT:242
plant_trait_ontology
DHULGRWT (related)
TO:0000590
Dehulling is the process of removing the caryopsis hull (PO:0006000), which consists of a dried lemma (PO:0009037) and a dried palea (PO:0009037).
dehulled grain weight
A grain weight (TO:0000919) which is the weight a dehulled grain (caryopsis fruit; PO:0030104).
Gramene:pankaj_jaiswal
TO:cooperl
A dehulled grain weight (TO:0000590) which is the weight of a sample of 100 dehulled grains (caryopsis fruit; PO:0030104).
HDGRWT (broad)
hundred grain weight (broad)
HDHULGRWT (exact)
hundred dehulled grain weight (exact)
plant_trait_ontology
TO:0000591
100-dehulled grain weight
A dehulled grain weight (TO:0000590) which is the weight of a sample of 100 dehulled grains (caryopsis fruit; PO:0030104).
Gramene:pankaj_jaiswal
TO:cooperl
A dehulled grain weight (TO:0000590) which is the weight of a sample of 1000 dehulled grains (caryopsis fruit; PO:0030104) .
thousand grain weight (broad)
TDHULGRWT (exact)
thousand dehulled grain weight (exact)
plant_trait_ontology
TDGRWT (related)
TO:0000592
1000-dehulled grain weight
A dehulled grain weight (TO:0000590) which is the weight of a sample of 1000 dehulled grains (caryopsis fruit; PO:0030104) .
Gramene:pankaj_jaiswal
TO:cooperl
A grain weight (TO:0000919) which is the weight of a polished grain (caryopsis fruit; PO:0030104).
PLSGRWT (exact)
plant_trait_ontology
TO:0000593
Polishing removes the bran, which consists of aleurone layer (PO:0005360), pericarp; (PO:0009084) and the germ (plant embryo; PO:0009009). In rice, this is what is referred to as 'white rice'.
polished grain weight
A grain weight (TO:0000919) which is the weight of a polished grain (caryopsis fruit; PO:0030104).
Gramene:pankaj_jaiswal
TO:cooperl
A polished grain weight (TO:0000593) which is the weight of a sample of 100 polished grains.
HPLSGRWT (exact)
hundred polished grain weight (exact)
plant_trait_ontology
TO:0000594
100-polished grain weight
A polished grain weight (TO:0000593) which is the weight of a sample of 100 polished grains.
Gramene:pankaj_jaiswal
TO:cooperl
A polished grain weight (TO:0000593) which is the weight of a sample of 1000 polished grains.
TPLSGRWT (exact)
thousand polished grain weight (exact)
plant_trait_ontology
TO:0000595
1000-polished grain weight
A polished grain weight (TO:0000593) which is the weight of a sample of 1000 polished grains.
Gramene:pankaj_jaiswal
TO:cooperl
OBSOLETE.
plant_trait_ontology
TO:0000596
OBSOLETE plant volume (sensu Poaceae)
true
A plant trait (TO:0000387) that contributes to the overall utility, nutritional, or economic value of a plant, plant structure (PO:0009011) or plant product
jaiswalp
TO_GIT:260
plant_trait_ontology
TO:0000597
Quality traits of a plant, plant structure or plant product vary from crop production to food consumption factors and may include organoleptic properties (flavor, aroma, appearance, texture, etc), storability, processing qualities and nutritional aspects. Market quality standards for crops are based on complex interaction of social, economic and biological factors and are highly crop-specific (Acquaah, 2012).
Plant traits from other upper level classes may contribute to (as part_of children) to specific plant quality traits.
plant quality trait
A plant trait (TO:0000387) that contributes to the overall utility, nutritional, or economic value of a plant, plant structure (PO:0009011) or plant product
Gramene:pankaj_jaiswal
ISBN:9781118313718
TO:cooperl
The total protein content measured in a plant or a plant part.
plant_trait_ontology
PROTCN (related)
total protein content (related)
TO:0000598
protein content
The total protein content measured in a plant or a plant part.
Gramene:pankaj_jaiswal37
A biochemical trait which is a quality of an enzymatic reaction.
TO_GIT:380
plant_trait_ontology
enzymatic activity (related)
enzyme catalytic activity (related)
TO:0000599
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
enzyme activity trait
A biochemical trait which is a quality of an enzymatic reaction.
TO:cooperl
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0003824
Response shown by the plant in the presence of UV-A light stress.
plant_trait_ontology
UV-A resistance (related)
UVARS (related)
Ultraviolet-A light sensitivity (related)
Ultraviolet-A resistance (related)
TO:0000600
UV-A light sensitivity
Response shown by the plant in the presence of UV-A light stress.
Gramene:pankaj_jaiswal
Response shown by the plant in the presence of UV-B light stress.
plant_trait_ontology
UV-B resistance (related)
UVBRS (related)
Ultraviolet-A light sensitivity (related)
Ultraviolet-B resistance (related)
TO:0000601
UV-B light sensitivity
Response shown by the plant in the presence of UV-B light stress.
Gramene:pankaj_jaiswal
The total fat or lipid content of present in the plant or the plant part such as seed.
plant_trait_ontology
FATCN (related)
lipid content (related)
TO:0000602
total fat content
The total fat or lipid content of present in the plant or the plant part such as seed.
Gramene:pankaj_jaiswal
The ratio of total magnesium to potassium ion content measured in a plant or a plant part.
plant_trait_ontology
MGKCNRO (related)
Magnesium to potassium ratio (related)
ratio of magnesium to potassium (related)
TO:0000603
magnesium to potassium content ratio
The ratio of total magnesium to potassium ion content measured in a plant or a plant part.
Gramene:pankaj_jaiswal
Measures the fat and essential oil content in a plant or plant part.
plant_trait_ontology
TO:0000604
fat and essential oil content
Measures the fat and essential oil content in a plant or plant part.
Gramene:pankaj_jaiswal
An assay to determine the content of hydrogen peroxide or the peroxide reactive ions.
plant_trait_ontology
H2O2 content (related)
H2O2CN (related)
TO:0000605
hydrogen peroxide content
An assay to determine the content of hydrogen peroxide or the peroxide reactive ions.
Gramene:pankaj_jaiswal
An assay to determine the joint action of alpha-amylase, beta-amylase and any other carbohydrate-degrading enzymes.
plant_trait_ontology
DIASPWR (related)
TO:0000606
diastatic power
An assay to determine the joint action of alpha-amylase, beta-amylase and any other carbohydrate-degrading enzymes.
GR_REF:8025
The total mineral or ion content measured after drying and burning the plant or a plant part.
plant_trait_ontology
TO:0000607
ash content
The total mineral or ion content measured after drying and burning the plant or a plant part.
Gramene:pankaj_jaiswal
A mineral and ion content trait (TO:0000465) which is the sodium cation (CHEBI:29101) composition in a plant structure (PO:0009011).
plant_trait_ontology
TO:0000608
sodium content
A mineral and ion content trait (TO:0000465) which is the sodium cation (CHEBI:29101) composition in a plant structure (PO:0009011).
Gramene:pankaj_jaiswal
TO:cooperl
A mineral and ion content trait (TO:0000465) which is the potassium cation (CHEBI:29103) composition in a plant structure (PO:0009011).
plant_trait_ontology
TO:0000609
potassium content
A mineral and ion content trait (TO:0000465) which is the potassium cation (CHEBI:29103) composition in a plant structure (PO:0009011).
Gramene:pankaj_jaiswal
TO:cooperl
The ratio of soluble protein to total protein content is a measure of the degree of proteolysis.
plant_trait_ontology
STPROTRO (related)
Soluble protein to total protein content ratio (related)
TO:0000610
As seen in degree of modification of grain to malt in barley.
soluble to total protein ratio
The ratio of soluble protein to total protein content is a measure of the degree of proteolysis.
GR_REF:8025
It is a measure of the sugars and nitrogenous compounds available for yeast nutrition.
plant_trait_ontology
MALTEXTPCENT (related)
malt-extract percent (related)
TO:0000611
malt-extract percentage
It is a measure of the sugars and nitrogenous compounds available for yeast nutrition.
GR_REF:8025
A caryopsis fruit morphology trait (TO:0001079) which is a measure of the density or weight per unit of volume of a grain at a standardized moisture level.
TO_GIT:262
plant_trait_ontology
SDDN (related)
test weight (related)
TO:0000612
grain density
A caryopsis fruit morphology trait (TO:0001079) which is a measure of the density or weight per unit of volume of a grain at a standardized moisture level.
GR_REF:8025
TO:cooperl
It is defined as the amount of hull-less kernels obtained after de-hulling, expressed as a percentage of the weight of the sample.
plant_trait_ontology
GROATPCENT (related)
caryopsis percentage (related)
groat proportion (related)
hull percentage (related)
TO:0000613
This trait is most commonly used in determining the milling quality of Oat.
groat percentage
It is defined as the amount of hull-less kernels obtained after de-hulling, expressed as a percentage of the weight of the sample.
GR_REF:8025
A lemma morphology trait (TO:1000023) which is the shape of the lemma (PO:0009037).
TO_GIT:390
plant_trait_ontology
TO:0000614
Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
lemma shape
true
true
true
A lemma morphology trait (TO:1000023) which is the shape of the lemma (PO:0009037).
Gramene:pankaj_jaiswal
PATO:0000052
PO:0009037
TO:cooperl
TO:moorel
Response with respect to application of abscisic acid.
plant_trait_ontology
ABA response (related)
ABASN (related)
abscisic acid response (related)
TO:0000615
abscisic acid sensitivity
Response with respect to application of abscisic acid.
Gramene:pankaj_jaiswal
It is a measure of the total length covered by the leaf margin.
plant_trait_ontology
LFCIRCUM (related)
leaf circumference (related)
TO:0000616
leaf perimeter
It is a measure of the total length covered by the leaf margin.
Gramene:pankaj_jaiswal
A grain color (TO:0002617) trait which is the percentage of colored grains.
percentage of damaged yellow rice grains (narrow)
percentage of green rice grains (narrow)
percentage of red rice grains (narrow)
plant_trait_ontology
TO:0000617
The measurement is on de-hulled grains in comparison to a reference color.
colored grain percentage
A grain color (TO:0002617) trait which is the percentage of colored grains.
Gramene:pankaj_jaiswal
TO:cooperl
The measurement is on de-hulled grains in comparison to a reference color.
TO:cooperl
The percentage of cracked dehulled grain with at least one fourth of the size still intact.
plant_trait_ontology
CRUSHDHULGRPCENT (related)
CRUSHGRPCENT (related)
cracked dehulled-grain percentage (related)
cracked grain percentage (related)
crushed dehulled-grain percentage (related)
percent broken (related)
percentage brokens (related)
TO:0000618
crushed grain percentage
The percentage of cracked dehulled grain with at least one fourth of the size still intact.
Gramene:pankaj_jaiswal
A phenomenon associated to the seeds that germinate before becoming detached or harvested from the parent plant. Thus the germination occurs before the seed undergoes dormancy.
plant_trait_ontology
preharvest germination (related)
TO:0000619
vivipary
A phenomenon associated to the seeds that germinate before becoming detached or harvested from the parent plant. Thus the germination occurs before the seed undergoes dormancy.
Gramene:pankaj_jaiswal
A whole plant growth and development trait (TO:0000947) that is a quality of a plant embryo development stage (PO:0007631).
TO_GIT:299
plant_trait_ontology
TO:0000620
plant embryo development trait
A whole plant growth and development trait (TO:0000947) that is a quality of a plant embryo development stage (PO:0007631).
Gramene:pankaj_jaiswal
TO:cooperl
Traits associated with observing effects on the development of the inflorescence and its parts.
plant_trait_ontology
TO:0000621
inflorescence development trait
Traits associated with observing effects on the development of the inflorescence and its parts.
Gramene:pankaj_jaiswal
Traits associated with observing effects on the development of the flower and its parts.
plant_trait_ontology
floret development trait (related)
TO:0000622
flower development trait
Traits associated with observing effects on the development of the flower and its parts.
Gramene:pankaj_jaiswal
An inflorescence bristle length trait (TO:0000643) that is the length of the bristles found on an involucre (PO:0009100).
TO_GIT:153
plant_trait_ontology
INVLCBS (related)
bristle length (related)
sterile inflorescence branch length (related)
TO:0000623
involucre bristle length
An inflorescence bristle length trait (TO:0000643) that is the length of the bristles found on an involucre (PO:0009100).
Gramene:pankaj_jaiswal
TO:cooperl
This is an assay of any direct or indirect, harmful or beneficial effect of one plant on another through the production of chemical compounds (allelochemicals) that escape in the environment.
plant_trait_ontology
ALLELPATHEF (related)
TO:0000624
allelopathic effect
This is an assay of any direct or indirect, harmful or beneficial effect of one plant on another through the production of chemical compounds (allelochemicals) that escape in the environment.
Gramene:pankaj_jaiswal
A spikelet morphology trait (TO:0000657) which is the density of a spikelet (PO:0009051) in the inflorescence (PO:0009049) or on the given inflorescence branch (PO:0009081) order.
PATO:0001019
plant_trait_ontology
SPKDN (related)
TO:0000625
Refer to density (PATO:0001019): A physical quality which inheres in a bearer by virtue of some influence is exerted by the bearer's mass per unit size.
spikelet density
A spikelet morphology trait (TO:0000657) which is the density of a spikelet (PO:0009051) in the inflorescence (PO:0009049) or on the given inflorescence branch (PO:0009081) order.
Gramene:pankaj_jaiswal
PO:0009049
PO:0009051
PO:0009081
TO:moorel
plant_trait_ontology
RELPHOCONCSHRT (related)
TO:0000626
relative phosphorus distribution between shoot and root
plant_trait_ontology
RELPHOUTZEFY (related)
TO:0000627
relative phosphorus utilization efficiency
Causal agent: Sclerospora graminicola (Sacc. ) Schroet. It causes the downy mildew disease in Pearl millet.
plant_trait_ontology
Pg_DNMDRS (related)
TO:0000628
pearl millet downy mildew resistance
Causal agent: Sclerospora graminicola (Sacc. ) Schroet. It causes the downy mildew disease in Pearl millet.
Gramene:pankaj_jaiswal
It is determined as the number of days from the seed sowing to the stage when either the pollen shedding or anther exsertion occurs on the maize tassel.
days to tassel flowering (exact)
plant_trait_ontology
TO:0000629
Depends on the study type. For a study with multiple plants, on average 50% of the plants must have sheeding of pollen or anther exsertion.
days to tassel
It is determined as the number of days from the seed sowing to the stage when either the pollen shedding or anther exsertion occurs on the maize tassel.
Gramene:pankaj_jaiswal
Length of the pedicel.
plant_trait_ontology
PDCLG (related)
TO:0000630
pedicel length
Length of the pedicel.
Gramene:pankaj_jaiswal
plant_trait_ontology
GRNPTLDFQ (related)
TO:0000631
green plantlet differentiation frequency
plant_trait_ontology
GRNPTLYLDFQ (related)
TO:0000632
green plantlet yield frequency
plant_trait_ontology
RELTDWT (related)
TO:0000633
relative total dry weight
A stem morphology trait (TO:0000361) which is the number of stem nodes (PO:0020141).
plant_trait_ontology
NDNB (related)
TO:0000634
stem node number
A stem morphology trait (TO:0000361) which is the number of stem nodes (PO:0020141).
Gramene:pankaj_jaiswal
plant_trait_ontology
POPEXPVOL (related)
popcorn volume (related)
TO:0000635
popping expansion volume
plant_trait_ontology
RELSHDWT (related)
TO:0000636
relative shoot dry weight
true
An inflorescence width (TO:0000804) trait which is the width of a spike inflorescence (PO:0030117).
plant_trait_ontology
SPIKEWD (related)
TO:0000638
spike width
An inflorescence width (TO:0000804) trait which is the width of a spike inflorescence (PO:0030117).
TO:cooperl
plant_trait_ontology
SDFRT (related)
percent seed fertility (related)
TO:0000639
seed fertility
Total sum of number of roots in a plant derived per experiment.
plant_trait_ontology
TRTNB (related)
TO:0000640
total root number
Total sum of number of roots in a plant derived per experiment.
Gramene:pankaj_jaiswal
An inflorescence primary branch morphology trait (TO:0000846) which the length of a second order inflorescence axis (PO:0006321).
PATO:0000122
plant_trait_ontology
PBRLG (related)
TO:0000641
Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
inflorescence primary branch length
An inflorescence primary branch morphology trait (TO:0000846) which the length of a second order inflorescence axis (PO:0006321).
Gramene:pankaj_jaiswal
PO:0006321
TO:moorel
A leaf sheath morphology trait (TO:0000835) which is the measurement, in centimeters of the leaf sheath (PO:0020104) diameter.
PATO:0001334
plant_trait_ontology
LFSDIA (related)
TO:0000642
Refer to diameter (PATO:0001334): A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary.
leaf sheath diameter
A leaf sheath morphology trait (TO:0000835) which is the measurement, in centimeters of the leaf sheath (PO:0020104) diameter.
Gramene:pankaj_jaiswal
PO:0020104
TO:moorel
An inflorescence morphology trait (TO:0000050) that is the length of the bristles found on an inflorescence (PO:0009049).
TO_GIT:153
plant_trait_ontology
BRLG (related)
TO:0000643
inflorescence bristle length
An inflorescence morphology trait (TO:0000050) that is the length of the bristles found on an inflorescence (PO:0009049).
Gramene:pankaj_jaiswal
PO:0009049
TO:moorel
The relative (dry)weight of the root determined after a given treatment as compared to the one determined under normal conditions.
plant_trait_ontology
RELRTDWT (related)
TO:0000644
relative root dry weight
The relative (dry)weight of the root determined after a given treatment as compared to the one determined under normal conditions.
Gramene:pankaj_jaiswal
jaiswalp
plant_trait_ontology
RELPHOCONC (related)
TO:0000645
relative phosphorus concentration
plant_trait_ontology
CAUAXIBRNB (related)
TO:0000646
cauline axillary branch number
plant_trait_ontology
RELACIDPASEACT (related)
TO:0000647
relative acid phosphatase activity
plant_trait_ontology
RELPHOUP (related)
TO:0000648
relative phosphorus uptake
A peduncle morphology trait (TO:0000776) which is the width of a peduncle (PO:0025386).
PATO:0000921
TO_GIT:88
plant_trait_ontology
PDCWD (related)
TO:0000649
Refers to the width ((PATO:0000921):A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite) of a peduncle (PO:0009053).
peduncle width
A peduncle morphology trait (TO:0000776) which is the width of a peduncle (PO:0025386).
Gramene:pankaj_jaiswal
PO:0025386
TO:cooperl
A lemma morphology trait (TO:1000023) which is the length of the lemma (PO:0009037).
TO_GIT:390
plant_trait_ontology
LEMLG (related)
TO:0000650
Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points.
lemma length
true
true
true
A lemma morphology trait (TO:1000023) which is the length of the lemma (PO:0009037).
Gramene:pankaj_jaiswal
PATO:0000122
PO:0009037
TO:moorel
plant_trait_ontology
FLRCL (related)
TO:0000651
flour color
A leaf morphology trait (TO:0000748) which is the leaf surface area affected by abiotic stresses like insecticides and cold temperature as evidenced by chlorotic and/or necrotic tissue.
plant_trait_ontology
LFNEC (related)
leaf scorch (related)
TO:0000652
If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
leaf necrosis
A leaf morphology trait (TO:0000748) which is the leaf surface area affected by abiotic stresses like insecticides and cold temperature as evidenced by chlorotic and/or necrotic tissue.
Gramene:pankaj_jaiswal
TO:cooperl
A multi-tissue plant structure development trait (TO:0000927) that has as primary participant a seed (PO:0009010).
TO_GIT:254
plant_trait_ontology
TO:0000653
seed growth and development trait
A multi-tissue plant structure development trait (TO:0000927) that has as primary participant a seed (PO:0009010).
Gramene:pankaj_jaiswal
TO:cooperl
A plant structure growth and development trait (TO:0000928) that is a quality of the growth of the shoot system (PO:0009006), and shoot system development stages (PO:0025527).
TO_GIT:268
plant_trait_ontology
TO:0000654
shoot system growth and development trait
A plant structure growth and development trait (TO:0000928) that is a quality of the growth of the shoot system (PO:0009006), and shoot system development stages (PO:0025527).
Gramene:pankaj_jaiswal
TO:cooperl
A plant organ development trait (TO:0000927) that has as primary participant a leaf (PO:0025034).
jaiswalp
TO_GIT:253
plant_trait_ontology
TO:0000655
leaf growth and development trait
A plant organ development trait (TO:0000927) that has as primary participant a leaf (PO:0025034).
Gramene:pankaj_jaiswal
TO:cooperl
Traits associated with observing effects on the development of the root and its parts.
plant_trait_ontology
TO:0000656
root development trait
Traits associated with observing effects on the development of the root and its parts.
Gramene:pankaj_jaiswal
An inflorescence morphology trait (TO:0000373) which is a quality of a spikelet (PO:0009051).
TO_GIT:144
plant_trait_ontology
TO:0000657
spikelet morphology trait
An inflorescence morphology trait (TO:0000373) which is a quality of a spikelet (PO:0009051).
Gramene:pankaj_jaiswal
PO:0009051
TO:cooperl
TO:moorel
It is determined as the number of days from the seed sowing to the first visible silk (stigma) on the maize ear.
plant_trait_ontology
TO:0000658
Depends on the study type. For a study with multiple plants, on average 50% of the plants must have exposed silks.
days to silk
It is determined as the number of days from the seed sowing to the first visible silk (stigma) on the maize ear.
Gramene:pankaj_jaiswal
The time interval between the appearance of successive leaves (days/leaf) on the developing shoot.
plant_trait_ontology
TO:0000659
phyllochron
The time interval between the appearance of successive leaves (days/leaf) on the developing shoot.
Gramene:pankaj_jaiswal
plant_trait_ontology
TO:0000660
axillary bud dormancy
plant_trait_ontology
TO:0000661
tiller bud dormancy
Caused by Fusarium graminearum Schwabe, that affects the quality and yield of barley (Hordeum vulgare L.) grain.
plant_trait_ontology
Hv_FUSHEADBTRS (related)
TO:0000662
barley fusarium head blight resistance
Caused by Fusarium graminearum Schwabe, that affects the quality and yield of barley (Hordeum vulgare L.) grain.
Gramene:pankaj_jaiswal
Caused by Fusarium graminearum Schwabe (teleomorph: Gibberella zeae), in the USA and Canada. It causes severe yield and quality losses in wheat (Triticum aestivum L.).
TO_GIT:70
plant_trait_ontology
Ta_FUSHEADBTRS (related)
TO:0000663
wheat fusarium head blight resistance
Caused by Fusarium graminearum Schwabe (teleomorph: Gibberella zeae), in the USA and Canada. It causes severe yield and quality losses in wheat (Triticum aestivum L.).
Gramene:pankaj_jaiswal
plant_trait_ontology
TO:0000664
fungal blight disease resistance
Measurement of the whitish area found in the dehulled grain.
plant_trait_ontology
GRCARWHT (related)
TO:0000665
grain core area white
Measurement of the whitish area found in the dehulled grain.
Gramene:pankaj_jaiswal
plant_trait_ontology
BRWRYLD (related)
TO:0000666
brown rice yield
OBSOLETE: The quality trait of the seed or the products derived from it.
TO:0001069
TO:0001070
TO_GIT:108
plant_trait_ontology
TO:0000667
OBSOLETE cooking or brewing quality
true
OBSOLETE: The quality trait of the seed or the products derived from it.
Gramene:pankaj_jaiswal
Measuring amount of toxins found in the host plant after the infection by a fungal pathogen. The toxin is produced by the pathogen.
plant_trait_ontology
TO:0000668
mycotoxin content
Measuring amount of toxins found in the host plant after the infection by a fungal pathogen. The toxin is produced by the pathogen.
Gramene:pankaj_jaiswal
Measuring amount of mycotoxin deoxynivalenol found in the host plant after the infection by a fungus Fusarium sp.
plant_trait_ontology
DONCONC (related)
TO:0000669
deoxynivalenol content
Measuring amount of mycotoxin deoxynivalenol found in the host plant after the infection by a fungus Fusarium sp.
Gramene:pankaj_jaiswal
PMID:12897863
The number of flowers present on a inflorescence branch or in the inflorescence itself.
plant_trait_ontology
FLNB (related)
TO:0000670
floret number
The number of flowers present on a inflorescence branch or in the inflorescence itself.
Gramene:pankaj_jaiswal
plant_trait_ontology
PREFLFLRABR (related)
frequency of pre-flowering floret abortion (related)
pre-flowering floret abortion (related)
TO:0000671
pre-flowering flower abortion
plant_trait_ontology
BRAPCENT (related)
rice bran percentage (related)
TO:0000672
bran percentage
Caused by Fusarium graminearum Schwabe (telomorph: Gibberella zeae), in the USA and Canada. It causes severe yield and quality losses in wheat (Triticum turgidum).
plant_trait_ontology
Tt_FUSHEADBTRS (related)
tetraploid wheat fusarium head blight disease resistance (related)
TO:0000673
tetraploid wheat fusarium head blight resistance
Caused by Fusarium graminearum Schwabe (telomorph: Gibberella zeae), in the USA and Canada. It causes severe yield and quality losses in wheat (Triticum turgidum).
Gramene:pankaj_jaiswal
They are non-nutritive plant chemicals that have protective or disease preventive properties.
plant_trait_ontology
TO:0000674
phytochemical compound content
They are non-nutritive plant chemicals that have protective or disease preventive properties.
Gramene:pankaj_jaiswal
Amount of ferulic acid content determined in a given plant part. Ferulic acid is an antioxidant which neutralizes free radicals (superoxide, nitric oxide and hydroxyl radical) which could cause oxidative damage of cell membranes and DNA. Ferulic acid helps to prevent damage to the cells caused by ultraviolet light.
plant_trait_ontology
4-hydroxy-3-methoxycinnamic acid (related)
FERULICACIDCN (related)
TO:0000675
It is found in the leaves and seeds of many plants, but especially in cereals such as brown rice, whole wheat and oats.
ferulic acid content
Amount of ferulic acid content determined in a given plant part. Ferulic acid is an antioxidant which neutralizes free radicals (superoxide, nitric oxide and hydroxyl radical) which could cause oxidative damage of cell membranes and DNA. Ferulic acid helps to prevent damage to the cells caused by ultraviolet light.
Gramene:pankaj_jaiswal
Style color is determined from blooming flowers or florets.
plant_trait_ontology
STYCL (related)
color of silk (related)
color of style (related)
silk color (related)
TO:0000676
style color
Style color is determined from blooming flowers or florets.
Gramene:pankaj_jaiswal
A leaf position (TO:0000541) which is the position of the third leaf (PO:0025034) on a plant.
TO_GIT:226
plant_trait_ontology
3LFHT (related)
3rd leaf height (related)
third leaf height (related)
TO:0000677
Refers to: position (PATO_0000140): A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity.
third leaf position
A leaf position (TO:0000541) which is the position of the third leaf (PO:0025034) on a plant.
Gramene:pankaj_jaiswal
TO:cooperl
An infructescence axis morphology trait (TO:0000921) which is the diameter of a cob.
MaizeGDB_QTL:82753
PATO:0001334
TO_GIT:243
plant_trait_ontology
COBDIA (related)
cobd (related)
diameter of central spike of ear (related)
TO:0000678
The cob is the first order infructescence axis PO:0025244 of the ear infructescence (new). Refers to diameter (PATO:0001334): A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary. In maize, this is measured in centimeters.
cob diameter
An infructescence axis morphology trait (TO:0000921) which is the diameter of a cob.
TO:cooperl
cobd (related)
MaizeGDB_QTL:82753
true
An inflorescence morphology trait (TO:0000373) trait which is the circumference of an inflorescence (PO:0009049).
plant_trait_ontology
INFLOCIRCUM (related)
TO:0000680
inflorescence circumference
An inflorescence morphology trait (TO:0000373) trait which is the circumference of an inflorescence (PO:0009049).
TO:cooperl
An ear infructescence morphology trait (TO:0000976) that is the circumference of an ear infructescence (PO:0025597).
TO_GIT:132
ear infructescence circumference (exact)
plant_trait_ontology
EARCIRCUM (related)
TO:0000681
Refers to circumference (PATO:0001648): An 1-D extent quality which is equal to the length of the closed curve of a circle. Ear circumference (TO:0000681) is equal to ear diameter (TO:0000433) times 3.14.
ear circumference
An ear infructescence morphology trait (TO:0000976) that is the circumference of an ear infructescence (PO:0025597).
TO:cooperl
An inflorescence morphology trait (TO:0000373) which is the height of an inflorescence (PO:0009049) measured from ground to the attachment point.
PATO:0000119
TO_GIT:226
plant_trait_ontology
INFLOHT (related)
TO:0000682
Refer to height (PATO:0000119): A 1-D extent quality inhering in a bearer by virtue of the bearer's vertical dimension of extension.
inflorescence height
An inflorescence morphology trait (TO:0000373) which is the height of an inflorescence (PO:0009049) measured from ground to the attachment point.
Gramene:pankaj_jaiswal
PO:0009049
TO:moorel
An ear infructescence morphology trait (TO:0000976) which is the position of an ear infructescence (PO:0025597).
MaizeGDB_QTL:61369
TO_GIT:226
plant_trait_ontology
EARHT (related)
ear height (related)
TO:0000683
Refers to: position (PATO_0000140): A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity. In maize this is usually measured from the ground to the attachment point of the ear.
ear infructescence position
An ear infructescence morphology trait (TO:0000976) which is the position of an ear infructescence (PO:0025597).
Gramene:pankaj_jaiswal
TO:cooperl
TO:moorel
An assay to test for aroma and flavor reminiscent of freshly cut grass.
plant_trait_ontology
GRASSYFLVOR (related)
grassy flavour (related)
TO:0000684
grassy flavor
An assay to test for aroma and flavor reminiscent of freshly cut grass.
Gramene:pankaj_jaiswal
An assay for the soft and juicy texture.
plant_trait_ontology
FRTENDER (related)
TENDER (related)
TO:0000685
fruit tenderness
An assay for the soft and juicy texture.
Gramene:pankaj_jaiswal
An assay for a juicy appetizingness.
plant_trait_ontology
JUICE (related)
succulence (related)
TO:0000686
juiciness
An assay for a juicy appetizingness.
Gramene:pankaj_jaiswal
An infructescence morphology trait (TO:0000920) which is the number of rows of kernels per ear infructescence (PO:0025597).
MaizeGDB_QTL:99383
TO_GIT:286
plant_trait_ontology
KERROWNB (related)
kernel row number per ear (related)
TO:0000687
In maize, kernel row number is counted on the central, widest part of the uppermost ear infructescence. In comparing to teosinte "rank", kernel row number is divided by two.
kernel row number per ear
An infructescence morphology trait (TO:0000920) which is the number of rows of kernels per ear infructescence (PO:0025597).
TO:cooperl
A infructescence yield trait (TO:0000936) which is the length of a kernel row from base to where kernels end on the ear infructescence (PO:0025597).
TO_GIT:288
plant_trait_ontology
KERROWLG (related)
kernel set length (related)
TO:0000688
kernel row length
A infructescence yield trait (TO:0000936) which is the length of a kernel row from base to where kernels end on the ear infructescence (PO:0025597).
TO:cooperl
plant_trait_ontology
GRTENDER (related)
kernel tenderness (related)
TO:0000689
grain tenderness
Measures the maysin content in a plant or plant part.
plant_trait_ontology
MAYSINCN (related)
TO:0000690
Maysin is a coagulable globulin protein produced by the maize plant. It has insecticide properties.
maysin content
Measures the maysin content in a plant or plant part.
Gramene:pankaj_jaiswal
Causal agent: Setosphaeria turcica.
plant_trait_ontology
TO:0000691
Zea mays northern leaf blight disease resistance
Causal agent: Setosphaeria turcica.
Gramene:pankaj_jaiswal
plant_trait_ontology
NLFBTINCUBPD (related)
TO:0000692
NCLB incubation period
plant_trait_ontology
AUDPC (related)
NLFBTPROGCURV (related)
TO:0000693
NCLB area under disease progress curve
An assay of firmness and freshness of the fruit.
plant_trait_ontology
CRISP (related)
TO:0000694
fruit crispness
An assay of firmness and freshness of the fruit.
Gramene:pankaj_jaiswal
A leaf margin morphology trait (TO:0002635) which is the color of a leaf margin (PO:0020128).
PATO:0000014
plant_trait_ontology
LFMCL (related)
leaf margin pigmentation (related)
pigmentation of leaf margin (related)
TO:0000695
Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts.
leaf margin color
A leaf margin morphology trait (TO:0002635) which is the color of a leaf margin (PO:0020128).
PO:0020128
TO:moorel
Amount of starch present in the plant or plant part.
plant_trait_ontology
STARCHCN (related)
TO:0000696
starch content
Amount of starch present in the plant or plant part.
Gramene:pankaj_jaiswal
A yield trait (TO:0000371) which is the yield of starch from a plant structure (PO:0009011).
plant_trait_ontology
STARCHYLD (related)
TO:0000697
Starch yield can be assayed initially with a smaller sample, but later converted to associate with a large sample, for example, for starch yield in kilograms per hectare.
starch yield
A yield trait (TO:0000371) which is the yield of starch from a plant structure (PO:0009011).
Gramene:pankaj_jaiswal
TO:cooperl
plant_trait_ontology
STARCH (related)
mealiness (related)
TO:0000698
starchiness
Catalysis of the reaction: UDP-glucose + D-fructose = UDP + sucrose.
plant_trait_ontology
SUSACT (related)
TO:0000699
sucrose synthase activity trait
Catalysis of the reaction: UDP-glucose + D-fructose = UDP + sucrose.
GO:0016157
The quality of having the pleasant taste characteristic of sugar.
plant_trait_ontology
FRSWEET (related)
SWEET (related)
TO:0000700
fruit sweetness
The quality of having the pleasant taste characteristic of sugar.
Gramene:pankaj_jaiswal
The pressure within the cell resulting from the absorption of water into the vacuole and the imbibition of water by the protoplasm.
plant_trait_ontology
TURGPRES (related)
TO:0000701
turgor pressure
The pressure within the cell resulting from the absorption of water into the vacuole and the imbibition of water by the protoplasm.
Gramene:pankaj_jaiswal
Concentration of starch present in the plant or plant part.
plant_trait_ontology
STARCHCONC (related)
TO:0000702
starch concentration
Concentration of starch present in the plant or plant part.
Gramene:pankaj_jaiswal
An enzyme activity trait (TO:0000599) which is the quality of the hydrolysis of amylose or an amylose derivative by amylase.
plant_trait_ontology
TO:0000703
amylase activity trait
An enzyme activity trait (TO:0000599) which is the quality of the hydrolysis of amylose or an amylose derivative by amylase.
Gramene:pankaj_jaiswal
Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate.
plant_trait_ontology
phosphoric monoester hydrolase activity (related)
TO:0000704
phosphatase activity trait
Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate.
GO:0016791
Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate.
plant_trait_ontology
ACIDPASEACT (related)
TO:0000705
acid phosphatase activity trait
Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate.
EC:3.1.3.2
GO:0003993
A collective phyllome structure morphology trait (TO:0000845) that is the color of a caryopsis hull (PO:0006000).
plant_trait_ontology
HULCL (related)
TO:0000706
A caryopsis hull (PO:0006000) is the dry outer covering of a caryopsis fruit (PO:0030104; grain). The caryopsis hull is comprised of a dry lemma and palea, which enclose a spiklet floret (PO:0009082).
hull color
A collective phyllome structure morphology trait (TO:0000845) that is the color of a caryopsis hull (PO:0006000).
Gramene:pankaj_jaiswal
TO:cooperl
A pericarp morphology trait (TO:0000945) that is the color of the pericarp (PO:0009084).
PATO:0000014
TO_GIT:292
plant_trait_ontology
DHULGRCL (related)
PERICARPCL (related)
bran color (related)
dehulled grain color (related)
grain color (related)
TO:0000707
Pericarp is the wall of a fruit, developed from the ovary or carpel wall. Also scored for grain color or color of the dehulled grain in grasses.
pericarp color
A pericarp morphology trait (TO:0000945) that is the color of the pericarp (PO:0009084).
Gramene:pankaj_jaiswal
TO:cooperl
A whole plant morphology trait (TO:0000398) which is the color of a whole plant (PO:0000003).
PATO:0000014
TO_GIT:367
TO_GIT:85
plant_trait_ontology
TO:0000708
plant color
A whole plant morphology trait (TO:0000398) which is the color of a whole plant (PO:0000003).
Gramene:pankaj_jaiswal
PO:0000003
TO:cooperl
A leaf morphology trait (TO:0000748) which is the appearance of glossiness of the leaf surface. Contributed by change in either the amount or content of cuticle wax (PO:0025386) on a leaf (PO:0025034).
plant_trait_ontology
TO:0000709
If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
leaf gloss
A leaf morphology trait (TO:0000748) which is the appearance of glossiness of the leaf surface. Contributed by change in either the amount or content of cuticle wax (PO:0025386) on a leaf (PO:0025034).
Gramene:pankaj_jaiswal
Assay to detrmine the amount of globulin proteins.
plant_trait_ontology
TO:0000710
Globulin proteins also called globular proteins, or spheroproteins are one of the main protein classes. These have a globelike protein structure, that is more or less soluble in aqueous solutions. The two major sub classes are alpha and beta globulins.
globulin protein content
Assay to detrmine the amount of globulin proteins.
Gramene:pankaj_jaiswal
An assay to determine the tolerance exhibited by a plant or a group of plants (population) towards the applied herbicide imidazolinone.
PECO:0007633
plant_trait_ontology
TO:0000711
It is expected that the herbicide application must not affect the agronomic yield, if any.
imidazolinone sensitivity
An assay to determine the tolerance exhibited by a plant or a group of plants (population) towards the applied herbicide imidazolinone.
Gramene:pankaj_jaiswal
An assay to determine the tolerance exhibited by a plant or a group of plants (population) towards the applied herbicide sulfonylurea.
plant_trait_ontology
TO:0000712
It is expected that the herbicide application must not affect the agronomic yield, if any.
sulfonylurea herbicide sensitivity
An assay to determine the tolerance exhibited by a plant or a group of plants (population) towards the applied herbicide sulfonylurea.
Gramene:pankaj_jaiswal
An endosperm morphology trait (TO:0000575) which is a brittle endosperm (PO:0009089).
TO_GIT:133
plant_trait_ontology
TO:0000713
brittle endosperm
An endosperm morphology trait (TO:0000575) which is a brittle endosperm (PO:0009089).
PO:0009089
TO:moorel
Absence of seminal roots in the plant.
plant_trait_ontology
absence of seminal roots (related)
TO:0000714
seminal rootless
Absence of seminal roots in the plant.
Gramene:pankaj_jaiswal
In maize ears, the floral meristems undergo repeated dichotomous branching, resulting in fascicled (highly branched and bundled or clustered) ears.
plant_trait_ontology
TO:0000715
fascicled ear
In maize ears, the floral meristems undergo repeated dichotomous branching, resulting in fascicled (highly branched and bundled or clustered) ears.
Gramene:pankaj_jaiswal
An endosperm morphology trait (TO:0000575) which is an etched endosperm (PO:0009089).
TO_GIT:133
plant_trait_ontology
TO:0000716
This is also an endosperm quality trait (TO:0000587).
etched endosperm
An endosperm morphology trait (TO:0000575) which is an etched endosperm (PO:0009089).
PO:0009089
TO:moorel
An endosperm morphology trait (TO:0000575) which is a rough endosperm (PO:0009089).
PATO:0000700
TO_GIT:133
plant_trait_ontology
TO:0000717
This is also an endosperm quality trait (TO:0000587). Refers to rough PATO:0000700 A texture quality inhering in a bearer by virtue of the bearer's irregular surface.
rough endosperm
An endosperm morphology trait (TO:0000575) which is a rough endosperm (PO:0009089).
PO:0009089
TO:moorel
A grain quality trait (TO:0000162) where the grain (caryopsis fruit; PO:0030104) has a wrinkled appearance, usually from a lack of starch accumulation.
wrinkled kernel (narrow)
plant_trait_ontology
wrinkled seed (related)
TO:0000718
wrinkled grain
A grain quality trait (TO:0000162) where the grain (caryopsis fruit; PO:0030104) has a wrinkled appearance, usually from a lack of starch accumulation.
TO:cooperl
A leaf vein morphology trait (TO:0000820) which is the color of a leaf lamina vein (PO:0020138).
PATO:0000014
plant_trait_ontology
TO:0000719
Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts.
leaf vein color
A leaf vein morphology trait (TO:0000820) which is the color of a leaf lamina vein (PO:0020138).
PO:0020138
TO:moorel
A leaf midvein morphology trait (TO:0000822) which is the color of the leaf midvein (PO:0020139).
leaf midvein color (exact)
plant_trait_ontology
TO:0000720
leaf midrib color
A leaf midvein morphology trait (TO:0000822) which is the color of the leaf midvein (PO:0020139).
TO:cooperl
A leaf morphology trait (TO:0000748) which is a tightly rolled leaf encasing the next emerging leaf (PO:0025034).
plant_trait_ontology
TO:0000721
If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
leaf adherence
A leaf morphology trait (TO:0000748) which is a tightly rolled leaf encasing the next emerging leaf (PO:0025034).
Gramene:pankaj_jaiswal
PO:0025034
TO:cooperl
Traits associated with observing effects on the sporocyte development.
plant_trait_ontology
TO:0000722
sporocyte development trait
Traits associated with observing effects on the sporocyte development.
Gramene:pankaj_jaiswal
Traits associated with observing effects on the microsporocyte development.
plant_trait_ontology
TO:0000723
microsporocyte development trait
Traits associated with observing effects on the microsporocyte development.
Gramene:pankaj_jaiswal
Traits associated with observing effects on the megasporocyte development.
plant_trait_ontology
TO:0000724
megasporocyte development trait
Traits associated with observing effects on the megasporocyte development.
Gramene:pankaj_jaiswal
A count of the number of megasporocyte that is done to determine any increase or decrease in number.
plant_trait_ontology
TO:0000725
megasporocyte number
A count of the number of megasporocyte that is done to determine any increase or decrease in number.
Gramene:pankaj_jaiswal
A count of the number of microsporocyte that is done to determine any increase or decrease in number.
plant_trait_ontology
TO:0000726
microsporocyte number
A count of the number of microsporocyte that is done to determine any increase or decrease in number.
Gramene:pankaj_jaiswal
The formation of spores.
plant_trait_ontology
TO:0000727
sporogenesis
The formation of spores.
Gramene:pankaj_jaiswal
The traits associated with various developmental landmarks and processes of cell division during either the meiotic cell cycle or mitotic cell cycle.
GO:0007049
plant_trait_ontology
cell division cycle (related)
TO:0000728
cell cycle trait
The traits associated with various developmental landmarks and processes of cell division during either the meiotic cell cycle or mitotic cell cycle.
R:pj
The traits associated with various developmental landmarks and processes of cell division during either the meiotic cell cycle.
GO:0051321
plant_trait_ontology
TO:0000729
Meiosis is a type of cell division in which haploid gametes and spores are formed. The process involves a single duplication of the genetic material followed by two mitotic divisions. As a result each daughter cell receives half the chromosomal content (haploid) as the parent cell.
meiotic cell cycle trait
The traits associated with various developmental landmarks and processes of cell division during either the meiotic cell cycle.
Gramene:pankaj_jaiswal
The traits associated with various developmental landmarks and processes of cell division during the mitotic cell cycle.
GO:0000278
plant_trait_ontology
TO:0000730
Mitosis is a type of cell division in which a cell duplicates its genetic information (DNA), in order to generate two, identical, daughter cells. Each daughter cell receives the same chromosome number / genetic content as the parent cell.
mitotic cell cycle trait
The traits associated with various developmental landmarks and processes of cell division during the mitotic cell cycle.
Gramene:pankaj_jaiswal
Measures the lignin content in a plant or plant part.
plant_trait_ontology
TO:0000731
lignin content
Measures the lignin content in a plant or plant part.
Gramene:pankaj_jaiswal
plant_trait_ontology
TO:0000732
lignin monomer content
Traits associated with the biosynthesis of lignin in a plant or plant part.
GO:0009809
plant_trait_ontology
lignin biosynthesis (related)
TO:0000733
lignin biosynthesis trait
Traits associated with the biosynthesis of lignin in a plant or plant part.
Gramene:pankaj_jaiswal
A caryopsis fruit morphology trait (TO:0001079) which is the length of a grain (caryopsis fruit; PO:0030104).
TO:0002760
PATO:0000122
GRLG (exact)
plant_trait_ontology
DHULGRLG (related)
KERLG (related)
kernel length (related)
length of dehulled grain (related)
length of grain without hull (related)
TO:0000734
Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
grain length
A caryopsis fruit morphology trait (TO:0001079) which is the length of a grain (caryopsis fruit; PO:0030104).
Gramene:pankaj_jaiswal
TO:moorel
The time between the initiation of two leaves on the shoot apical meristem is called a plastochron.
plant_trait_ontology
TO:0000735
plastochron
The time between the initiation of two leaves on the shoot apical meristem is called a plastochron.
Gramene:pankaj_jaiswal
A multi-tissue plant structure morphology trait (TO:0000836) which is a quality of a plant organ (PO:0009008).
moorel
2012-04-19T10:36:57Z
TO_GIT:55
plant_trait_ontology
TO:0000736
plant organ morphology trait
A multi-tissue plant structure morphology trait (TO:0000836) which is a quality of a plant organ (PO:0009008).
PO:0009008
TO:cooperl
A whole plant morphology trait (TO:0000398) that is a qualitative score of the visual appeal (ideotype) of the whole plant (PO:0000003).
moorel
2012-04-16T02:18:03Z
TO_GIT:53
plant_trait_ontology
TO:0000737
Includes visual scoring of plant characteristics such as plant height (TO:0000207), uniformity of plants, plant damage by diseases and insects and lodging incidence (TO:0000068).
plant aspect
A whole plant morphology trait (TO:0000398) that is a qualitative score of the visual appeal (ideotype) of the whole plant (PO:0000003).
TO:curators
A plant organ morphology trait (TO:0000736) which is a quality of a plant axis (PO:0025004).
moorel
2012-04-19T10:38:30Z
TO_GIT:55
plant_trait_ontology
TO:0000738
plant axis morphology trait
A plant organ morphology trait (TO:0000736) which is a quality of a plant axis (PO:0025004).
PO:0025004
TO:cooperl
A plant axis morphology trait (TO:0000738) which is a quality of a shoot axis (PO:0025029).
moorel
2012-04-19T10:40:33Z
TO_GIT:55
plant_trait_ontology
TO:0000739
shoot axis morphology trait
A plant axis morphology trait (TO:0000738) which is a quality of a shoot axis (PO:0025029).
PO:0025029
TO:cooperl
A shoot axis morphology trait (TO:0000739) which is a quality of a branch (PO:0025073).
moorel
2012-04-19T10:42:49Z
TO_GIT:56
plant_trait_ontology
TO:0000740
branch morphology trait
A shoot axis morphology trait (TO:0000739) which is a quality of a branch (PO:0025073).
PO:0025073
TO:cooperl
A plant axis morphology trait (TO:0000738) which is quality of a tuber (PO:0004543).
moorel
2012-04-19T10:45:11Z
TO_GIT:56
plant_trait_ontology
TO:0000741
tuber morphology trait
A plant axis morphology trait (TO:0000738) which is quality of a tuber (PO:0004543).
PO:0004543
TO:cooperl
A tuber morphology trait (TO:0000741) which is a quality of a subterranean shoot axis tuber (PO:0004547).
moorel
2012-04-19T10:46:10Z
TO_GIT:56
plant_trait_ontology
TO:0000742
A subterranean shoot axis tuber (PO:0004547) is found in plants such as yam (Dioscorea sp.) and potato (Solanum tuberosum).
subterranean shoot axis tuber morphology trait
A tuber morphology trait (TO:0000741) which is a quality of a subterranean shoot axis tuber (PO:0004547).
PO:0004547
TO:cooperl
A subterranean shoot axis tuber morphology trait (TO:0000742) which is the shape of a subterranean shoot axis tuber (PO:0004547).
moorel
2012-04-19T10:48:44Z
tuber shape (broad)
PATO:0000052
TO_GIT:56
plant_trait_ontology
TO:0000743
Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
subterranean shoot axis tuber shape
A subterranean shoot axis tuber morphology trait (TO:0000742) which is the shape of a subterranean shoot axis tuber (PO:0004547).
PO:0004547
TO:cooperl
A subterranean shoot axis tuber morphology trait (TO:0000742) which is the size of a subterranean shoot axis tuber (PO:0004547).
moorel
2012-04-19T10:51:20Z
tuber size (broad)
PATO:0000117
TO_GIT:56
plant_trait_ontology
TO:0000744
Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.
subterranean shoot axis tuber size
A subterranean shoot axis tuber morphology trait (TO:0000742) which is the size of a subterranean shoot axis tuber (PO:0004547).
PO:0004547
TO:cooperl
A subterranean shoot axis tuber morphology trait (TO:0000742) which is the appearance of a subterranean shoot axis tuber (PO:0004547).
moorel
2012-04-19T10:54:11Z
tuber appearance (broad)
TO_GIT:56
plant_trait_ontology
TO:0000745
A 1-9 scale is used to score the overall appearance of the tuber, with 1 the lowest score (very poor) and 9 the highest (excellent).
subterranean shoot axis tuber appearance
A subterranean shoot axis tuber morphology trait (TO:0000742) which is the appearance of a subterranean shoot axis tuber (PO:0004547).
PO:0004547
TO:cooperl
A subterranean shoot axis tuber morphology trait (TO:0000742) which is the mass of a subterranean shoot axis tuber (PO:0004547).
moorel
2012-04-19T10:56:34Z
tuber mass (broad)
PATO:0000125
TO_GIT:56
tuber weight (exact)
plant_trait_ontology
TO:0000746
Refer to mass (PATO:0000125): A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter.
subterranean shoot axis tuber mass
A subterranean shoot axis tuber morphology trait (TO:0000742) which is the mass of a subterranean shoot axis tuber (PO:0004547).
PO:0004547
TO:cooperl
A plant organ morphology trait (TO:0000736) which is quality of a phyllome (PO:0006001).
moorel
2012-04-25T01:09:12Z
TO_GIT:60
plant_trait_ontology
TO:0000747
phyllome morphology trait
A plant organ morphology trait (TO:0000736) which is quality of a phyllome (PO:0006001).
PO:0006001
TO:cooperl
A phyllome morphology trait (TO:0000747) which is quality of a leaf (PO:0025034).
moorel
2012-04-25T01:16:59Z
TO_GIT:60
plant_trait_ontology
TO:0000748
leaf morphology trait
A phyllome morphology trait (TO:0000747) which is quality of a leaf (PO:0025034).
PO:0025034
TO:cooperl
A vascular leaf morphology trait (TO:0000419) which is a quality of a cotyledon (PO:0020030).
moorel
2012-04-25T01:18:38Z
TO_GIT:61
plant_trait_ontology
TO:0000749
cotyledon morphology trait
A vascular leaf morphology trait (TO:0000419) which is a quality of a cotyledon (PO:0020030).
PO:0020030
TO:cooperl
A seedling cotyledon morphology trait (TO:0000774) which is the color of a seedling cotyledon (PO:0025471).
moorel
2012-04-25T01:38:00Z
PATO:0000014
TO_GIT:61
plant_trait_ontology
TO:0000750
seedling cotyledon color
A seedling cotyledon morphology trait (TO:0000774) which is the color of a seedling cotyledon (PO:0025471).
PO:0025471
TO:cooperl
A seedling cotyledon morphology trait (TO:0000774) which is the number of seedling cotyledons (PO:0025471).
moorel
2012-04-25T01:43:38Z
PATO:0000070
TO_GIT:61
plant_trait_ontology
TO:0000751
seedling cotyledon number
A seedling cotyledon morphology trait (TO:0000774) which is the number of seedling cotyledons (PO:0025471).
PO:0025471
TO:cooperl
A seedling cotyledon morphology trait (TO:0000774) which is the size of a seedling cotyledon (PO:0025471).
moorel
2012-04-25T01:47:23Z
PATO:0000117
TO_GIT:60
plant_trait_ontology
TO:0000752
seedling cotyledon size
A seedling cotyledon morphology trait (TO:0000774) which is the size of a seedling cotyledon (PO:0025471).
PO:0025471
TO:cooperl
A plant organ morphology trait (TO:0000736) which is a quality of a coleoptile (PO:0020033).
moorel
2012-04-26T12:12:50Z
TO_GIT:62
plant_trait_ontology
TO:0000753
coleoptile morphology trait
A plant organ morphology trait (TO:0000736) which is a quality of a coleoptile (PO:0020033).
PO:0020033
TO:cooperl
A cardinal organ part of a multi-tissue plant structure morphology trait (TO:0000837) which is a quality of a cardinal organ part (PO:0025001).
moorel
2012-04-26T13:09:13Z
TO_GIT:63
plant_trait_ontology
TO:0000754
cardinal organ part morphology trait
A cardinal organ part of a multi-tissue plant structure morphology trait (TO:0000837) which is a quality of a cardinal organ part (PO:0025001).
PO:0025001
TO:cooperl
TO:moorel
A cardinal organ part morphology trait (TO:0000754) which is a quality of a shoot axis internode (PO:0005005).
moorel
2012-04-26T13:12:37Z
TO_GIT:64
plant_trait_ontology
TO:0000755
shoot axis internode morphology trait
A cardinal organ part morphology trait (TO:0000754) which is a quality of a shoot axis internode (PO:0005005).
PO:0005005
TO:cooperl
A shoot axis internode morphology trait (TO:0000755) which is a quality of a stem internode (PO:0020142).
moorel
2012-04-26T13:17:31Z
TO_GIT:64
plant_trait_ontology
TO:0000756
stem internode morphology trait
A shoot axis internode morphology trait (TO:0000755) which is a quality of a stem internode (PO:0020142).
PO:0020142
TO:cooperl
A stem internode morphology trait (TO:0000756) which is a quality of a hypocotyl (PO:0020100).
moorel
2012-04-26T13:21:05Z
TO_GIT:64
plant_trait_ontology
TO:0000757
hypocotyl morphology trait
A stem internode morphology trait (TO:0000756) which is a quality of a hypocotyl (PO:0020100).
PO:0020100
TO:cooperl
A stem internode morphology trait (TO:0000756) which is a quality of a mesocotyl (PO:0020037).
moorel
2012-04-26T13:30:24Z
TO_GIT:64
plant_trait_ontology
TO:0000758
mesocotyl morphology trait
A stem internode morphology trait (TO:0000756) which is a quality of a mesocotyl (PO:0020037).
PO:0020037
TO:cooperl
A seedling hypocotyl morphology trait (TO:0000769) which is the color of a seedling hypocotyl (PO:0025291).
moorel
2012-04-26T13:41:13Z
PATO:0000014
TO_GIT:64
plant_trait_ontology
TO:0000759
The color of a seedling hypocotyl (PO:0025291) during the hypocotyl emergence stage (PO:0007043).
seedling hypocotyl color
A seedling hypocotyl morphology trait (TO:0000769) which is the color of a seedling hypocotyl (PO:0025291).
PO:0025291
TO:cooperl
A seedling hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the color green.
moorel
2012-04-30T13:15:20Z
PATO:0000014
PATO:0000320
plant_trait_ontology
TO:0000760
Refers to green (PATO:0000320): A color hue with medium-low wavelength of that portion of the visible spectrum lying between yellow and blue, evoked in the human observer by radiant energy with wavelengths of approximately 490 to 570 nanometers.
seedling hypocotyl green
A seedling hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the color green.
PATO:0000320
PO:0020100
TO:cooperl
A seedling hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the color green with a bronze band.
moorel
2012-04-30T13:16:51Z
PATO:0000014
PATO:0000320
PATO:0002363
plant_trait_ontology
TO:0000761
Refers to green ((PATO:0000320): A color hue with medium-low wavelength of that portion of the visible spectrum lying between yellow and blue, evoked in the human observer by radiant energy with wavelengths of approximately 490 to 570 nanometers) and bronze ((PATO:0002363): A medium brown color with a metallic sheen, resembles the actual alloy bronze).
seedling hypocotyl green with bronze band
A seedling hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the color green with a bronze band.
PATO:0000320
PO:0020100
TO:cooperl
A seedling hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the color purple.
moorel
2012-04-30T13:18:41Z
PATO:0000014
PATO:0000951
plant_trait_ontology
TO:0000762
Refers to purple (PATO:0000951): A color that falls about midway between red and blue in hue.
seedling hypocotyl purple
A seedling hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the color purple.
PATO:0000951
PO:0020100
TO:cooperl
A seedling hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the color dark purple.
moorel
2012-04-30T13:20:07Z
PATO:0000014
PATO:0001259
plant_trait_ontology
TO:0000763
Refers to dark purple (PATO:0001259): A color consisting of purple color and low brightness.
seedling hypocotyl dark purple
A seedling hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the color dark purple.
PATO:0001259
PO:0020100
TO:cooperl
A cardinal organ part morphology trait (TO:0000754) which is a quality of a stalk (PO:0025066).
moorel
2012-04-30T13:27:43Z
plant_trait_ontology
TO:0000764
stalk morphology trait
A cardinal organ part morphology trait (TO:0000754) which is a quality of a stalk (PO:0025066).
PO:0025066
TO:cooperl
A stalk morphology trait (TO:0000764) which is a quality of a petiole (PO:0020038).
moorel
2012-04-30T13:29:38Z
TO_GIT:87
plant_trait_ontology
TO:0000765
petiole morphology trait
A stalk morphology trait (TO:0000764) which is a quality of a petiole (PO:0020038).
PO:0020038
TO:cooperl
A petiole morphology trait (TO:0000765) which is the length of a petiole (PO:0020038).
moorel
2012-04-30T13:31:22Z
PATO:0000122
TO_GIT:87
plant_trait_ontology
TO:0000766
petiole length
A petiole morphology trait (TO:0000765) which is the length of a petiole (PO:0020038).
PO:0020038
TO:cooperl
A petiole morphology trait (TO:0000765) which is the shape of a petiole (PO:0020038).
moorel
2012-04-30T13:33:50Z
PATO:0000052
TO_GIT:87
plant_trait_ontology
TO:0000767
petiole shape
A petiole morphology trait (TO:0000765) which is the shape of a petiole (PO:0020038).
PO:0020038
TO:cooperl
A petiole morphology trait (TO:0000765) which is the size of a petiole (PO:0020038).
moorel
2012-04-30T13:37:02Z
PATO:0000117
TO_GIT:87
plant_trait_ontology
TO:0000768
petiole size
A petiole morphology trait (TO:0000765) which is the size of a petiole (PO:0020038).
PO:0020038
TO:cooperl
A hypocotyl morphology trait (TO:0000757) which a seedling hypocotyl (PO:0025291).
moorel
2012-05-03T12:51:59Z
plant_trait_ontology
TO:0000769
Use this term to describe traits for a seedling hypocotyl (PO:002529; a hypocotyl (PO:0020100) that is part of a whole plant (PO:0000003) in the seedling development stage (PO:0007131)).
seedling hypocotyl morphology trait
A hypocotyl morphology trait (TO:0000757) which a seedling hypocotyl (PO:0025291).
PO:0025291
TO:cooperl
A bacterial disease resistance (TO:0000315) that is involved in the response to bacterial blight disease.
moorel
2012-05-04T13:30:57Z
TO_GIT:66
plant_trait_ontology
TO:0000770
bacterial blight disease resistance
A bacterial disease resistance (TO:0000315) that is involved in the response to bacterial blight disease.
TO:cooperl
A hypocotyl morphology trait (TO:0000757) which is a quality of an embryo hypocotyl (PO:0025290).
moorel
2012-05-04T13:47:12Z
plant_trait_ontology
TO:0000771
Use this term to describe traits for embryo hypocotyl (A hypocotyl (PO:0020100) that is part of a plant embryo (PO:0009009)).
embryo hypocotyl morphology trait
A hypocotyl morphology trait (TO:0000757) which is a quality of an embryo hypocotyl (PO:0025290).
PO:0025290
TO:cooperl
A mesocotyl morphology trait (TO:0000758) which is a quality of a seedling mesocotyl (PO:0025295).
moorel
2012-05-04T13:52:34Z
plant_trait_ontology
TO:0000772
Use this term to descride traits for seedling mesocotyl (PO:0025295: A seedling mesocotyl is an elongation of and embryonic mesocotyl that is part of a whole plant in the seedling phase).
seedling mesocotyl morphology trait
A mesocotyl morphology trait (TO:0000758) which is a quality of a seedling mesocotyl (PO:0025295).
PO:0025295
TO:cooperl
A mesocotyl morphology trait (TO:0000758) which is a quality of an embryo mesocotyl (PO:0025294).
moorel
2012-05-04T13:57:56Z
plant_trait_ontology
TO:0000773
embryo mesocotyl morphology trait
A mesocotyl morphology trait (TO:0000758) which is a quality of an embryo mesocotyl (PO:0025294).
PO:0025294
TO:cooperl
A cotyledon morphology trait (TO:0000749) which is a quality of a seedling cotyledon (PO:0025471).
moorel
2012-05-11T12:28:54Z
TO_GIT:61
plant_trait_ontology
TO:0000774
Use this term to describe traits for a seedling cotyledon ((PO:0025471):A cotyledon (PO:0020030) that is part of a whole plant (PO:0000003) in the seedling development stage (PO:0007131)).
seedling cotyledon morphology trait
A cotyledon morphology trait (TO:0000749) which is a quality of a seedling cotyledon (PO:0025471).
PO:0025471
TO:cooperl
A cotyledon morphology trait (TO:0000749) which is a quality of a plant embryo cotyledon (PO:0025470).
moorel
2012-05-11T12:34:04Z
plant_trait_ontology
TO:0000775
Use this term to describe traits for an plant embryo cotyledon (PO:0025470): A cotyledon (PO:0020030) that is part of a plant embryo (PO:0009009).
plant embryo cotyledon morphology trait
A cotyledon morphology trait (TO:0000749) which is a quality of a plant embryo cotyledon (PO:0025470).
PO:0025470
TO:cooperl
A shoot axis morphology trait (TO:0000739) which is a quality of a peduncle (PO:0009053).
moorel
2012-05-17T12:28:05Z
TO_GIT:88
plant_trait_ontology
TO:0000776
peduncle morphology trait
A shoot axis morphology trait (TO:0000739) which is a quality of a peduncle (PO:0009053).
PO:0009053
TO:cooperl
A peduncle morphology trait (TO:0000776) which is a quality of the presence of cuticular wax (PO:0025386).
moorel
2012-05-17T12:29:02Z
TO_GIT:88
plant_trait_ontology
TO:0000777
peduncle waxiness
A peduncle morphology trait (TO:0000776) which is a quality of the presence of cuticular wax (PO:0025386).
PO:0025386
TO:cooperl
A peduncle morphology trait (TO:0000776) which is the type of a peduncle (PO:0009053).
moorel
2012-05-17T13:54:47Z
plant_trait_ontology
TO:0000778
peduncle type
A peduncle morphology trait (TO:0000776) which is the type of a peduncle (PO:0009053).
PO:0009053
TO:cooperl
A peduncle morphology trait (TO:0000776) which is the color of a peduncle (PO:0009053).
moorel
2012-05-17T13:58:50Z
PATO:0000014
plant_trait_ontology
TO:0000779
Refers to the color ((PATO:0000014):A composite chromatic quality composed of hue, saturation and intensity parts) of a peduncle (PO:0009053).
peduncle color
A peduncle morphology trait (TO:0000776) which is the color of a peduncle (PO:0009053).
PO:0009053
TO:cooperl
A peduncle morphology trait (TO:0000776) which is the attachment quality of a peduncle (PO:0009053).
moorel
2012-05-17T14:01:07Z
PATO:0001435
plant_trait_ontology
pod attachment (related)
TO:0000780
Refers to the attachment quatlity ((PATO:0001435): A structural quality inhering in a bearer by virtue of the bearer's having connection or association with another entity) of a peduncle (PO:0009053).
peduncle attachment
A peduncle morphology trait (TO:0000776) which is the attachment quality of a peduncle (PO:0009053).
PO:0009053
TO:cooperl
A seedling hypocotyl morphology trait (TO:0000769) which is the size of a seedling hypocotyl (PO:0025291).
moorel
2012-05-17T14:19:59Z
PATO:0000117
plant_trait_ontology
TO:0000781
seedling hypocotyl size
A seedling hypocotyl morphology trait (TO:0000769) which is the size of a seedling hypocotyl (PO:0025291).
PO:0025291
TO:cooperl
A shoot axis morphology trait (TO:0000739) which is a quality of an inflorescence axis (PO:0020122).
moorel
2012-05-17T14:39:45Z
plant_trait_ontology
TO:0000782
inflorescence axis morphology trait
A shoot axis morphology trait (TO:0000739) which is a quality of an inflorescence axis (PO:0020122).
PO:0020122
TO:cooperl
An inflorescence axis morphology trait (TO:0000782) which is the size of an inflorescence axis (PO:0020122).
moorel
2012-05-17T14:42:14Z
PATO:0000117
plant_trait_ontology
TO:0000783
Refers to the size ((PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude) of an inflorescence axis (PO:0020122).
inflorescence axis size
An inflorescence axis morphology trait (TO:0000782) which is the size of an inflorescence axis (PO:0020122).
PO:0020122
TO:cooperl
A inflorescence axis morphology trait (TO:0000782) which is a quality of an inflorescence branch (PO:0009081).
moorel
2012-05-18T13:25:20Z
plant_trait_ontology
TO:0000784
inflorescence branch morphology trait
A inflorescence axis morphology trait (TO:0000782) which is a quality of an inflorescence branch (PO:0009081).
PO:0009081
TO:cooperl
An inflorescence branch morphology trait (TO:0000784) which is a quality of a tassel branch (PO:0006323).
moorel
2012-05-18T13:29:07Z
TO_GIT:89
plant_trait_ontology
TO:0000785
tassel branch morphology trait
An inflorescence branch morphology trait (TO:0000784) which is a quality of a tassel branch (PO:0006323).
PO:0006323
TO:cooperl
A shoot system morphology trait (TO:0000077) that is a quality of a reproductive shoot system (PO:0025082).
moorel
2012-05-18T13:35:01Z
TO_GIT:57
plant_trait_ontology
TO:0000786
reproductive shoot system morphology trait
A shoot system morphology trait (TO:0000077) that is a quality of a reproductive shoot system (PO:0025082).
PO:0025082
TO:cooperl
An inflorescence morphology trait (TO:0000373) which is the waxiness of an inflorescence (PO:0009049).
moorel
2012-05-18T13:38:09Z
plant_trait_ontology
TO:0000787
inflorescence waxiness
An inflorescence morphology trait (TO:0000373) which is the waxiness of an inflorescence (PO:0009049).
PO:0009049
TO:cooperl
An inflorescence morphology trait (TO:0000373) which is a quality of a tassel inflorescence (PO:0020126).
moorel
2012-05-18T13:45:59Z
TO_GIT:89
plant_trait_ontology
TO:0000788
tassel inflorescence morphology trait
An inflorescence morphology trait (TO:0000373) which is a quality of a tassel inflorescence (PO:0020126).
PO:0020126
TO:cooperl
A shoot system morphology trait (TO:0000077) which is a quality of a bud (PO:0000055).
moorel
2012-05-24T13:52:40Z
TO_GIT:91
plant_trait_ontology
TO:0000789
bud morphology trait
A shoot system morphology trait (TO:0000077) which is a quality of a bud (PO:0000055).
PO:0000055
TO:cooperl
A bud morphology trait (TO:0000789) which is a quality of an axillary bud (PO:0004709).
moorel
2012-05-24T13:55:08Z
TO_GIT:91
plant_trait_ontology
TO:0000790
axillary bud morphology trait
A bud morphology trait (TO:0000789) which is a quality of an axillary bud (PO:0004709).
PO:0004709
TO:cooperl
An axillary bud morphology trait (TO:0000790) which the size of an axillary bud (PO:0004709).
moorel
2012-05-30T13:20:21Z
PATO:0000117
TO_GIT:91
plant_trait_ontology
TO:0000791
Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large.
axillary bud size
An axillary bud morphology trait (TO:0000790) which the size of an axillary bud (PO:0004709).
PO:0004709
TO:cooperl
An axillary bud morphology trait (TO:0000790) which is the number of axillary buds (PO:0004709) on a stalk or stem.
moorel
2012-05-30T13:23:10Z
PATO:0001056
TO_GIT:91
plant_trait_ontology
TO:0000792
Refer to number (PATO:0001056).
axillary bud number
An axillary bud morphology trait (TO:0000790) which is the number of axillary buds (PO:0004709) on a stalk or stem.
PO:0004709
TO:cooperl
An axillary bud morphology trait (TO:0000790) which is the shape of an axillary bud (PO:0004709).
moorel
2012-05-30T13:25:45Z
PATO:0000052
TO_GIT:91
plant_trait_ontology
TO:0000793
Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
axillary bud shape
An axillary bud morphology trait (TO:0000790) which is the shape of an axillary bud (PO:0004709).
PO:0004709
TO:cooperl
An axillary bud morphology trait (TO:0000790) which is the prominence of an axillary bud (PO:0004709).
moorel
2012-05-30T13:29:13Z
PATO:0014820
TO_GIT:91
plant_trait_ontology
TO:0000794
Refer to prominent (PATO:0014820): A protruding quality inhering in a bearer by virtue of the bearer's standing out or projecting beyond a surface or line. Promenence categorized by hidden, medium or exposed.
axillary bud prominence
An axillary bud morphology trait (TO:0000790) which is the prominence of an axillary bud (PO:0004709).
PO:0004709
TO:cooperl
A tassel inflorescence morphology trait (TO:0000788) which is the color of a tassel inflorescence (PO:0020126).
moorel
2012-05-30T13:56:54Z
PATO:0000014
TO_GIT:89
plant_trait_ontology
TO:0000795
Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts.
tassel inflorescence color
A tassel inflorescence morphology trait (TO:0000788) which is the color of a tassel inflorescence (PO:0020126).
PO:0020126
TO:cooperl
A tassel inflorescence morphology trait (TO:0000788) which is the circumference of a tassel inflorescence (PO:0020126).
moorel
2012-05-30T14:00:19Z
PATO:0001684
TO_GIT:89
plant_trait_ontology
TO:0000796
Refer to circumference PATO:0001684: An 1-D extent quality which is equal to the length of the closed curve of a circle.
tassel inflorescence circumference
A tassel inflorescence morphology trait (TO:0000788) which is the circumference of a tassel inflorescence (PO:0020126).
PO:0020126
TO:cooperl
A tassel inflorescence morphology trait (TO:0000788) which is the height of a tassel inflorescence (PO:0020126).
moorel
2012-05-30T14:04:13Z
PATO:0000119
TO_GIT:89
plant_trait_ontology
TO:0000797
Refer to height PATO:0000119: A 1-D extent quality inhering in a bearer by virtue of the bearer's vertical dimension of extension.
tassel inflorescence height
A tassel inflorescence morphology trait (TO:0000788) which is the height of a tassel inflorescence (PO:0020126).
PO:0020126
TO:cooperl
A tassel inflorescence morphology trait (TO:0000788) which is the length of a tassel inflorescence (PO:0020126).
moorel
2012-05-30T14:06:52Z
PATO:0000122
TO_GIT:89
plant_trait_ontology
TO:0000798
Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points.
tassel inflorescence length
A tassel inflorescence morphology trait (TO:0000788) which is the length of a tassel inflorescence (PO:0020126).
PMID:28373892
PO:0020126
TO:cooperl
A tassel inflorescence morphology trait (TO:0000788) which is the diameter of a tassel inflorescence (PO:0020126).
moorel
2012-05-30T14:09:31Z
PATO:0001334
TO_GIT:89
plant_trait_ontology
TO:0000799
Refer to diameter PATO:0001334: A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary.
tassel inflorescence diameter
A tassel inflorescence morphology trait (TO:0000788) which is the diameter of a tassel inflorescence (PO:0020126).
PO:0020126
TO:cooperl
An inflorescence morphology trait (TO:0000373) which is the density of an inflorescence (PO:0009049).
moorel
2012-06-01T13:16:10Z
PATO:0001070
TO_GIT:92
TO_GIT:97
head density (narrow)
plant_trait_ontology
TO:0000800
Refer to absolute density PATO:0001070.
inflorescence density
An inflorescence morphology trait (TO:0000373) which is the density of an inflorescence (PO:0009049).
PO:0009049
TO:cooperl
An inflorescence morphology trait (TO:0000373) which is the depth of an inflorescence (PO:0009049).
moorel
2012-06-01T13:18:51Z
PATO:0001595
TO_GIT:92
TO_GIT:97
head depth (narrow)
plant_trait_ontology
TO:0000801
Refer to depth PATO:0001595: A 1-D extent quality inhering in a bearer by virtue of the bearer's downward or backward or inward dimenision.
inflorescence depth
An inflorescence morphology trait (TO:0000373) which is the depth of an inflorescence (PO:0009049).
PO:0009049
TO:cooperl
An inflorescence morphology trait (TO:0000373) which is the diameter of an inflorescence (PO:0009049).
moorel
2012-06-01T13:20:49Z
TO:0000679
PATO:0001334
TO_GIT:92
TO_GIT:97
head diameter (narrow)
plant_trait_ontology
TO:0000802
Refer to diameter PATO:0001334:A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary.
inflorescence diameter
An inflorescence morphology trait (TO:0000373) which is the diameter of an inflorescence (PO:0009049).
PO:0009049
TO:cooperl
An inflorescence morphology trait (TO:0000373) which is the weight of an inflorescence (PO:0009049).
moorel
2012-06-01T13:23:12Z
PATO:0000128
TO_GIT:92
TO_GIT:97
head weight (narrow)
plant_trait_ontology
TO:0000803
Refer to weight PATO:0000128:A physical quality inhering in a bearer that has mass near a gravitational body.
inflorescence weight
An inflorescence morphology trait (TO:0000373) which is the weight of an inflorescence (PO:0009049).
PO:0009049
TO:cooperl
An inflorescence morphology trait (TO:0000373) which is the width of an inflorescence (PO:0009049).
moorel
2012-06-01T13:25:43Z
TO:0000637
PATO:0000921
TO_GIT:92
TO_GIT:97
head width (narrow)
plant_trait_ontology
INFLWD (related)
TO:0000804
Refer to width PATO:0000921: A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite.
inflorescence width
An inflorescence morphology trait (TO:0000373) which is the width of an inflorescence (PO:0009049).
PO:0009049
TO:cooperl
An inflorescence morphology trait (TO:0000373) which with the texture of an inflorescence (PO:0009049).
moorel
2012-06-01T13:28:08Z
PATO:0000150
TO_GIT:92
TO_GIT:97
head texture (narrow)
plant_trait_ontology
TO:0000805
Refer to texture PATO:0000150: A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics.
inflorescence texture
An inflorescence morphology trait (TO:0000373) which with the texture of an inflorescence (PO:0009049).
PO:0009049
TO:cooperl
A reproductive shoot system morphology trait (TO:0000786) which is the presence of an inflorescence (PO:0009049).
moorel
2012-06-01T13:30:09Z
PATO:0000458
TO_GIT:97
plant_trait_ontology
TO:0000806
Refer to presence value PATO:0000458.
inflorescence presence
A reproductive shoot system morphology trait (TO:0000786) which is the presence of an inflorescence (PO:0009049).
PO:0009049
TO:cooperl
A collective organ part structure morphology trait (TO:0000841) which is a quality of a pseudostem (PO:0025248).
moorel
2012-06-01T13:35:28Z
TO_GIT:94
TO_GIT:96
plant_trait_ontology
TO:0000807
pseudostem morphology trait
A collective organ part structure morphology trait (TO:0000841) which is a quality of a pseudostem (PO:0025248).
PO:0025248
TO:cooperl
A pseudostem morphology trait (TO:0000807) which is the length of a pseudostem (PO:0025248).
moorel
2012-06-01T13:38:37Z
PATO:0000122
TO_GIT:94
plant_trait_ontology
TO:0000808
Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points.
pseudostem length
A pseudostem morphology trait (TO:0000807) which is the length of a pseudostem (PO:0025248).
PO:0025248
TO:cooperl
A pseudostem morphology trait (TO:0000807) which is the shape of a pseudostem (PO:0025248).
moorel
2012-06-01T13:40:25Z
PATO:0000052
TO_GIT:94
TO_GIT:96
plant_trait_ontology
TO:0000809
Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
pseudostem shape
A pseudostem morphology trait (TO:0000807) which is the shape of a pseudostem (PO:0025248).
PO:0025248
TO:cooperl
A pseudostem morphology trait (TO:0000807) which is the color of a pseudostem (PO:0025248).
moorel
2012-06-01T13:43:28Z
PATO:0000014
TO_GIT:94
TO_GIT:96
plant_trait_ontology
TO:0000810
Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts.
pseudostem color
A pseudostem morphology trait (TO:0000807) which is the color of a pseudostem (PO:0025248).
PO:0025248
TO:cooperl
A pseudostem morphology trait (TO:0000807) which is the diameter of a pseudostem (PO:0025248).
moorel
2012-06-01T13:45:05Z
PATO:0001334
TO_GIT:94
TO_GIT:96
plant_trait_ontology
TO:0000811
Refer to diameter PATO:0001334:A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary.
pseudostem diameter
A pseudostem morphology trait (TO:0000807) which is the diameter of a pseudostem (PO:0025248).
PO:0025248
TO:cooperl
A tassel branch morphology trait (TO:0000785) which is the dry weight of a tassel branch (PO:0006323) prior to pollen shed.
moorel
2012-06-26T12:37:26Z
PATO:0000128
PATO:0001824
TO_GIT:89
plant_trait_ontology
TO:0000812
Refer to dry PATO:0001824: A wetness quality inhering in a bearer by virtue of the bearer's not being covered by a liquid.
Refer to weight PATO:0000128: A physical quality inhering in a bearer that has mass near a gravitational body.
tassel branch dry weight
A tassel branch morphology trait (TO:0000785) which is the dry weight of a tassel branch (PO:0006323) prior to pollen shed.
PO:0006323
TO:cooperl
A tassel branch morphology trait (TO:0000785) which is the number of tassel branches (PO:0006323).
moorel
2012-06-26T12:40:53Z
PATO:0001056
TO_GIT:89
plant_trait_ontology
TO:0000813
Refer to number PATO:0001056.
tassel branch number
A tassel branch morphology trait (TO:0000785) which is the number of tassel branches (PO:0006323).
PO:0006323
TO:cooperl
A tassel inflorescence morphology trait (TO:0000788) which is the type of tassel inflorescence (PO:0020126).
moorel
2012-06-26T12:47:20Z
PATO:0000052
TO_GIT:89
plant_trait_ontology
TO:0000814
Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
tassel inflorescence type
A tassel inflorescence morphology trait (TO:0000788) which is the type of tassel inflorescence (PO:0020126).
PO:0020126
TO:cooperl
A phyllome morphology trait (TO:0000747) which is a quality of a bract (PO:0009055).
moorel
2012-06-26T14:29:09Z
TO_GIT:109
plant_trait_ontology
TO:0000815
bract morphology trait
A phyllome morphology trait (TO:0000747) which is a quality of a bract (PO:0009055).
PO:0009055
TO:cooperl
A bract morphology trait (TO:0000815) which is the quality of an inflorescence bract (PO:0009054).
moorel
2012-06-26T14:31:08Z
TO_GIT:110
husk (exact)
plant_trait_ontology
TO:0000816
inflorescence bract morphology trait
A bract morphology trait (TO:0000815) which is the quality of an inflorescence bract (PO:0009054).
PO:0009054
TO:cooperl
An inflorescence bract morphology trait (TO:0000816) which is the length of an inflorescence bract (PO:0009054).
moorel
2012-06-26T14:34:28Z
PATO:0000122
TO_GIT:110
husk length (exact)
plant_trait_ontology
TO:0000817
Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points.
inflorescence bract length
An inflorescence bract morphology trait (TO:0000816) which is the length of an inflorescence bract (PO:0009054).
PO:0009054
TO:cooperl
An inflorescence bract morphology trait (TO:0000816) which is the cover of an inflorescence bract (PO:0009054) measured as percentage of plants with ears that are not completely covered by the inflorescence bracts.
moorel
2012-06-26T14:38:41Z
TO_GIT:110
husk cover (exact)
plant_trait_ontology
TO:0000818
inflorescence bract cover
An inflorescence bract morphology trait (TO:0000816) which is the cover of an inflorescence bract (PO:0009054) measured as percentage of plants with ears that are not completely covered by the inflorescence bracts.
PO:0009054
TO:cooperl
An inflorescence bract morphology trait (TO:0000819) which is the color of an inflorescence bract (PO:0009054).
moorel
2012-06-26T14:41:14Z
PATO:0000014
TO_GIT:110
husk color (exact)
plant_trait_ontology
TO:0000819
Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts.
inflorescence bract color
An inflorescence bract morphology trait (TO:0000819) which is the color of an inflorescence bract (PO:0009054).
PO:0009054
TO:cooperl
A vascular leaf morphology trait (TO:0000419) which is a quality of a leaf lamina vein (PO:0020138).
moorel
2012-07-02T11:39:41Z
TO_GIT:91
plant_trait_ontology
TO:0000820
leaf vein morphology trait
A vascular leaf morphology trait (TO:0000419) which is a quality of a leaf lamina vein (PO:0020138).
PO:0020138
TO:cooperl
A leaf vein morphology trait (TO:0000820) which is the size of a leaf lamina vein (PO:0020138).
moorel
2012-07-02T11:45:41Z
PATO:0000117
TO_GIT:91
plant_trait_ontology
TO:0000821
Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.
leaf vein size
A leaf vein morphology trait (TO:0000820) which is the size of a leaf lamina vein (PO:0020138).
PO:0020138
TO:cooperl
A leaf vein morphology trait (TO:0000820) which is a quality of a leaf midvein (PO:0020139).
moorel
2012-07-02T11:51:56Z
TO_GIT:91
leaf midrib morphology trait (exact)
plant_trait_ontology
TO:0000822
leaf midvein morphology trait
A leaf vein morphology trait (TO:0000820) which is a quality of a leaf midvein (PO:0020139).
PO:0020139
TO:cooperl
A leaf midvein morphology trait (TO:0000822) which is the thickness of a leaf midvein (PO:0020139).
moorel
2012-07-02T11:56:25Z
PATO:0000915
TO_GIT:91
leaf midrib thickness (exact)
plant_trait_ontology
TO:0000823
Refer to thickness (PATO:0000915): A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width.
leaf midvein thickness
A leaf midvein morphology trait (TO:0000822) which is the thickness of a leaf midvein (PO:0020139).
PO:0020139
TO:cooperl
A leaf morphology trait (TO:0000748) which is the attitude of a leaf (PO:0025034).
moorel
2012-07-02T12:06:18Z
TO_GIT:91
plant_trait_ontology
TO:0000824
Leaf attitude traits refer to the way a leaf is naturally held on the plant. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
leaf attitude
A leaf morphology trait (TO:0000748) which is the attitude of a leaf (PO:0025034).
PO:0025034
TO:cooperl
A leaf morphology trait (TO:0000748) which is the flexibility of a leaf (PO:0025034).
moorel
2012-07-02T12:12:45Z
PATO:0001543
TO_GIT:91
plant_trait_ontology
TO:0000825
Refer to flexibility (PATO:0001543): A physical quality inhering in a bearer by virtue of the bearer's disposition to being turned, bowed, or twisted without breaking. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
leaf flexibility
A leaf morphology trait (TO:0000748) which is the flexibility of a leaf (PO:0025034).
PO:0025034
TO:cooperl
A leaf morphology trait (TO:0000748) which is the volume of a leaf (PO:0025034).
moorel
2012-07-02T12:21:58Z
PATO:0000918
TO_GIT:91
plant_trait_ontology
TO:0000826
Refer to volume (PATO:0000918): A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
leaf volume
A leaf morphology trait (TO:0000748) which is the volume of a leaf (PO:0025034).
PO:0025034
TO:cooperl
A leaf lamina morphology trait (TO:0000829) which is the area of a leaf lamina (PO:0020039).
moorel
2012-07-02T12:30:01Z
PATO:0001323
TO_GIT:91
plant_trait_ontology
TO:0000827
Refer to area (PATO:0001323): A 2-D extent quality inhering in a bearer by virtue of the bearer's two dimensional extent.
leaf lamina area
A leaf lamina morphology trait (TO:0000829) which is the area of a leaf lamina (PO:0020039).
PO:0020039
TO:cooperl
A leaf morphology trait (TO:0000748) which is a quality of the cover of a leaf (PO:0025034).
moorel
2012-07-02T12:36:51Z
TO_GIT:91
plant_trait_ontology
TO:0000828
leaf cover
A leaf morphology trait (TO:0000748) which is a quality of the cover of a leaf (PO:0025034).
PO:0025034
TO:cooperl
A cardinal organ part morphology trait (TO:0000754) which is a quality of a leaf lamina (PO:0020039).
moorel
2012-07-02T13:36:23Z
plant_trait_ontology
TO:0000829
leaf lamina morphology trait
A cardinal organ part morphology trait (TO:0000754) which is a quality of a leaf lamina (PO:0020039).
PO:0020039
A leaf margin morphology trait (TO:0002635)which is a quality of a leaf lamina margin (PO:0025009).
moorel
2012-07-02T13:58:07Z
TO_GIT:142
plant_trait_ontology
TO:0000830
leaf lamina margin morphology trait
A leaf margin morphology trait (TO:0002635)which is a quality of a leaf lamina margin (PO:0025009).
PO:0025009
TO:moorel
A vascular leaf morphology trait (TO:0000419) which is a quality of an adult vascular leaf (PO:0006340).
moorel
2012-07-03T11:54:31Z
TO_GIT:141
plant_trait_ontology
TO:0000831
adult leaf morphology trait
A vascular leaf morphology trait (TO:0000419) which is a quality of an adult vascular leaf (PO:0006340).
PO:0006340
TO:moorel
An adult vascular leaf morphology trait (TO:0000831) which is a quality of a flag leaf (PO:0020103).
moorel
2012-07-03T12:06:07Z
TO_GIT:141
plant_trait_ontology
TO:0000832
flag leaf morphology trait
An adult vascular leaf morphology trait (TO:0000831) which is a quality of a flag leaf (PO:0020103).
PO:0020103
TO:moorel
A cardinal organ part morphology trait (TO:0000754) which is a quality of a organ margin (PO:0025005).
moorel
2012-07-03T12:54:18Z
TO_GIT:142
plant_trait_ontology
TO:0000833
organ margin morphology trait
A cardinal organ part morphology trait (TO:0000754) which is a quality of a organ margin (PO:0025005).
PO:0025005
TO:moorel
An organ margin morphology trait (TO:0000833) which is a quality of a phyllome margin (PO:0025018).
moorel
2012-07-03T12:56:42Z
TO_GIT:142
plant_trait_ontology
TO:0000834
phyllome margin morphology trait
An organ margin morphology trait (TO:0000833) which is a quality of a phyllome margin (PO:0025018).
PO:0025018
TO:moorel
A cardinal organ part morphology trait (TO:0000754) which is a quality of a leaf sheath (PO:0020104).
moorel
2012-07-03T13:07:07Z
TO_GIT:143
plant_trait_ontology
TO:0000835
leaf sheath morphology trait
A cardinal organ part morphology trait (TO:0000754) which is a quality of a leaf sheath (PO:0020104).
PO:0020104
TO:moorel
A plant structure morphology trait (TO:0000839) which is a quality of a multi-tissue plant structure (PO:0025496).
moorel
2012-07-09T11:41:28Z
TO_GIT:147
plant_trait_ontology
TO:0000836
multi-tissue plant structure morphology trait
A plant structure morphology trait (TO:0000839) which is a quality of a multi-tissue plant structure (PO:0025496).
PO:0025496
TO:moorel
A plant structure morphology trait (TO:0000839) which is a quality of a cardinal organ part of a multi-tissue plant structure (PO:0025498).
moorel
2012-07-09T13:36:14Z
TO_GIT:147
plant_trait_ontology
TO:0000837
cardinal part of a multi-tissue plant structure morphology trait
A plant structure morphology trait (TO:0000839) which is a quality of a cardinal organ part of a multi-tissue plant structure (PO:0025498).
PO:0025498
TO:moorel
A portion of plant tissue morphology trait (TO:0000843) which is a quality of the seed coat (PO:0009088).
moorel
2012-07-11T11:29:01Z
TO_GIT:76
plant_trait_ontology
TO:0000838
seed coat morphology trait
A portion of plant tissue morphology trait (TO:0000843) which is a quality of the seed coat (PO:0009088).
PO:0009088
TO:moorel
A plant morphology trait (TO:0000017) which is a quality of a plant structure (PO:0009011).
moorel
2012-07-12T11:29:26Z
TO_GIT:149
plant_trait_ontology
TO:0000839
plant structure morphology trait
A plant morphology trait (TO:0000017) which is a quality of a plant structure (PO:0009011).
PO:0009011
TO:cooperl
TO:moorel
A plant structure morphology trait (TO:0000839) which is a quality of a collective plant structure (PO:0025497).
moorel
2012-07-12T11:42:53Z
TO_GIT:150
plant_trait_ontology
TO:0000840
collective plant structure morphology trait
A plant structure morphology trait (TO:0000839) which is a quality of a collective plant structure (PO:0025497).
PO:0025497
TO:cooperl
TO:moorel
A collective plant structure morphology trait (TO:0000840) which is a quality of a collective organ part structure (PO:0025269).
moorel
2012-07-12T11:49:46Z
TO_GIT:150
plant_trait_ontology
TO:0000841
collective organ part structure morphology trait
A collective plant structure morphology trait (TO:0000840) which is a quality of a collective organ part structure (PO:0025269).
PO:0025269
TO:cooperl
TO:moorel
A collective plant structure morphology trait (TO:0000840) which is a quality of a collective plant organ structure (PO:0025007).
moorel
2012-07-12T11:55:17Z
TO_GIT:150
plant_trait_ontology
TO:0000842
collective plant organ structure morphology trait
A collective plant structure morphology trait (TO:0000840) which is a quality of a collective plant organ structure (PO:0025007).
PO:0025007
TO:cooperl
TO:moorel
A plant structure morphology trait (TO:0000839) which is a quality of a portion of plant tissue (PO:0009007).
moorel
2012-07-12T12:18:33Z
TO_GIT:151
plant_trait_ontology
TO:0000843
portion of plant tissue morphology trait
A plant structure morphology trait (TO:0000839) which is a quality of a portion of plant tissue (PO:0009007).
PO:0009007
TO:moorel
A plant structure morphology trait (TO:0000839) which is a quality of an in vitro plant structure (PO:0000004).
moorel
2012-07-12T13:52:02Z
TO_GIT:149
plant_trait_ontology
TO:0000844
in vitro plant structure morphology trait
A plant structure morphology trait (TO:0000839) which is a quality of an in vitro plant structure (PO:0000004).
PO:0000004
TO:moorel
A collective plant organ structure morphology trait (TO:0000842) which is a quality of a collective phyllome structure (PO:0025023).
moorel
2012-07-13T11:30:15Z
TO_GIT:304
plant_trait_ontology
TO:0000845
collective phyllome structure morphology trait
A collective plant organ structure morphology trait (TO:0000842) which is a quality of a collective phyllome structure (PO:0025023).
PO:0025023
TO:cooperl
TO:moorel
An inflorescence branch morphology trait (TO:0000784) which is a quality of a second order inflorescence axis (PO:0006321).
moorel
2012-07-13T13:09:22Z
plant_trait_ontology
TO:0000846
inflorescence primary branch morphology trait
An inflorescence branch morphology trait (TO:0000784) which is a quality of a second order inflorescence axis (PO:0006321).
PO:0006321
TO:moorel
An inflorescence morphology trait (TO:0000373) which is a quality of a panicle inflorescence (PO:0030123).
moorel
2012-07-13T13:43:22Z
TO_GIT:154
plant_trait_ontology
panicle related trait (related)
TO:0000847
panicle inflorescence morphology trait
An inflorescence morphology trait (TO:0000373) which is a quality of a panicle inflorescence (PO:0030123).
TO:cooperl
TO:moorel
A fruit size trait (TO:0002625) which is the diameter of a fruit (PO:0009001).
moorel
2012-07-16T12:31:27Z
PATO:0001334
plant_trait_ontology
TO:0000848
Refer to diameter (PATO:0001334): A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary.
fruit diameter
A fruit size trait (TO:0002625) which is the diameter of a fruit (PO:0009001).
PO:0009001
TO:moorel
A fruit morphology trait (TO:0002629) which is the attachment of a fruit (PO:0009001).
moorel
2012-07-16T12:39:53Z
PATO:0001435
plant_trait_ontology
TO:0000849
Refer to attachment quality (PATO:0001435): A structural quality inhering in a bearer by virtue of the bearer's having connection or association with another entity.
fruit attachment
A fruit morphology trait (TO:0002629) which is the attachment of a fruit (PO:0009001).
PO:0009001
TO:moorel
A fruit morphology trait (TO:0002629) which is the type of a fruit (PO:0009001).
moorel
2012-07-16T12:45:56Z
plant_trait_ontology
TO:0000850
fruit type
A fruit morphology trait (TO:0002629) which is the type of a fruit (PO:0009001).
PO:0009001
TO:moorel
A fruit morphology trait (TO:0002629) which is the presence or absence of hair on a fruit (PO:0009001).
moorel
2012-07-16T12:48:45Z
PATO:0000454
TO_GIT:131
plant_trait_ontology
TO:0000851
Refer to hairy (PATO:0000454): A pilosity quality inhering in a bearer by virtue of the bearer's being covered with hair or hairlike projections.
fruit hairiness
A fruit morphology trait (TO:0002629) which is the presence or absence of hair on a fruit (PO:0009001).
PO:0009001
TO:moorel
A fruit growth and development trait (TO:0000929) which is the absence or presence of a fruit (PO:0009001).
moorel
2012-07-16T12:53:17Z
TO_GIT:131
plant_trait_ontology
TO:0000852
In cassava fruit set is a visual rating with 0 = absent and 1 = present.
fruit set trait
A fruit growth and development trait (TO:0000929) which is the absence or presence of a fruit (PO:0009001).
TO:moorel
A spikelet floret morphology trait (TO:0000274) which is the shape of a spikelet floret (PO:0009082).
moorel
TO_GIT:105
plant_trait_ontology
TO:0000853
Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
spikelet floret shape
A spikelet floret morphology trait (TO:0000274) which is the shape of a spikelet floret (PO:0009082).
PATO:0000052
PO:0009082
TO:cooperl
TO:moorel
A spikelet floret morphology trait (TO:0000274) which is the size of a spikelet floret (PO:0009082).
moorel
2012-07-16T13:08:42Z
TO_GIT:105
plant_trait_ontology
TO:0000854
Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large.
spikelet floret size
A spikelet floret morphology trait (TO:0000274) which is the size of a spikelet floret (PO:0009082).
PATO:0000117
PO:0009082
TO:cooperl
TO:moorel
A spikelet floret morphology trait (TO:0000274) which is the diameter of a spikelet floret (PO:0009082).
moorel
2012-07-16T13:11:57Z
TO_GIT:105
plant_trait_ontology
TO:0000855
Refer to diameter (PATO:0001334): A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary.
spikelet floret diameter
A spikelet floret morphology trait (TO:0000274) which is the diameter of a spikelet floret (PO:0009082).
PATO:0001334
PO:0009082
TO:cooperl
TO:moorel
A lodiclue morphology trait (TO:0006009) which is the length of a lodicule (PO:0009036).
moorel
2012-07-16T13:47:12Z
PATO:0000122
TO_GIT:105
plant_trait_ontology
TO:0000856
Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
lodicule length
A lodiclue morphology trait (TO:0006009) which is the length of a lodicule (PO:0009036).
PO:0009036
TO:moorel
A lodicule morphology trait (TO:0006009) which is the type of lodicule (PO:0009036).
moorel
2012-07-16T13:51:17Z
TO_GIT:105
plant_trait_ontology
TO:0000857
lodicule type
A lodicule morphology trait (TO:0006009) which is the type of lodicule (PO:0009036).
PO:0009036
TO:moorel
A flower morphology trait (TO:0000499) which is the diameter of a flower (PO:0009046).
moorel
2012-07-25T10:16:56Z
PATO:0001334
TO_GIT:105
plant_trait_ontology
TO:0000858
Refer to diameter (PATO:0001334): A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary.
flower diameter
A flower morphology trait (TO:0000499) which is the diameter of a flower (PO:0009046).
PO:0009046
TO:moorel
A flower morphology trait (TO:0000499) which is the shape of a flower (PO:0009046).
moorel
2012-07-25T10:21:29Z
PATO:0000052
TO_GIT:105
plant_trait_ontology
TO:0000859
Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
flower shape
A flower morphology trait (TO:0000499) which is the shape of a flower (PO:0009046).
PO:0009046
TO:moorel
A flower morphology trait (TO:0000499) which is the length of a flower (PO:0009046).
moorel
2012-07-25T10:27:25Z
PATO:0000122
TO_GIT:105
plant_trait_ontology
TO:0000860
Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
flower length
A flower morphology trait (TO:0000499) which is the length of a flower (PO:0009046).
PO:0009046
TO:moorel
A flower morphology trait (TO:0000499) which is a quality of the flower abscission zone (PO:0006502).
moorel
2012-07-25T10:30:55Z
TO_GIT:105
plant_trait_ontology
TO:0000861
flower abscission zone morphology trait
A flower morphology trait (TO:0000499) which is a quality of the flower abscission zone (PO:0006502).
PO:0006502
TO:moorel
A plant organ morphology trait (TO:0000736) which is a quality of a floral organ (PO:0025395).
moorel
2012-07-25T10:47:57Z
TO_GIT:160
plant_trait_ontology
TO:0000862
floral organ morphology trait
A plant organ morphology trait (TO:0000736) which is a quality of a floral organ (PO:0025395).
PO:0025395
TO:moorel
A phyllome morphology trait (TO:0000747) which is a quality of a petal (PO:0009032).
moorel
2012-07-25T11:18:56Z
TO_GIT:161
plant_trait_ontology
TO:0000863
petal morphology trait
A phyllome morphology trait (TO:0000747) which is a quality of a petal (PO:0009032).
PO:0009032
TO:moorel
A phyllome morphology trait (TO:0000747) which is a quality of a sepal (PO:0009031).
moorel
2012-07-25T11:22:26Z
TO_GIT:161
plant_trait_ontology
TO:0000864
sepal morphology trait
A phyllome morphology trait (TO:0000747) which is a quality of a sepal (PO:0009031).
PO:0009031
TO:moorel
A phyllome morphology trait (TO:0000747) which is a quality of a tepal (PO:0009033).
moorel
2012-07-25T12:19:50Z
TO_GIT:161
plant_trait_ontology
TO:0000865
tepal morphology trait
A phyllome morphology trait (TO:0000747) which is a quality of a tepal (PO:0009033).
PO:0009033
TO:moorel
A phyllome morphology trait (TO:0000747) which is a quality of a sporophyll (PO:0009026).
moorel
2012-07-25T13:04:01Z
TO_GIT:162
plant_trait_ontology
TO:0000866
sporophyll morphology trait
A phyllome morphology trait (TO:0000747) which is a quality of a sporophyll (PO:0009026).
PO:0009026
TO:moorel
A sporophyll morphology trait (TO:0000866) which is a quality of a megasporophyll (PO:0009027).
moorel
2012-07-25T13:05:52Z
TO_GIT:162
plant_trait_ontology
TO:0000867
megasporophyll morphology trait
A sporophyll morphology trait (TO:0000866) which is a quality of a megasporophyll (PO:0009027).
PO:0009027
TO:moorel
A sporophyll morphology trait (TO:0000866) which is a quality of a microsporophyll (PO:0009028).
moorel
2012-07-25T13:07:55Z
plant_trait_ontology
TO:0000868
microsporophyll morphology trait
A sporophyll morphology trait (TO:0000866) which is a quality of a microsporophyll (PO:0009028).
PO:0009028
TO:moorel
An inflorescence bract morphology trait (TO:0000816) which is a quality of a glume (PO:0009039).
moorel
2012-08-08T11:50:03Z
TO_GIT:166
plant_trait_ontology
TO:0000869
glume morphology trait
An inflorescence bract morphology trait (TO:0000816) which is a quality of a glume (PO:0009039).
PO:0009039
TO:moorel
A shoot system yield trait (TO:0000327) which is comprised of leaves (PO:0025034) or parts of leaves.
moorel
2012-10-04T15:42:58Z
plant_trait_ontology
TO:0000870
leaf yield trait
A shoot system yield trait (TO:0000327) which is comprised of leaves (PO:0025034) or parts of leaves.
TO:cooperl
A shoot system yield trait (TO:0000327) which is the yield of fruits (PO:0009001).
moorel
2012-10-04T15:45:03Z
TO_GIT:291
plant_trait_ontology
TO:0000871
fruit yield trait
A shoot system yield trait (TO:0000327) which is the yield of fruits (PO:0009001).
TO:cooperl
A leaf attitude (TO:0000824) which is a leaf held upright away from the substrate or host.
moorel
2012-10-09T13:55:46Z
PATO:0000622
plant_trait_ontology
TO:0000872
Refer to erect (PATO:0000622): A positional quality inhering in a bearer by virtue of the bearer's being upright in position or posture.
leaf erect
A leaf attitude (TO:0000824) which is a leaf held upright away from the substrate or host.
TO:moorel
A leaf attitude (TO:0000824) which is a leaf hanging straight down.
moorel
2012-10-09T14:01:24Z
PATO:0000631
plant_trait_ontology
TO:0000873
Refer to prostrate (PATO:0000631): A positional quality inhering in a bearer by virtue of the bearer's being stretched out and lying at full length along the ground.
leaf prostrate
A leaf attitude (TO:0000824) which is a leaf hanging straight down.
TO:moorel
A leaf attitude (TO:0000824) which is a leaf laying flat against the substrate or host.
moorel
2012-10-09T14:04:08Z
plant_trait_ontology
TO:0000874
leaf penduloum
A leaf attitude (TO:0000824) which is a leaf laying flat against the substrate or host.
TO:moorel
A leaf lamina morphology trait (TO:0000829) which is the splitting of a leaf lamina (PO:0020039).
moorel
2012-10-09T14:11:08Z
PATO:0001786
TO_GIT:91
plant_trait_ontology
TO:0000875
Refer to split (PATO:0001786): A shape quality inhering in a bearer by virtue of the bearer's being divided or broken up into parts or divisions.
leaf lamina splitting
A leaf lamina morphology trait (TO:0000829) which is the splitting of a leaf lamina (PO:0020039).
PO:0020039
TO:moorel
A vascular leaf morphology trait (TO:0000419) which is a quality of a spine leaf (PO:0025173).
moorel
2012-10-09T14:46:53Z
TO_GIT:158
plant_trait_ontology
TO:0000876
spine leaf morphology trait
A vascular leaf morphology trait (TO:0000419) which is a quality of a spine leaf (PO:0025173).
PO:0025173
TO:moorel
A spine leaf morphology trait (TO:0000876) which is the size of the spine leaf (PO:0025173).
moorel
2012-10-09T14:48:19Z
PATO:0000117
TO_GIT:158
plant_trait_ontology
TO:0000877
Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.
spine leaf size
A spine leaf morphology trait (TO:0000876) which is the size of the spine leaf (PO:0025173).
PO:0025173
TO:moorel
A spine leaf morphology trait (TO:0000876) which is the color of the spine leaf (PO:0025173).
moorel
2012-10-09T14:52:10Z
PATO:0000014
TO_GIT:158
plant_trait_ontology
TO:0000878
Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts.
spine leaf color
A spine leaf morphology trait (TO:0000876) which is the color of the spine leaf (PO:0025173).
PO:0025173
TO:moorel
A stem morphology trait (TO:0000361) which is the presence or absence of hair on the stem (PO:0009047).
moorel
2012-10-09T15:17:12Z
PATO:0000454
plant_trait_ontology
TO:0000879
Refer to hairy (PATO:0000454): A pilosity quality inhering in a bearer by virtue of the bearer's being covered with hair or hairlike projections.
stem hairiness
A stem morphology trait (TO:0000361) which is the presence or absence of hair on the stem (PO:0009047).
PO:0009047
TO:moorel
A seed coat morphology trait (TO:0000838) which is the length of the seed coat (PO:0009088).
moorel
2012-10-09T15:27:02Z
PATO:0000122
TO_GIT:76
plant_trait_ontology
TO:0000880
Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
seed coat length
A seed coat morphology trait (TO:0000838) which is the length of the seed coat (PO:0009088).
PO:0009088
TO:moorel
A flower morphology trait (TO:0000499) which is the type of a flower (PO:0009046).
moorel
2012-10-11T11:30:45Z
TO_GIT:175
plant_trait_ontology
TO:0000881
flower type
A flower morphology trait (TO:0000499) which is the type of a flower (PO:0009046).
PO:0009046
TO:moorel
A flower type trait (TO:0000881) which is a flower (PO:0009046) that does not open and favors self pollination.
moorel
2012-10-11T11:33:35Z
TO_GIT:175
plant_trait_ontology
TO:0000882
cleistogamus flower
A flower type trait (TO:0000881) which is a flower (PO:0009046) that does not open and favors self pollination.
PO:0009046
TO:moorel
A flower type trait (TO:0000881) which is a flower (PO:0009046) that opens exposing anthers (PO:0009066) and/or pistil.
moorel
2012-10-11T11:37:02Z
TO_GIT:175
plant_trait_ontology
TO:0000883
chasmogamous flower
A flower type trait (TO:0000881) which is a flower (PO:0009046) that opens exposing anthers (PO:0009066) and/or pistil.
PO:0009046
PO:0009066
TO:moorel
A stalk morphology trait (TO:0000764) which is a quality of a petiolule (PO:0020050).
moorel
2012-10-11T11:53:06Z
TO_GIT:176
plant_trait_ontology
TO:0000884
petiolule morphology trait
A stalk morphology trait (TO:0000764) which is a quality of a petiolule (PO:0020050).
PO:0020050
TO:moorel
A petiolule morphology trait (TO:0000884) which is the color of the petiolule (PO:0020050).
moorel
2012-10-11T11:55:06Z
PATO:0000014
TO_GIT:176
plant_trait_ontology
TO:0000885
Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts.
petiolule color
A petiolule morphology trait (TO:0000884) which is the color of the petiolule (PO:0020050).
PO:0020050
TO:moorel
A petiolule morphology trait (TO:0000884) which is the shape of the petiolule (PO:0020050).
moorel
2012-10-11T12:02:02Z
PATO:0000052
TO_GIT:176
plant_trait_ontology
TO:0000886
Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
petiolule shape
A petiolule morphology trait (TO:0000884) which is the shape of the petiolule (PO:0020050).
PO:0020050
TO:moorel
A petiolule morphology trait (TO:0000884) which is the length of the petiolule (PO:0020050).
moorel
2012-10-11T12:05:48Z
PATO:0000122
TO_GIT:176
plant_trait_ontology
TO:0000887
Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
petiolule length
A petiolule morphology trait (TO:0000884) which is the length of the petiolule (PO:0020050).
PO:0020050
TO:moorel
A seed coat morphology trait (TO:0000838) which is the luster of the seed coat (PO:0009088).
moorel
2012-10-11T12:26:54Z
TO_GIT:148
TO_GIT:76
plant_trait_ontology
TO:0000888
seed coat luster
A seed coat morphology trait (TO:0000838) which is the luster of the seed coat (PO:0009088).
PO:0009088
TO:moorel
A seed coat morphology trait (TO:0000838) which is the hardness of the seed coat (PO:0009088).
moorel
2012-10-11T12:29:15Z
PATO:0000048
TO_GIT:148
TO_GIT:76
plant_trait_ontology
TO:0000889
Refer to hardness (PATO:0000048): A physical quality inhering in a bearer by virtue of the bearer's disposition to being turned, bowed, or twisted without breaking.
seed coat hardness
A seed coat morphology trait (TO:0000838) which is the hardness of the seed coat (PO:0009088).
PO:0009088
TO:moorel
A seed coat morphology trait (TO:0000838) which is the relative proportion of seed coat (PO:0009088) to cotyledon (PO:0020030).
moorel
2012-10-11T12:32:02Z
PATO:0001470
TO_GIT:148
plant_trait_ontology
TO:0000890
Refer to proportion (PATO:0001470): A quality inhering in a bearer by virtue of the bearer's magnitude in respect to a related entity.
seed coat proportion
A seed coat morphology trait (TO:0000838) which is the relative proportion of seed coat (PO:0009088) to cotyledon (PO:0020030).
PO:0009088
PO:0020030
TO:moorel
A leaf weight trait (TO:0000505) which is the the measure of the wet weight of a leaf (PO:0025034).
moorel
2012-10-11T12:50:20Z
plant_trait_ontology
TO:0000891
leaf wet weight
A leaf weight trait (TO:0000505) which is the the measure of the wet weight of a leaf (PO:0025034).
PO:0025034
TO:moorel
A stem morphology trait (TO:0000361) which is the size of a stem (PO:0009047).
moorel
2012-11-20T15:35:42Z
PATO:0000117
TO_GIT:157
core size (narrow)
plant_trait_ontology
stalk size (related)
TO:0000892
Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.
stem size
A stem morphology trait (TO:0000361) which is the size of a stem (PO:0009047).
PO:0009047
TO:moorel
A stem morphology trait (TO:0000361) which is the shape of a stem (PO:0009047).
moorel
2012-11-20T15:44:05Z
PATO:0000052
TO_GIT:80
core shape (narrow)
plant_trait_ontology
TO:0000893
Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
stem shape
A stem morphology trait (TO:0000361) which is the shape of a stem (PO:0009047).
PO:0009047
TO:moorel
An infructescence morphology trait (TO:0000920) which is the number of fruits (PO:0009001).
moorel
2013-01-24T14:03:35Z
PATO:0001555
TO_GIT:178
accessory fruit number (narrow)
plant_trait_ontology
TO:0000894
Refer to has number of (PATO:0001555): The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts.
fruit number trait
An infructescence morphology trait (TO:0000920) which is the number of fruits (PO:0009001).
PO:0009001
TO:moorel
A harvest index (TO:0000128) which is the percent of usable fruit (PO:0009001).
moorel
2013-01-24T14:15:17Z
TO_GIT:179
plant_trait_ontology
TO:0000895
fruit harvest index
A harvest index (TO:0000128) which is the percent of usable fruit (PO:0009001).
PO:0009001
TO:moorel
A harvest index (TO:0000128) which is the percent of usable leaves (PO:0025034).
moorel
2013-01-24T14:19:38Z
TO_GIT:179
plant_trait_ontology
TO:0000896
leaf harvest index
A harvest index (TO:0000128) which is the percent of usable leaves (PO:0025034).
PO:0025034
TO:moorel
A harvest index (TO:0000128) which is the percent of usable seeds (PO:0009010).
moorel
2013-01-24T14:21:24Z
TO_GIT:179
plant_trait_ontology
TO:0000897
seed harvest index
A harvest index (TO:0000128) which is the percent of usable seeds (PO:0009010).
PO:0009010
TO:moorel
A cardinal organ part morphology trait (TO:0000754) which is a quality of a root nodule (PO:0003023).
moorel
2013-01-24T14:24:48Z
TO_GIT:181
plant_trait_ontology
TO:0000898
root nodule morphology trait
A cardinal organ part morphology trait (TO:0000754) which is a quality of a root nodule (PO:0003023).
PO:0003023
TO:moorel
A root nodule morphology trait (TO:0000898) which is the weight of a root nodule (PO:0003023).
moorel
2013-01-24T14:26:46Z
PATO:0000128
TO_GIT:181
plant_trait_ontology
TO:0000899
Refer to weight (PATO:0000128): A physical quality inhering in a bearer that has mass near a gravitational body.
root nodule weight
A root nodule morphology trait (TO:0000898) which is the weight of a root nodule (PO:0003023).
PO:0003023
TO:moorel
A root nodule morphology trait (TO:0000898) which is the number of root nodules (PO:0003023).
moorel
2013-01-24T14:30:27Z
PATO:0001555
TO_GIT:181
plant_trait_ontology
TO:0000900
Refer to has number of (PATO:0001555): The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts.
root nodule number
A root nodule morphology trait (TO:0000898) which is the number of root nodules (PO:0003023).
PO:0003023
TO:moorel
A fruit color (TO:0002617) which is the color of a fruit (PO:0009001) that has been dried.
moorel
2013-01-24T14:37:51Z
PATO:0000014
PATO:0001801
TO_GIT:180
dry pod color (narrow)
plant_trait_ontology
TO:0000901
Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. Refer to decreased water composition (PATO:0001801): A composition quality inhering in an bearer by virtue of the reduction in amount of water the bearer contains.
dry fruit color
A fruit color (TO:0002617) which is the color of a fruit (PO:0009001) that has been dried.
PO:0009001
TO:moorel
A seed coat morphology trait (TO:0000838) which is the bleeding of pigment in a seed coat (PO:0009088).
moorel
2013-01-24T14:44:11Z
TO_GIT:148
plant_trait_ontology
TO:0000902
seed coat pigment bleeding
A seed coat morphology trait (TO:0000838) which is the bleeding of pigment in a seed coat (PO:0009088).
PO:0009088
TO:moorel
A seed coat morphology trait (TO:0000838) which is the texture of a seed coat (PO:0009088).
moorel
2013-01-24T14:45:40Z
PATO:0000150
TO_GIT:147
plant_trait_ontology
TO:0000903
Refer to texture (PATO:0000150): A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics.
seed coat texture
A seed coat morphology trait (TO:0000838) which is the texture of a seed coat (PO:0009088).
PO:0009088
TO:moorel
A seed coat morphology trait (TO:0000838) which is the pattern of a seed coat (PO:0009088).
moorel
2013-01-24T14:48:21Z
PATO:0000019
TO_GIT:148
plant_trait_ontology
TO:0000904
Refer to color pattern (PATO:0000019): A chromatic property that is the relative position of different hues or degrees of saturation.
seed coat pattern
A seed coat morphology trait (TO:0000838) which is the pattern of a seed coat (PO:0009088).
PO:0009088
TO:moorel
A shoot system yield trait (TO:0000327) which is the yield of seeds (PO:0009010).
moorel
2013-01-28T13:14:23Z
TO_GIT:182
plant_trait_ontology
TO:0000905
seed yield trait
A shoot system yield trait (TO:0000327) which is the yield of seeds (PO:0009010).
PO:0009010
TO:cooperl
TO:moorel
A portion of plant tissue morphology trait (TO:0000843) which is a quality of the exocarp (PO:0009085).
cooperl
2013-04-28T15:48:43Z
TO_GIT:117
TO_GIT:295
epicarp morphology trait (exact)
plant_trait_ontology
TO:0000906
exocarp morphology trait
A portion of plant tissue morphology trait (TO:0000843) which is a quality of the exocarp (PO:0009085).
PO:cooperl
An exocarp morphology trait (TO:0000906) which is the thickness of the exocarp (PO:0009085).
cooperl
2013-04-28T16:05:01Z
PATO:0000915
TO_GIT:117
TO_GIT:295
rind thickness (exact)
plant_trait_ontology
TO:0000907
exocarp thickness
An exocarp morphology trait (TO:0000906) which is the thickness of the exocarp (PO:0009085).
TO:cooperl
A fruit morphology trait (TO:0002617) which is the hollowness of a fruit (PO:0009001).
cooperl
2013-04-28T16:18:53Z
TO_GIT:117
plant_trait_ontology
TO:0000908
fruit hollowness
A fruit morphology trait (TO:0002617) which is the hollowness of a fruit (PO:0009001).
PATO:0002078
PO:0009001
PO:cooperl
A fruit color trait (TO:0002617) which is the uniformity of the color (PATO:0000122) of the fruit (PO:0009001) .
cooperl
2013-04-28T16:33:44Z
TO_GIT:117
plant_trait_ontology
TO:0000909
The proportion of the 2D area of the red color epicarp out of the total epicarp area visible from a top view of the proximal fruit end.
fruit color uniformity
A fruit color trait (TO:0002617) which is the uniformity of the color (PATO:0000122) of the fruit (PO:0009001) .
PATO:0000122
PO:cooperl
A fruit flavor trait (TO:0002694) which is the bitter fruit flavor.
cooperl
2013-04-28T16:46:02Z
TO_GIT:117
plant_trait_ontology
TO:0000910
Need PATO quality: bitter - has been requested.
fruit bitterness trait
A fruit flavor trait (TO:0002694) which is the bitter fruit flavor.
TO:cooperl
A plant structure morphology trait (TO:0000839) which is a quality of a trichome (PO:0000282).
moorel
2013-06-18T14:29:56Z
TO_GIT:228
plant_trait_ontology
TO:0000911
trichome morphology trait
A plant structure morphology trait (TO:0000839) which is a quality of a trichome (PO:0000282).
PO:0000282
TO:moorel
A trichome morphology trait (TO:0000911) which is a trichome (PO:0000282) lying close to and flat against a surface of a plant structure (PO:0009011).
moorel
2013-06-18T14:31:49Z
TO_GIT:228
plant_trait_ontology
TO:0000912
trichome appressed
A trichome morphology trait (TO:0000911) which is a trichome (PO:0000282) lying close to and flat against a surface of a plant structure (PO:0009011).
PO:0000282
TO:moorel
A trichome morphology trait (TO:0000911) which is a needle-shaped trichome (PO:0000282).
moorel
2013-06-19T09:56:45Z
TO_GIT:228
plant_trait_ontology
TO:0000913
trichome acircular
A trichome morphology trait (TO:0000911) which is a needle-shaped trichome (PO:0000282).
PO:0000282
TO:moorel
A trichome morphology trait (TO:0000911) which is a gray-haired and hoary trichome (PO:0000282).
moorel
2013-06-19T09:59:44Z
TO_GIT:228
plant_trait_ontology
TO:0000914
trichome canescent
A trichome morphology trait (TO:0000911) which is a gray-haired and hoary trichome (PO:0000282).
PO:0000282
TO:moorel
A trichome morphology trait (TO:0000911) which is a very slender or hair-like trichome (PO:0000282).
moorel
2013-06-19T10:02:55Z
TO_GIT:228
plant_trait_ontology
TO:0000915
trichome capillary
A trichome morphology trait (TO:0000911) which is a very slender or hair-like trichome (PO:0000282).
PO:0000282
TO:moorel
A trichome morphology trait (TO:0000911) which is a club-shaped trichome (PO:0000282).
moorel
2013-06-19T10:06:59Z
TO_GIT:228
plant_trait_ontology
TO:0000916
Clavate (PATO:0001883): A concave 3-D shape quality inhering in a bearer by virtue of the bearer's gradually becoming thicker towards the end.
trichome clavate
A trichome morphology trait (TO:0000911) which is a club-shaped trichome (PO:0000282).
PO:0000282
TO:moorel
A trichome morphology trait (TO:0000911) which is a sword-shaped trichome (PO:0000282).
moorel
2013-06-19T10:14:01Z
TO_GIT:228
plant_trait_ontology
TO:0000917
Blade-like (PATO:0002235): A tapered shape quality inhering in a bearer by virtue of the bearer's being flat, slender, and tapering to a point. Synonym: ensiform.
trichome ensiform
A trichome morphology trait (TO:0000911) which is a sword-shaped trichome (PO:0000282).
PO:0000282
TO:moorel
A trichome morphology trait (TO:0000911) which is a rough trichome (PO:0000282).
moorel
2013-06-19T10:18:46Z
TO_GIT:228
plant_trait_ontology
TO:0000918
trichome hirsute
A trichome morphology trait (TO:0000911) which is a rough trichome (PO:0000282).
PO:0000282
TO:moorel
A caryopsis fruit morphology trait (TO:0001079) which is the weight of a caryopsis fruit (grain or kernel; PO:0030104).
cooperl
2013-11-14T14:06:21Z
TO_GIT:242
GRWT (exact)
caryopsis fruit weight (exact)
kernel weight (exact)
20 kernel weight (narrow)
plant_trait_ontology
kwt (related)
TO:0000919
Grain weight (TO:0000919) is a general parent term, covering the weights of various types of caryopsis fruits (PO:0030104), and doesn't specify if they are hulled or dehulled.
grain weight
A caryopsis fruit morphology trait (TO:0001079) which is the weight of a caryopsis fruit (grain or kernel; PO:0030104).
TO:cooperl
kwt (related)
MaizeGDB:78154
A reproductive shoot system morphology trait (TO:0000786) which is a quality of the infructescence (PO:0006342).
cooperl
2013-11-15T13:32:29Z
TO_GIT:244
plant_trait_ontology
TO:0000920
infructescence morphology trait
A reproductive shoot system morphology trait (TO:0000786) which is a quality of the infructescence (PO:0006342).
TO:cooperl
A shoot axis morphology trait (TO:0000739) which is a quality of an infructescence axis (PO:0025242).
cooperl
2013-11-15T15:54:24Z
TO_GIT:243
plant_trait_ontology
TO:0000921
infructescence axis morphology trait
A shoot axis morphology trait (TO:0000739) which is a quality of an infructescence axis (PO:0025242).
TO:cooperl
An infructescence axis morphology trait (TO:0000921) which is the weight of a cob.
moorel
2014-01-07T12:48:27Z
PATO:0000125
TO_GIT:109
plant_trait_ontology
TO:0000922
Refers to mass (PATO:0000125) A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter.
cob weight
An infructescence axis morphology trait (TO:0000921) which is the weight of a cob.
TO:moorel
An ear infructescence morphology trait (TO:0000976) that is the weight of an ear infructescence (PO:0025597).
cooperl
2013-12-10T20:53:38Z
MaizeGDB_QTL:65408
PATO:0000125
TO_GIT:244
plant_trait_ontology
earwt (related)
TO:0000923
Refers to mass (PATO:0000125): A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter.
ear weight
An ear infructescence morphology trait (TO:0000976) that is the weight of an ear infructescence (PO:0025597).
TO:cooperl
earwt (related)
MaizeGDB:???
An infructescence axis morphology trait (TO:0000921) which is the color of a cob.
moorel
2014-01-07T12:50:18Z
PATO:0000014
TO_GIT:109
plant_trait_ontology
cobpig (related)
TO:0000924
Refers to color (PATO:0000014) A composite chromatic quality composed of hue, saturation and intensity parts.
cob color
An infructescence axis morphology trait (TO:0000921) which is the color of a cob.
TO:moorel
cobpig (related)
MaizeGDB_QTL:67275
A leaf morphology trait (TO:0000748) which is a quality of a non-vascular leaf (PO:0025075).
moorel
2014-01-07T13:45:07Z
TO_GIT:246
plant_trait_ontology
TO:0000925
non-vascular leaf morphology trait
A leaf morphology trait (TO:0000748) which is a quality of a non-vascular leaf (PO:0025075).
PO:0025075
TO:moorel
A plant structure growth and development trait (TO:0000928) that has as primary participant a multi-tissue plant structure (PO:0025496).
cooperl
2014-01-16T12:55:32Z
TO_GIT:250
plant_trait_ontology
TO:0000926
multi-tissue plant structure growth and development trait
A plant structure growth and development trait (TO:0000928) that has as primary participant a multi-tissue plant structure (PO:0025496).
TO:cooperl
A multi-tissue plant structure development trait (TO:0000927) that has as primary participant a plant organ (PO:0009008).
cooperl
2014-01-16T12:57:38Z
TO_GIT:251
plant_trait_ontology
TO:0000927
plant organ growth and development trait
A multi-tissue plant structure development trait (TO:0000927) that has as primary participant a plant organ (PO:0009008).
TO:cooperl
A plant growth and development trait (TO:0000357) which is a quality of a plant structure development stage (PO:0009028).
cooperl
2014-01-16T13:36:38Z
TO_GIT:252
plant_trait_ontology
TO:0000928
plant structure growth and development trait
A plant growth and development trait (TO:0000357) which is a quality of a plant structure development stage (PO:0009028).
TO:cooperl
A multi-tissue plant structure development trait (TO:0000927) that has as primary participant a fruit (PO:0009001).
cooperl
2014-01-16T14:38:50Z
TO_GIT:255
plant_trait_ontology
TO:0000929
fruit growth and development trait
A multi-tissue plant structure development trait (TO:0000927) that has as primary participant a fruit (PO:0009001).
TO:cooperl
A seed growth and development trait (TO:0000653) which is the extent of seed shattering based on the development of an abscission zone (PO:0000146).
moorel
2014-01-21T10:24:42Z
TO_GIT:249
plant_trait_ontology
hilum abscission (related)
TO:0000930
seed shattering
A seed growth and development trait (TO:0000653) which is the extent of seed shattering based on the development of an abscission zone (PO:0000146).
PO:0000146
TO:moorel
hilum abscission (related)
SOY:0001341
A plant quality trait (TO:0000597) which is the commercial and /or economical value of a seed (PO:0009010) , or its overall improvement.
cooperl
2014-03-17T11:41:08Z
TO_GIT:209
plant_trait_ontology
TO:0000931
seed quality trait
A plant quality trait (TO:0000597) which is the commercial and /or economical value of a seed (PO:0009010) , or its overall improvement.
TO:cooperl
A hexose content trait (TO:0000307) which is the amount of mannose (CHEBI:37684).
cooperl
2014-04-30T11:28:13Z
TO_GIT:259
D-mannose content (narrow)
plant_trait_ontology
man content (related)
TO:0000932
mannose content
A hexose content trait (TO:0000307) which is the amount of mannose (CHEBI:37684).
TO:cooperl
A growth and development trait (TO:0000357) which is the timing of the occurrence of plant structure development stages (PO:0009012) and the relevant biological processes (GO:0008150).
cooperl
2014-05-05T17:32:19Z
TO_GIT:266
plant_trait_ontology
TO:0000933
plant phenological trait
A growth and development trait (TO:0000357) which is the timing of the occurrence of plant structure development stages (PO:0009012) and the relevant biological processes (GO:0008150).
TO:cooperl
A flowering time trait (TO:0002616) which is the difference between the time to flowering stage (PO:0007616) in long photoperiod (PECO:0007199) and short photoperiod (PECO:0007200) environments.
cooperl
2014-05-06T16:41:00Z
MaizeGDB_QTL:64797
TO_GIT:265
flowering time response to photoperiod trait (exact)
plant_trait_ontology
TO:0000934
photoperiod-sensitive flowering time trait
A flowering time trait (TO:0002616) which is the difference between the time to flowering stage (PO:0007616) in long photoperiod (PECO:0007199) and short photoperiod (PECO:0007200) environments.
TO:cooperl
A grain weight (TO:0000919) which is the total weight of all kernels on the primary ear infructescence (PO:0025597).
cooperl
2014-06-27T08:27:30Z
OBO_S2F_TO:280
plant_trait_ontology
TO:0000935
kernel weight per ear
A grain weight (TO:0000919) which is the total weight of all kernels on the primary ear infructescence (PO:0025597).
MaizeGDB:Mary_Schaeffer
TO:cooperl
A shoot system yield trait (TO:0000327) which is a quality of an infructescence (PO:0006342), or the number born on a plant.
cooperl
2014-09-02T16:37:45Z
TO_GIT:285
plant_trait_ontology
seeds per panicle (related)
TO:0000936
infructescence yield trait
A shoot system yield trait (TO:0000327) which is a quality of an infructescence (PO:0006342), or the number born on a plant.
TO:cooperl
An infructescence yield trait (TO:0000936) that is the number of kernels (fruit; PO:0009001) per ear infructescence (PO:0025597).
cooperl
2014-09-02T17:16:07Z
MaizeGDB_QTL:99383
TO_GIT:283
plant_trait_ontology
TO:0000937
Often calculated as the number of kernel rows in the middle of the ear times number of kernels per row. Also calculated based on total weight of kernels for an ear and average weight/kernel (Hung et al 2012).
kernel number per ear
An infructescence yield trait (TO:0000936) that is the number of kernels (fruit; PO:0009001) per ear infructescence (PO:0025597).
PMID:22027895
TO:cooperl
An infructescence yield trait (TO:0000936) that is the number of kernels (fruit; PO:0009001) per row on an ear infructescence (PO:0025597).
cooperl
2014-09-02T18:07:39Z
MaizeGDB_QTL:78114
TO_GIT:284
plant_trait_ontology
TO:0000938
kernel number per row
An infructescence yield trait (TO:0000936) that is the number of kernels (fruit; PO:0009001) per row on an ear infructescence (PO:0025597).
TO:cooperl
An inflorescence axis length (TO:0001072) which is the length of the first order tassel inflorescence axis (PO:0006324) from the most distal branch point to the tip of the tassel inflorescence (PO:0020126).
cooperl
2014-09-08T11:52:52Z
TO_GIT:272
first order tassel inflorescence axis length (exact)
plant_trait_ontology
TO:0000939
tassel spike length
An inflorescence axis length (TO:0001072) which is the length of the first order tassel inflorescence axis (PO:0006324) from the most distal branch point to the tip of the tassel inflorescence (PO:0020126).
PMID:28373892
TO:cooperl
An inflorescence axis length (TO:0001072) which is the length of the first order tassel inflorescence axis (PO:0006324) where the tassel inflorescence branches (PO:0006323) arise.
cooperl
2014-09-08T11:53:39Z
TO_GIT:272
plant_trait_ontology
TO:0000940
tassel branch zone length
An inflorescence axis length (TO:0001072) which is the length of the first order tassel inflorescence axis (PO:0006324) where the tassel inflorescence branches (PO:0006323) arise.
PMID:28373892
TO:cooperl
An infructescence yield trait (TO:0000936) which is the number of ranks of cupules per ear infructescence (PO:0025597).
cooperl
2014-09-08T14:05:22Z
MaizeGDB_QTL:65770
TO_GIT:288
plant_trait_ontology
TO:0000941
Used to look at QTL traits in crosses between Teosinte and maize. In order to compare the two types of ears, the kernel row number (TO:0000687; maize) is divided by two.
rank number per ear
An infructescence yield trait (TO:0000936) which is the number of ranks of cupules per ear infructescence (PO:0025597).
TO:cooperl
A portion of plant tissue morphology trait (TO:0000843) which is the qualities of the aleurone layer (PO:0005360).
cooperl
2015-07-21T15:15:42Z
TO_GIT:291
plant_trait_ontology
TO:0000942
aleurone layer morphology trait
A portion of plant tissue morphology trait (TO:0000843) which is the qualities of the aleurone layer (PO:0005360).
TO:cooperl
An aleurone layer appearance (TO:0000944) that is the color of the aleurone layer (PO:0005360).
cooperl
2015-07-21T15:16:24Z
PATO:0000014
TO_GIT:291
plant_trait_ontology
TO:0000943
aleurone layer color
An aleurone layer appearance (TO:0000944) that is the color of the aleurone layer (PO:0005360).
TO:cooperl
An aleurone layer morphology trait (TO:0000942) that is the appearance of the aleurone layer (PO:0005360).
cooperl
2015-07-21T16:08:50Z
TO_GIT:291
plant_trait_ontology
TO:0000944
aleurone layer appearance
An aleurone layer morphology trait (TO:0000942) that is the appearance of the aleurone layer (PO:0005360).
TO:cooperl
A portion of plant tissue morphology trait (TO:0000843) which is a quality of the pericarp (PO:0009084).
cooperl
2015-07-22T15:54:55Z
TO_GIT:292
plant_trait_ontology
TO:0000945
pericarp morphology trait
A portion of plant tissue morphology trait (TO:0000843) which is a quality of the pericarp (PO:0009084).
TO:cooperl
A portion of plant tissue morphology trait (TO:0000843) which is a quality of the endocarp (PO:0009086).
austinmeier
2015-07-22T17:16:05Z
TO_GIT:293
plant_trait_ontology
TO:0000946
endocarp morphology trait
A portion of plant tissue morphology trait (TO:0000843) which is a quality of the endocarp (PO:0009086).
TO:austin_meier
A plant structure growth and development trait (TO:0000928) which is a quality of a whole plant development stage (PO:0007033).
johnseth
2015-07-23T14:28:41Z
TO_GIT:297
plant_trait_ontology
TO:0000947
whole plant growth and development trait
A plant structure growth and development trait (TO:0000928) which is a quality of a whole plant development stage (PO:0007033).
TO:ethan_johnson
A portion of plant tissue morphology trait (TO:0000843) which is a quality of a mesocarp (PO:0009087).
austinmeier
2015-07-22T17:28:39Z
TO_GIT:294
plant_trait_ontology
TO:0000948
mesocarp morphology trait
A portion of plant tissue morphology trait (TO:0000843) which is a quality of a mesocarp (PO:0009087).
TO:austin_meier
A whole plant growth and development trait (TO:0000947) which is a quality of a seedling development stage (PO:0007131).
johnseth
2015-07-23T14:39:53Z
TO_GIT:298
plant_trait_ontology
TO:0000949
seedling growth and development trait
A whole plant growth and development trait (TO:0000947) which is a quality of a seedling development stage (PO:0007131).
TO:ethan_johnson
A collective phyllome structure morphology trait (TO:0000845) that is a quality of a corolla (PO:0009059).
cooperl
2015-07-27T14:48:47Z
TO_GIT:299
plant_trait_ontology
TO:0000950
corolla morphology trait
A collective phyllome structure morphology trait (TO:0000845) that is a quality of a corolla (PO:0009059).
TO:cooperl
A corolla morphology trait (TO:0000950) that is the color of a corolla (PO:0009059).
cooperl
2015-07-27T15:41:16Z
PATO:0000014
TO_GIT:299
plant_trait_ontology
TO:0000951
corolla color
A corolla morphology trait (TO:0000950) that is the color of a corolla (PO:0009059).
TO:cooperl
A stem morphology trait (TO:0000361) which is the weight of a stem (PO:0009047).
cooperl
2015-08-27T15:05:35Z
PATO:0000128
TO_GIT:157
stalk weight (narrow)
plant_trait_ontology
TO:0000952
stem weight
A stem morphology trait (TO:0000361) which is the weight of a stem (PO:0009047).
TO:cooperl
A shoot system morphology trait (TO:0000077) which is the number of stems (PO:0009047).
johnseth
2015-08-27T16:03:16Z
PATO:0001555
TO_GIT:57
stalk number (narrow)
plant_trait_ontology
TO:0000953
stem number
A shoot system morphology trait (TO:0000077) which is the number of stems (PO:0009047).
TO:cooperl
An inflorescence branch morphology trait (TO:0000784) which is a quality of a spikelet rachilla (PO:0009080).
johnseth
2015-10-19T14:35:34Z
PATO:0000051
TO_GIT:106
plant_trait_ontology
TO:0000954
spikelet rachilla morphology trait
An inflorescence branch morphology trait (TO:0000784) which is a quality of a spikelet rachilla (PO:0009080).
TO:Ethan_Johnson
A metabolite content related trait (TO:0000281) which is the amount of cyanide (CHEBI:17514) occurring in a plant structure (PO:0009011).
CHEBI:17514
plant_trait_ontology
TO:0000955
cyanide content
A metabolite content related trait (TO:0000281) which is the amount of cyanide (CHEBI:17514) occurring in a plant structure (PO:0009011).
TO:cooperl
An infructescence axis morphology trait (TO:0000921) which is the shape of a cob.
johnseth
2015-09-01T14:35:54Z
PATO:0000052
TO_GIT:109
plant_trait_ontology
TO:0000958
cob shape
An infructescence axis morphology trait (TO:0000921) which is the shape of a cob.
TO:ejohnson
An infructescence axis morphology trait (TO:0000921) which is the length of a cob.
johnseth
2015-09-01T14:44:47Z
PATO:0000122
TO_GIT:109
plant_trait_ontology
TO:0000959
cob length
An infructescence axis morphology trait (TO:0000921) which is the length of a cob.
TO:ejohnson
An infructescence axis morphology trait (TO:0000921) which is the width of a cob.
johnseth
2015-09-01T14:51:33Z
PATO:0000921
TO_GIT:109
plant_trait_ontology
TO:0000960
cob width
An infructescence axis morphology trait (TO:0000921) which is the width of a cob.
TO:ejohnson
An infructescence axis morphology trait (TO:0000921) which is the area of a cob.
johnseth
2015-09-01T15:00:53Z
PATO:0001323
TO_GIT:109
plant_trait_ontology
TO:0000961
cob area
An infructescence axis morphology trait (TO:0000921) which is the area of a cob.
TO:ejohnson
An infructescence axis morphology trait (TO:0000921) which is the angle of a cob.
johnseth
2015-09-01T15:15:37Z
PATO:0002326
TO_GIT:109
plant_trait_ontology
TO:0000962
cob angle
An infructescence axis morphology trait (TO:0000921) which is the angle of a cob.
TO:ejohnson
An ear infructescence morphology trait (TO:0000976) which is the color of an ear infructescence (PO:0025597).
johnseth
2015-09-01T15:52:16Z
PATO:0000014
TO_GIT:132
ear infructescence color (exact)
plant_trait_ontology
TO:0000963
ear color
An ear infructescence morphology trait (TO:0000976) which is the color of an ear infructescence (PO:0025597).
TO:Ethan_Johnson
An ear infructescence morphology trait (TO:0000976) which is the shape of an ear infructescence (PO:0025597).
johnseth
2015-09-01T16:07:23Z
PATO:0000052
TO_GIT:132
ear infructescence shape (exact)
plant_trait_ontology
TO:0000964
ear shape
An ear infructescence morphology trait (TO:0000976) which is the shape of an ear infructescence (PO:0025597).
TO:Ethan_Johnson
An ear infructescence morphology trait (TO:0000976) which is the qualitative rating of the harvested ear infructescence (PO:0025597).
johnseth
2015-09-01T16:12:33Z
TO_GIT:132
ear infructescence aspect (exact)
plant_trait_ontology
TO:0000965
ear aspect
An ear infructescence morphology trait (TO:0000976) which is the qualitative rating of the harvested ear infructescence (PO:0025597).
TO:Ethan_Johnson
An ear infructescence morphology trait (TO:0000976) which is the ratio of ear infructescence position (TO:0000683) to plant height (TO:0000207).
johnseth
2015-09-01T16:17:13Z
TO_GIT:132
plant_trait_ontology
ear position ratio (related)
TO:0000966
ear infructescence position ratio
An ear infructescence morphology trait (TO:0000976) which is the ratio of ear infructescence position (TO:0000683) to plant height (TO:0000207).
TO:Ethan_Johnson
TO:cooperl
A seed morphology trait (TO:0000184) which is a quality of a hilum (PO:0020063).
meiera
2015-10-13T11:16:35Z
TO_GIT:81
plant_trait_ontology
TO:0000967
hilum morphology trait
A seed morphology trait (TO:0000184) which is a quality of a hilum (PO:0020063).
TO:austin_meier
A hilum morphology trait (TO:0000967) which is the color of a hilum (PO:0020063).
meiera
2015-10-13T11:19:20Z
TO_GIT:81
plant_trait_ontology
TO:0000968
hilum color
A hilum morphology trait (TO:0000967) which is the color of a hilum (PO:0020063).
TO:austin_meier
An inflorescence morphology trait (TO:0000373) which is a quality of an ear inflorescence (PO:0020136).
cooperl
2015-10-16T14:24:59Z
TO_GIT:97
plant_trait_ontology
TO:0000969
ear inflorescence morphology trait
An inflorescence morphology trait (TO:0000373) which is a quality of an ear inflorescence (PO:0020136).
TO:cooperl
An inflorescence density (TO:0000800) trait which is a quality of a panicle inflorescence (PO:0030123).
cooperl
2015-10-16T15:23:56Z
TO_GIT:97
plant_trait_ontology
TO:0000970
panicle density
An inflorescence density (TO:0000800) trait which is a quality of a panicle inflorescence (PO:0030123).
TO:cooperl
An inflorescence morphology trait (TO:0000373) which is the presence or absence of hairs on an inflorescence (PO:0009049).
cooperl
2015-10-16T15:53:14Z
PATO:0000454
TO_GIT:97
head hairiness (narrow)
plant_trait_ontology
TO:0000971
inflorescence hairiness
An inflorescence morphology trait (TO:0000373) which is the presence or absence of hairs on an inflorescence (PO:0009049).
TO:cooperl
An inflorescence branch morphology trait (TO:0000784) which is the length of a spikelet rachilla (PO:0009080).
johnseth
2015-10-19T14:40:20Z
rachilla length (broad)
PATO:0000122
TO_GIT:106
plant_trait_ontology
TO:0000972
spikelet rachilla length
An inflorescence branch morphology trait (TO:0000784) which is the length of a spikelet rachilla (PO:0009080).
TO:Ethan_Johnson
An inflorescence branch morphology trait (TO:0000784) which is the shape of a spikelet rachilla (PO:0009080).
johnseth
2015-10-19T14:46:04Z
rachilla shape (broad)
PATO:0000052
TO_GIT:106
plant_trait_ontology
TO:0000973
spikelet rachilla shape
An inflorescence branch morphology trait (TO:0000784) which is the shape of a spikelet rachilla (PO:0009080).
TO:Ethan_Johnson
An inflorescence branch morphology trait (TO:0000784) which is the pubescence of a spikelet rachilla (PO:0009080).
johnseth
2015-10-19T14:47:51Z
rachilla hair type (broad)
PATO:0000454
TO_GIT:106
plant_trait_ontology
TO:0000974
spikelet rachilla hair type
An inflorescence branch morphology trait (TO:0000784) which is the pubescence of a spikelet rachilla (PO:0009080).
TO:Ethan_Johnson
A caryopsis fruit morphology trait (TO:0001079) which is the width of a grain (PO:0009001).
meiera
2015-10-20T15:15:19Z
caryopsis width (exact)
kernel width (exact)
plant_trait_ontology
TO:0000975
grain width
A caryopsis fruit morphology trait (TO:0001079) which is the width of a grain (PO:0009001).
TO:austin_meier
TO:cooperl
An infructescence morphology trait (TO:0000920) which is a quality of the ear infructescence (PO:0025597).
johnseth
2015-10-22T09:35:32Z
TO_GIT:132
TO_GIT:144
plant_trait_ontology
TO:0000976
ear infructescence morphology trait
An infructescence morphology trait (TO:0000920) which is a quality of the ear infructescence (PO:0025597).
TO:Ethan_Johnson
A leaf area trait (TO:0000540) that is the size of the total surface area of a leaf (PO:0025034).
johnseth
2015-10-23T10:29:59Z
TO_GIT:139
plant_trait_ontology
TO:0000977
Comment: rating scale of 3, small; 5, intermediate; 7 large
leaf foliage rating
A leaf area trait (TO:0000540) that is the size of the total surface area of a leaf (PO:0025034).
TO:Ethan_Johnson
A glume morphology trait (TO:0000869) with is the shape of a glume (PO:0009039).
johnseth
2015-10-23T10:46:05Z
TO_GIT:166
plant_trait_ontology
TO:0000978
glume shape
A glume morphology trait (TO:0000869) with is the shape of a glume (PO:0009039).
TO:Ethan_Johnson
A collective phyllome structure morphology trait (TO:0000845) that is a quality of an involucre (PO:0009100).
johnseth
2015-11-02T15:02:56Z
TO_GIT:153
plant_trait_ontology
TO:0000979
involucre morphology trait
A collective phyllome structure morphology trait (TO:0000845) that is a quality of an involucre (PO:0009100).
TO:Ethan_Johnson
A plant embryo cotyledon morphology trait (TO:0000775) which is the color of the plant embryo cotyledon (PO:0025470).
TO_austin_meier
GIT_TO:353
plant embryo cotyledon colour (exact)
plant_trait_ontology
TO:0000980
plant embryo cotyledon color
A plant embryo cotyledon morphology trait (TO:0000775) which is the color of the plant embryo cotyledon (PO:0025470).
PATO:0000014
A collective plant organ structure morphology trait (TO:0000842) which is a quality of a root system (PO:0025025).
Ethan_Johnson
TO_GIT:359
plant_trait_ontology
TO:0000985
root system morphology trait
A collective plant organ structure morphology trait (TO:0000842) which is a quality of a root system (PO:0025025).
ethan_johnson
PO:0025025
A flower number trait (TO:0002736) which is the number of staminate flowers (PO:0025600).
ethan_johnson
PATO:0001555
TO_GIT:356
male flower number trait (exact)
plant_trait_ontology
TO:0000986
staminate flower number trait
A flower number trait (TO:0002736) which is the number of pistillate flowers (PO:0025599).
ethan_johnson
PATO:0001555
TO_GIT:356
female flower number trait (exact)
plant_trait_ontology
TO:0000987
pistillate flower number trait
A shoot system morphology trait (TO:0000077) that is a quality of a shoot-borne shoot system (PO:0004545).
ethan_johnson
TO_GIT:332
plant_trait_ontology
TO:0000988
shoot-borne shoot system morphology trait
A shoot-borne shoot system morphology trait (TO:0000988) that is a quality of an epicormic shoot system (PO:0004546).
ethan_johnson
TO_GIT:332
plant_trait_ontology
TO:0000989
epicormic shoot system morphology trait
A seed morphology trait (TO:0000184) which is the hardness of a seed (PO:0009010).
ethan_johnson
PATO:0000048
plant_trait_ontology
TO:0000990
seed hardness
A seed morphology trait (TO:0000184) which is the hardness of a seed (PO:0009010).
TO:cooperl
An epicormic shoot system morphology trait (TO:0000989) which is the number of epicormic shoot systems (PO:0004546).
ethan_johnson
TO_GIT:332
stem sucker number (exact)
plant_trait_ontology
TO:0000991
epicormic shoot system number
A biological process trait (TO:0000283) which is a quality of a gibberellin biosynthetic process (GO:0009686).
ethan_johnson
gibberellin biosynthesis (broad)
TO_GIT:383
plant_trait_ontology
TO:0000992
Refers to gibberellin (CHEBI:24250)
gibberellin biosynthesis trait
A carbohydrate content trait (TO:0000291) which is the amount of cellulose (CHEBI:62968) in a plant structure (PO:0009011).
ethan_johnson
TO_GIT:384
plant_trait_ontology
TO:0000993
Refers to crystalline cellulose (CHEBI:62968): A (1→4)-β-D-glucan (cellulose) in crystalline form with a structure consisting of several hundred to over ten thousand D-glucose residues joined by β(1→4) glycosidic linkages.
cellulose content
A carbohydrate content trait (TO:0000291) which is the amount of cellulose (CHEBI:62968) in a plant structure (PO:0009011).
TO:cooperl
A collective phyllome structure morphology trait (TO:0000845) that is a quality of the androecium (PO:0009061).
ethan_johnson
TO_GIT:386
plant_trait_ontology
TO:0000994
androecium morphology trait
A collective phyllome structure morphology trait (TO:0000845) that is a quality of the androecium (PO:0009061).
PO:0009061
TO:cooperl
A mineral and ion content trait (TO:0000465) which is the aluminium cation (CHEBI:63062) composition in a plant structure (PO:0009011).
TO_GIT:412
Al content (exact)
aluminium content (exact)
plant_trait_ontology
TO:0000995
aluminum content trait
A mineral and ion content trait (TO:0000465) which is the aluminium cation (CHEBI:63062) composition in a plant structure (PO:0009011).
TO:cooperl
A flag leaf anatomy and morphology trait (TO:0000832) which is the area of a flag leaf (PO:0020103).
2017-07-10T10:36:57Z
TO_GIT:415
plant_trait_ontology
TO:0000996
flag leaf area
A flag leaf anatomy and morphology trait (TO:0000832) which is the area of a flag leaf (PO:0020103).
PMID:25785447
PMID:26841834
TO:cooperl
A grain length (TO:0000734) measured on a dehulled, polished grain.
2017-07-10T10:36:57Z
TO_GIT:415
white rice grain length (narrow)
plant_trait_ontology
TO:0000997
polished grain length
A grain length (TO:0000734) measured on a dehulled, polished grain.
PMID:26842267
TO:cooperl
A grain width (TO:0000975) which is the width of the dehulled, polished grain.
2017-07-10T10:36:57Z
TO_GIT:415
white rice grain width (narrow)
plant_trait_ontology
TO:0000998
polished grain width
A grain width (TO:0000975) which is the width of the dehulled, polished grain.
PMID:26842267
TO:cooperl
A grain length to width ratio (TO:0002731) measured on a dehulled, polished grain.
2017-07-10T10:36:57Z
TO_GIT:415
white rice grain length to width ratio (narrow)
plant_trait_ontology
TO:0000999
polished grain length to width ratio
A grain length to width ratio (TO:0002731) measured on a dehulled, polished grain.
TO:cooperl
A glume morphology trait (TO:0000869) which is amount the glume (PO:0009039) covers the caryopsis. Often measured as percentage.
plant_trait_ontology
TO:0001000
glume cover
A glume morphology trait (TO:0000869) which is amount the glume (PO:0009039) covers the caryopsis. Often measured as percentage.
Gramene:pankaj_jaiswal
PO:0009039
TO:moorel
A glume morphology trait (TO:0000869) which is the persistence of a glume (PO:0009039).
PATO:0000082
plant_trait_ontology
TO:0001001
Measured as percentage of kernels or seeds carrying the glume after threshing. In a normal setup the seeds do not have glumes after the threshing process.
Refer to persistence (PATO:0000082): A rhythm quality inhering in a bearer by virtue of the repetitiveness of bearer's rhythm.
glume persistence
A glume morphology trait (TO:0000869) which is the persistence of a glume (PO:0009039).
Gramene:pankaj_jaiswal
PO:0009039
TO:moorel
An inflorescence morphology trait (TO:0000373) which is the exsertion of an inflorescence (PO:0009049).
TO_GIT:97
plant_trait_ontology
TO:0001002
inflorescence exsertion
An inflorescence morphology trait (TO:0000373) which is the exsertion of an inflorescence (PO:0009049).
PO:0009049
TO:moorel
A visual estimate of the plant height for a group of plants in an experiment.
plant_trait_ontology
TO:0001003
plant height uniformity
A visual estimate of the plant height for a group of plants in an experiment.
Gramene:pankaj_jaiswal
Number of basal tillers per plant, should represent most plants within a study.
plant_trait_ontology
basal axillary shoot number (related)
TO:0001004
basal tiller number
Number of basal tillers per plant, should represent most plants within a study.
Gramene:pankaj_jaiswal
The height of the tallest basal tiller (basal axillary shoot) of a plant.
plant_trait_ontology
basal tiller height (related)
TO:0001005
basal tiller length
The height of the tallest basal tiller (basal axillary shoot) of a plant.
Gramene:pankaj_jaiswal
A root number (TO:0000084) trait which is the number of adventitious roots (shoot-borne root; PO:0000042).
plant_trait_ontology
TO:0001006
Adventitious root can be a 'shoot-borne root' (PO:0000042) or one of the child terms- all have adventitious root as a broad synonym. Shoot-borne roots are part of the root system (PO:0025025).
adventitious root number
A root number (TO:0000084) trait which is the number of adventitious roots (shoot-borne root; PO:0000042).
Gramene:pankaj_jaiswal
TO:cooperl
A coleoptile morphology trait (TO:0000753) which is the length of a coleoptile (PO:0020033).
PATO:0000122
TO_GIT:62
plant_trait_ontology
TO:0001007
coleoptile length
A coleoptile morphology trait (TO:0000753) which is the length of a coleoptile (PO:0020033).
Gramene:pankaj_jaiswal
PO:0020033
TO:cooperl
In grass plants the number of days required for the full emergence of the flag leaf in a field or study. It can be counted from date of seed sowing or the transplant (in case of rice).
plant_trait_ontology
TO:0001008
days to flag leaf emergence
In grass plants the number of days required for the full emergence of the flag leaf in a field or study. It can be counted from date of seed sowing or the transplant (in case of rice).
Gramene:pankaj_jaiswal
A count of number of roots present below a given depth from the soil surface.
plant_trait_ontology
TO:0001009
deep root number
A count of number of roots present below a given depth from the soil surface.
Gramene:pankaj_jaiswal
Number of leaves in a plant that have undergone leaf senescence stage or are considered dead.
dead leaf number (narrow)
plant_trait_ontology
TO:0001010
senesced leaf number
Number of leaves in a plant that have undergone leaf senescence stage or are considered dead.
Gramene:pankaj_jaiswal
A ration of the deep root dry weight to total root dry weight per plant.
deep root dry weight to total root dry weight ratio (exact)
plant_trait_ontology
TO:0001011
deep root weight ratio
A ration of the deep root dry weight to total root dry weight per plant.
Gramene:pankaj_jaiswal
A root length (TO:0000227) that is the length of one or more lateral roots (PO:0020121).
GIT_TO:365
PATO:0000122
plant_trait_ontology
TO:0001012
Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
lateral root length
A root length (TO:0000227) that is the length of one or more lateral roots (PO:0020121).
Gramene:pankaj_jaiswal
TO:austin_meier
TO:seymour_megan
Average sum of number of lateral roots in a plant derived per experiment.
plant_trait_ontology
TO:0001013
lateral root number
Average sum of number of lateral roots in a plant derived per experiment.
Gramene:pankaj_jaiswal
A leaf weight trait (TO:0000505) which is the dry weight of a leaf (PO:0025034).
plant_trait_ontology
TO:0001014
leaf dry weight
A leaf weight trait (TO:0000505) which is the dry weight of a leaf (PO:0025034).
Gramene:pankaj_jaiswal
PO:0025034
TO:moorel
The total amount of carbon fixed by the plant per unit time and is measured by determining the changes in CO2 concentration over a plant leaf in a glass enclosure.
plant_trait_ontology
gross photosynthetic rate (related)
leaf photosynthetic rate (related)
TO:0001015
photosynthetic rate
The total amount of carbon fixed by the plant per unit time and is measured by determining the changes in CO2 concentration over a plant leaf in a glass enclosure.
Gramene:pankaj_jaiswal
A chlorophyll content trait (TO:0000495) which is the relative chlorophyll content of a plant structure (PO:0009011) after a treatment, as compared to that determined under normal growth conditions.
plant_trait_ontology
TO:0001016
relative chlorophyll content
A chlorophyll content trait (TO:0000495) which is the relative chlorophyll content of a plant structure (PO:0009011) after a treatment, as compared to that determined under normal growth conditions.
Gramene:pankaj_jaiswal
TO:cooperl
As determined by the ratio of photosynthetic rate to transpiration rate.
photosynthetic rate to transpiration rate ratio (exact)
plant_trait_ontology
TO:0001017
water use efficiency
As determined by the ratio of photosynthetic rate to transpiration rate.
Gramene:pankaj_jaiswal
The rate of transpiration.
GO:0010148
plant_trait_ontology
TO:0001018
transpiration rate
The rate of transpiration.
Gramene:pankaj_jaiswal
A ratio of root dry weight to total plant dry weight.
plant_trait_ontology
root dry weight to total plant dry weight ratio (related)
TO:0001019
root to total biomass ratio
A ratio of root dry weight to total plant dry weight.
Gramene:pankaj_jaiswal
Volume of the sap exudate collected from the cut parts of a plant.
plant_trait_ontology
Sap per tiller (related)
TO:0001020
exudate sap volume
Volume of the sap exudate collected from the cut parts of a plant.
Gramene:pankaj_jaiswal
Number of days required for the emergence of inflorescence to become visible on the plant.
plant_trait_ontology
days to inflorescence emergence (related)
TO:0001021
Often in grasses it emerges from the flag leaf whcih is the top most leaft on the shoot.
days to inflorescence exsertion
Number of days required for the emergence of inflorescence to become visible on the plant.
Gramene:pankaj_jaiswal
Number of days required for the tassel to emerge from the flag leaf in a maize plant or a group of plants in a study.
plant_trait_ontology
TO:0001022
Often determined when the 50% length of the tassel has emerged as compared to its full length. Number of days is calculated from the day of sowing of the seeds.
days to tassel emergence
Number of days required for the tassel to emerge from the flag leaf in a maize plant or a group of plants in a study.
Gramene:pankaj_jaiswal
Number of days required for the ear shoot to emerge from the given leaf sheath in a maize plant or a group of plants in a study.
plant_trait_ontology
TO:0001023
Often determined when the 50% length of the ear has emerged as compared to its full length. Number of days is calculated from the day of sowing of the seeds.
days to ear shoot emergence
Number of days required for the ear shoot to emerge from the given leaf sheath in a maize plant or a group of plants in a study.
Gramene:pankaj_jaiswal
A mineral and ion content trait (TO:0000465) which is the phosphorus cation (CHEBI:33467) composition in a plant structure (PO:0009011).
jaiswalp
plant_trait_ontology
PHOCN (related)
TO:0001024
phosphorus content
A mineral and ion content trait (TO:0000465) which is the phosphorus cation (CHEBI:33467) composition in a plant structure (PO:0009011).
Gramene:pankaj_jaiswal
TO:cooperl
Amount of phosphorus in the leaf.
plant_trait_ontology
LFPHOCN (related)
TO:0001025
Often measured in per unit dry weight.
leaf phosphorus content
Amount of phosphorus in the leaf.
Gramene:pankaj_jaiswal
The total amount of carbon lost metabolically by the plant per unit time and is measured by determining the increase in CO2 concentration over a plant leaf in a glass enclosure.
plant_trait_ontology
TO:0001026
respiration rate
The total amount of carbon lost metabolically by the plant per unit time and is measured by determining the increase in CO2 concentration over a plant leaf in a glass enclosure.
Gramene:pankaj_jaiswal
It is measured as the difference between gross photosynthesis (the total amount of carbon fixed by the plant per unit time) and the respiration (the total amount of carbon lost metabolically during that same time).
plant_trait_ontology
TO:0001027
net photosynthetic rate
It is measured as the difference between gross photosynthesis (the total amount of carbon fixed by the plant per unit time) and the respiration (the total amount of carbon lost metabolically during that same time).
Gramene:pankaj_jaiswal
Break point of leaf water potential in the regression of leaf water potential against leaf relative water content.
plant_trait_ontology
Break point of osmotic adjustment (related)
TO:0001028
osmotic adjustment break point
Break point of leaf water potential in the regression of leaf water potential against leaf relative water content.
CIRAD:Brigitte_Courtois
It is a ratio of harvest index in stress to that of control environment.
plant_trait_ontology
TO:0001029
relative harvest index
It is a ratio of harvest index in stress to that of control environment.
Gramene:pankaj_jaiswal
It is a ratio of leaf area determined from a stressed plant to that grown in normal environment.
plant_trait_ontology
TO:0001030
relative leaf area
It is a ratio of leaf area determined from a stressed plant to that grown in normal environment.
Gramene:pankaj_jaiswal
It is a ratio of leaf dry weight determined from a stressed plant to that grown in normal environment.
plant_trait_ontology
TO:0001031
relative leaf dry weight
It is a ratio of leaf dry weight determined from a stressed plant to that grown in normal environment.
Gramene:pankaj_jaiswal
A panicle number (TO:0000152) trait which is the ratio of panicle number determined from a stressed plant to that grown in normal environment.
plant_trait_ontology
TO:0001032
relative panicle number
A panicle number (TO:0000152) trait which is the ratio of panicle number determined from a stressed plant to that grown in normal environment.
Gramene:pankaj_jaiswal
TO:moorel
It is a ratio of spikelet number per panicle/inflorescence determined from a stressed plant to that grown in normal environment.
plant_trait_ontology
relative number of spikelet per panicle (related)
TO:0001033
relative spikelet number
It is a ratio of spikelet number per panicle/inflorescence determined from a stressed plant to that grown in normal environment.
Gramene:pankaj_jaiswal
It is a ratio of the plant height determined from a stressed plant to that grown in normal environment.
plant_trait_ontology
TO:0001034
relative plant height
It is a ratio of the plant height determined from a stressed plant to that grown in normal environment.
Gramene:pankaj_jaiswal
A stem morphology trait (TO:0000361) which is the width of a stem (PO:0009047).
PATO:0000921
plant_trait_ontology
culm diameter (related)
culm width (related)
TO:0001035
Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite.
stem width
A stem morphology trait (TO:0000361) which is the width of a stem (PO:0009047).
Gramene:cwt
PO:0009047
TO:moorel
OBSOLETE.
plant_trait_ontology
culm senescence (related)
TO:0001036
Please refer to stem senescence (TO:0020085)." [Gramene:cwt, TO:moorel]
OBSOLETE stem senescence
true
A yield trait (TO:0000371) which is the yield of roots (PO:0009005).
cooperl
plant_trait_ontology
TO:0001041
root yield
A yield trait (TO:0000371) which is the yield of roots (PO:0009005).
TO:cooperl
A plant quality trait (TO:0000597) which is the quality of roots (PO:0009005).
cooperl
plant_trait_ontology
TO:0001042
root quality trait
A plant quality trait (TO:0000597) which is the quality of roots (PO:0009005).
TO:cooperl
A mineral and ion content trait (TO:0000465) which is the barium cation (CHEBI:39125) composition in a plant structure (PO:0009011).
TO_GIT:412
Ba content (exact)
plant_trait_ontology
TO:0001043
barium content trait
A mineral and ion content trait (TO:0000465) which is the barium cation (CHEBI:39125) composition in a plant structure (PO:0009011).
TO:cooperl
A mineral and ion content trait (TO:0000465) which is the cobalt cation (CHEBI:23336) composition in a plant structure (PO:0009011).
TO_GIT:412
Co content (exact)
plant_trait_ontology
TO:0001044
cobalt content trait
A mineral and ion content trait (TO:0000465) which is the cobalt cation (CHEBI:23336) composition in a plant structure (PO:0009011).
TO:cooperl
A mineral and ion content trait (TO:0000465) which is the chromium cation (CHEBI:33516) composition in a plant structure (PO:0009011).
TO_GIT:412
Cr content (exact)
plant_trait_ontology
TO:0001045
chromium content trait
A mineral and ion content trait (TO:0000465) which is the chromium cation (CHEBI:33516) composition in a plant structure (PO:0009011).
TO:cooperl
A mineral and ion content trait (TO:0000465) which is the iodine cation (CHEBI:33116) composition in a plant structure (PO:0009011).
TO_GIT:412
I content (exact)
plant_trait_ontology
TO:0001046
iodine content trait
A mineral and ion content trait (TO:0000465) which is the iodine cation (CHEBI:33116) composition in a plant structure (PO:0009011).
TO:cooperl
A mineral and ion content trait (TO:0000465) which is the lead cation (CHEBI:30180) composition in a plant structure (PO:0009011).
TO_GIT:412
Pb content (exact)
plant_trait_ontology
TO:0001047
lead content trait
A mineral and ion content trait (TO:0000465) which is the lead cation (CHEBI:30180) composition in a plant structure (PO:0009011).
TO:cooperl
A mineral and ion content trait (TO:0000465) which is the silicon cation (CHEBI:30584) composition in a plant structure (PO:0009011).
TO_GIT:412
Si content (exact)
plant_trait_ontology
TO:0001048
silicon content trait
A mineral and ion content trait (TO:0000465) which is the silicon cation (CHEBI:30584) composition in a plant structure (PO:0009011).
TO:cooperl
A mineral and ion content trait (TO:0000465) which is the rubidium cation (CHEBI:49847) composition in a plant structure (PO:0009011).
TO_GIT:412
Rb content (exact)
plant_trait_ontology
TO:0001049
rubidium content trait
A mineral and ion content trait (TO:0000465) which is the rubidium cation (CHEBI:49847) composition in a plant structure (PO:0009011).
TO:cooperl
A mineral and ion content trait (TO:0000465) which is the strontium ion (CHEBI:39130) composition in a plant structure (PO:0009011).
TO_GIT:412
Sr content (exact)
plant_trait_ontology
TO:0001050
strontium content trait
A mineral and ion content trait (TO:0000465) which is the strontium ion (CHEBI:39130) composition in a plant structure (PO:0009011).
TO:cooperl
A root morphology trait (TO:0000043) which is the number of root hairs (GO:0035618) in a given surface area of a root (PO:0009005).
2017-07-14T10:36:57Z
TO_GIT:417
plant_trait_ontology
TO:0001051
root hair density
A root morphology trait (TO:0000043) which is the number of root hairs (GO:0035618) in a given surface area of a root (PO:0009005).
PMID:27294384
TO:cooperl
A portion of plant tissue morphology trait (TO:0000843) which is the cross-sectional area of the root cortex (PO:0000258).
2017-07-14T10:36:57Z
TO_GIT:417
plant_trait_ontology
TO:0001052
root cortex cross-sectional area
A portion of plant tissue morphology trait (TO:0000843) which is the cross-sectional area of the root cortex (PO:0000258).
PMID:27294384
TO:cooperl
A subterranean shoot axis tuber morphology trait (TO:0000742) which is the length of a subterranean shoot axis tuber (PO:0004547).
2017-11-29T10:36:57Z
TO_GIT:56
plant_trait_ontology
TO:0001053
Refers to length (PATO:0000122).
subterranean shoot axis tuber length
A subterranean shoot axis tuber morphology trait (TO:0000742) which is the length of a subterranean shoot axis tuber (PO:0004547).
TO:cooperl
A cardinal organ part morphology trait (TO:0000754) which is the cross-sectional area of the root stele (PO:0020124).
2017-07-14T10:36:57Z
TO_GIT:417
plant_trait_ontology
TO:0001054
root stele cross-sectional area
A cardinal organ part morphology trait (TO:0000754) which is the cross-sectional area of the root stele (PO:0020124).
PMID:27294384
TO:cooperl
A portion of plant tissue morphology trait (TO:0000843) which is the cross-sectional area of the root aerenchyma (PO:0006213).
2017-07-14T10:36:57Z
TO_GIT:417
plant_trait_ontology
TO:0001055
root aerenchyma cross-sectional area
A portion of plant tissue morphology trait (TO:0000843) which is the cross-sectional area of the root aerenchyma (PO:0006213).
PMID:27294384
TO:cooperl
A root morphology trait (TO:0000043) which is the cross sectional area of a root (PO:0009005).
2017-07-14T10:36:57Z
TO_GIT:417
plant_trait_ontology
TO:0001056
root cross sectional area
A root morphology trait (TO:0000043) which is the cross sectional area of a root (PO:0009005).
PMID:21454799
TO:cooperl
A root system morphology trait (TO:0000985) which is the width of the root system (PO:0025025).
2017-07-10T10:36:57Z
TO_GIT:417
plant_trait_ontology
TO:0001057
root system width
A root system morphology trait (TO:0000985) which is the width of the root system (PO:0025025).
PMID:21454799
TO:cooperl
A root system morphology trait (TO:0000985) which is the depth of the root system (PO:0025025).
2017-07-14T10:36:57Z
TO_GIT:417
plant_trait_ontology
TO:0001058
root system depth
A root system morphology trait (TO:0000985) which is the depth of the root system (PO:0025025).
PMID:21454799
TO:cooperl
A root system morphology trait (TO:0000985) which is the ratio of the root system width (TO:0001057) to root system depth (TO:0001058).
2017-07-14T10:36:57Z
TO_GIT:417
plant_trait_ontology
TO:0001059
root system width to depth ratio
A root system morphology trait (TO:0000985) which is the ratio of the root system width (TO:0001057) to root system depth (TO:0001058).
PMID:21454799
TO:cooperl
A subterranean shoot axis tuber morphology trait (TO:0000742) which is the width of a subterranean shoot axis tuber (PO:0004547).
2017-11-30T00:04:18Z
TO_GIT:56
plant_trait_ontology
TO:0001060
Refers to width (PATO:0000921).
subterranean shoot axis tuber width
A subterranean shoot axis tuber morphology trait (TO:0000742) which is the width of a subterranean shoot axis tuber (PO:0004547).
TO:cooperl
An inflorescence axis morphology trait (TO:0000782) which is the thickness of an inflorescence axis (PO:0020122).
2018-01-30T23:50:51Z
TO_GIT:419
rachis thickness (exact)
plant_trait_ontology
TO:0001061
inflorescence axis thickness
An inflorescence axis morphology trait (TO:0000782) which is the thickness of an inflorescence axis (PO:0020122).
PMID:26841834
TO:cooperl
A panicle inflorescence morphology trait (TO:0000847) which is the number of inflorescence axis internodes (PO:0006326) in a panicle inflorescence (PO:0030123).
2018-01-31T00:33:37Z
TO_GIT:419
plant_trait_ontology
TO:0001062
number of panicle internodes
A panicle inflorescence morphology trait (TO:0000847) which is the number of inflorescence axis internodes (PO:0006326) in a panicle inflorescence (PO:0030123).
PMID:26841834
TO:cooperl
A panicle inflorescence morphology trait (TO:0000847) which is the length of the inflorescence axis internodes (PO:0006326) in a panicle inflorescence (PO:0030123).
2018-01-31T00:43:58Z
TO_GIT:419
plant_trait_ontology
TO:0001063
panicle inflorescence internode length
A panicle inflorescence morphology trait (TO:0000847) which is the length of the inflorescence axis internodes (PO:0006326) in a panicle inflorescence (PO:0030123).
PMID:26841834
TO:cooperl
A panicle inflorescence morphology trait (TO:0000847) which is the average number of branches per inflorescence axis internode (PO:0006326) in a panicle inflorescence (PO:0030123).
2018-01-31T23:29:53Z
TO_GIT:419
plant_trait_ontology
TO:0001064
number of panicle inflorescence branches per internode
A panicle inflorescence morphology trait (TO:0000847) which is the average number of branches per inflorescence axis internode (PO:0006326) in a panicle inflorescence (PO:0030123).
PMID:26841834
TO:cooperl
A panicle inflorescence morphology trait (TO:0000847) which is the length of a terminal primary branch in a panicle inflorescence (PO:0030123).
2018-01-31T23:36:03Z
TO_GIT:419
plant_trait_ontology
TO:0001065
panicle inflorescence terminal primary branch length
A vascular tissue morphology trait (TO_0000470) which is the number of metaxylem vessels (PO:0025620).
2017-08-17T21:15:56Z
TO_GIT:421
plant_trait_ontology
TO:0001066
The number of metaxylem vessels (PO:0025620) may be counted in a cross section of a primary xylem (PO:0005849).
number of metaxylem vessels
A vascular tissue morphology trait (TO_0000470) which is the number of metaxylem vessels (PO:0025620).
PMID:1186185
TO:Laurel_Cooper
A flowering time trait (TO:0002616) which is the length of time for a plant or group of plants to reach booting stage (PO:0007014).
2018-02-01T19:15:02Z
TO_GIT:420
plant_trait_ontology
TO:0001067
days to booting
A flowering time trait (TO:0002616) which is the length of time for a plant or group of plants to reach booting stage (PO:0007014).
PMID:26841834
TO:cooperl
A plant quality trait (TO:0000597) that is the utility of a plant, plant structure (PO:0009011) or plant product for post-harvest chemical, biological or mechanical transformation into a desired end product.
Laurel_Cooper
2017-12-07T10:36:57Z
TO_GIT:426
plant_trait_ontology
TO:0001068
processing quality trait
A plant quality trait (TO:0000597) that is the utility of a plant, plant structure (PO:0009011) or plant product for post-harvest chemical, biological or mechanical transformation into a desired end product.
TO:cooperl
A processing quality trait (TO:0001068) that is the utility of a plant, plant structure (PO:0009011) or plant product for a food cooking process (FOODON:03450002).
2017-12-08T00:41:11Z
plant_trait_ontology
TO:0001069
cooking quality trait
A processing quality trait (TO:0001068) that is the utility of a plant, plant structure (PO:0009011) or plant product for a food cooking process (FOODON:03450002).
FOODON:03450002
TO:cooperl
A processing quality trait (TO:0001068) that is the utility of a plant, plant structure (PO:0009011) or plant product for post-harvest brewing of fermented endproducts.
2017-12-08T00:41:25Z
plant_trait_ontology
TO:0001070
brewing quality trait
A processing quality trait (TO:0001068) that is the utility of a plant, plant structure (PO:0009011) or plant product for post-harvest brewing of fermented endproducts.
TO:cooperl
A shoot system yield trait (TO:0000327) which is the yield of shoot axis tubers (PO:0004543).
2017-12-20T23:14:07Z
plant_trait_ontology
TO:0001071
Use for tuber yields of yams (Dioscorea spp.) and potatoes (Solanum spp.).
shoot axis tuber yield
A shoot system yield trait (TO:0000327) which is the yield of shoot axis tubers (PO:0004543).
TO:cooperl
An inflorescence axis morphology trait (TO:0000782) which is the length of an inflorescence axis (PO:0020122).
2018-01-31T19:32:32Z
TO_GIT:407
RACHISLENG (exact)
rachis length (exact)
plant_trait_ontology
TO:0001072
inflorescence axis length
An inflorescence axis morphology trait (TO:0000782) which is the length of an inflorescence axis (PO:0020122).
PMID:26841834
TO:cooperl
A fruit senescing quality trait (TO:0002729) that is the tendency of a fruit (PO:0009001) to dehisce, releasing one or more seed(s) (PO:0009001).
Laurel_Cooper
2018-02-23T19:49:51Z
TO_GIT:430
plant_trait_ontology
TO:0001073
fruit shattering
A fruit senescing quality trait (TO:0002729) that is the tendency of a fruit (PO:0009001) to dehisce, releasing one or more seed(s) (PO:0009001).
TO:cooperl
A fruit shattering trait (TO:0001073) that is the tendency of a legume fruit (PO:0030100) to dehisce, releasing one or more seed(s) (PO:0009001).
Laurel_Cooper
2018-02-23T19:50:20Z
pod shattering (broad)
TO_GIT:430
plant_trait_ontology
TO:0001074
legume fruit shattering
A fruit shattering trait (TO:0001073) that is the tendency of a legume fruit (PO:0030100) to dehisce, releasing one or more seed(s) (PO:0009001).
PMID:27888713
TO:cooperl
A cardinal organ part morphology trait (TO:0000754) which is the size of a pulvinus (PO:0009000).
2018-03-01T23:33:59Z
TO_GIT:429
plant_trait_ontology
TO:0001075
pulvinus size
A cardinal organ part morphology trait (TO:0000754) which is the size of a pulvinus (PO:0009000).
TO:cooperl
A shoot system growth and development trait (TO:0000654) that is a quality of infructescence (PO:0006342) development.
Laurel_Cooper
2018-03-27T19:37:18Z
plant_trait_ontology
TO:0001076
infructescence development trait
A shoot system growth and development trait (TO:0000654) that is a quality of infructescence (PO:0006342) development.
TO:cooperl
A fruit morphology trait (TO:0002629) which is a quality of a berry fruit (PO:0030108).
Laurel_Cooper
2018-09-26T19:37:18Z
plant_trait_ontology
TO:0001077
berry fruit morphology trait
A fruit morphology trait (TO:0002629) which is a quality of a berry fruit (PO:0030108).
TO:cooperl
A fruit morphology trait (TO:0002629) which is a quality of a capsule fruit (PO:0030091).
Laurel_Cooper
2018-09-26T19:37:18Z
plant_trait_ontology
TO:0001078
capsule fruit morphology trait
A fruit morphology trait (TO:0002629) which is a quality of a capsule fruit (PO:0030091).
TO:cooperl
A fruit morphology trait (TO:0002629) which is a quality of a caryopsis fruit (PO:0030104).
Laurel_Cooper
2018-09-26T19:37:18Z
grain morphology trait (exact)
kernel morphology trait (exact)
plant_trait_ontology
TO:0001079
caryopsis fruit morphology trait
A fruit morphology trait (TO:0002629) which is a quality of a caryopsis fruit (PO:0030104).
TO:cooperl
A fruit morphology trait (TO:0002629) which is a quality of a drupe fruit (PO:0030103).
Laurel_Cooper
2018-09-26T19:37:18Z
stone fruit morphology trait (exact)
plant_trait_ontology
TO:0001080
drupe fruit morphology trait
A fruit morphology trait (TO:0002629) which is a quality of a drupe fruit (PO:0030103).
TO:cooperl
A fruit morphology trait (TO:0002629) which is a quality of a follicle fruit (PO:0030105).
Laurel_Cooper
2018-09-26T19:37:18Z
plant_trait_ontology
TO:0001081
follicle fruit morphology trait
A fruit morphology trait (TO:0002629) which is a quality of a follicle fruit (PO:0030105).
TO:cooperl
A fruit morphology trait (TO:0002629) which is a quality of a legume fruit (PO:0030100).
pod morphology trait (exact)
plant_trait_ontology
TO:0001082
legume fruit morphology trait
A fruit morphology trait (TO:0002629) which is a quality of a legume fruit (PO:0030100).
TO:cooperl
A fruit morphology trait (TO:0002629) which is a quality of a nut fruit (PO:0030102).
nut morphology trait (exact)
plant_trait_ontology
TO:0001083
nut fruit morphology trait
A fruit morphology trait (TO:0002629) which is a quality of a nut fruit (PO:0030102).
TO:cooperl
A fruit morphology trait (TO:0002629) which is a quality of a samara fruit (PO:0030099).
Laurel_Cooper
2018-09-26T19:37:18Z
plant_trait_ontology
TO:0001084
samara fruit morphology trait
A fruit morphology trait (TO:0002629) which is a quality of a samara fruit (PO:0030099).
TO:cooperl
A fruit morphology trait (TO:0002629) which is a quality of a schizocarp fruit (PO:0030098).
Laurel_Cooper
2018-09-26T19:37:18Z
plant_trait_ontology
TO:0001085
schizocarp fruit morphology trait
A fruit morphology trait (TO:0002629) which is a quality of a schizocarp fruit (PO:0030098).
TO:cooperl
A fruit morphology trait (TO:0002629) which is a quality of a silique fruit (PO:0030106).
Laurel_Cooper
2018-09-26T19:37:18Z
silique morphology trait (exact)
plant_trait_ontology
TO:0001086
silique fruit morphology trait
A fruit morphology trait (TO:0002629) which is a quality of a silique fruit (PO:0030106).
TO:cooperl
A achene fruit morphology trait (TO:0001097) which is the weight of a achene fruit (PO:0030107).
Laurel_Cooper
2018-09-26T19:37:18Z
plant_trait_ontology
TO:0001087
achene fruit weight
A achene fruit morphology trait (TO:0001097) which is the weight of a achene fruit (PO:0030107).
TO:cooperl
A berry fruit morphology trait (TO:0001077) which is the weight of a berry fruit (PO:0030108).
Laurel_Cooper
2018-09-26T19:37:18Z
plant_trait_ontology
TO:0001088
berry fruit weight
A berry fruit morphology trait (TO:0001077) which is the weight of a berry fruit (PO:0030108).
TO:cooperl
A capsule fruit morphology trait (TO:0001078) which is the weight of a capsule fruit (PO:0030091).
Laurel_Cooper
2018-09-26T19:37:18Z
plant_trait_ontology
TO:0001089
capsule fruit weight
A capsule fruit morphology trait (TO:0001078) which is the weight of a capsule fruit (PO:0030091).
TO:cooperl
A drupe fruit morphology trait (TO:0001080) which is the weight of a drupe fruit (PO:0030103).
Laurel_Cooper
2018-09-26T19:37:18Z
plant_trait_ontology
TO:0001090
drupe fruit weight
A drupe fruit morphology trait (TO:0001080) which is the weight of a drupe fruit (PO:0030103).
TO:cooperl
A follicle fruit morphology trait (TO:0001081) which is the weight of a follicle fruit (PO:0030105).
Laurel_Cooper
2018-09-26T19:37:18Z
plant_trait_ontology
TO:0001091
follicle fruit weight
A follicle fruit morphology trait (TO:0001081) which is the weight of a follicle fruit (PO:0030105).
TO:cooperl
A legume fruit morphology trait (TO:0001082) which is the weight of a legume fruit (PO:0030100).
Laurel_Cooper
2018-09-26T19:37:18Z
pod weight (exact)
plant_trait_ontology
TO:0001092
legume fruit weight
A legume fruit morphology trait (TO:0001082) which is the weight of a legume fruit (PO:0030100).
TO:cooperl
A nut fruit morphology trait (TO:0001083) which is the weight of a nut fruit (PO:0030102).
Laurel_Cooper
2018-09-26T19:37:18Z
plant_trait_ontology
TO:0001093
nut fruit weight
A nut fruit morphology trait (TO:0001083) which is the weight of a nut fruit (PO:0030102).
TO:cooperl
A samara fruit morphology trait (TO:0001084) which is the weight of a samara fruit (PO:0030099).
Laurel_Cooper
2018-09-26T19:37:18Z
plant_trait_ontology
TO:0001094
samara fruit weight
A samara fruit morphology trait (TO:0001084) which is the weight of a samara fruit (PO:0030099).
TO:cooperl
A schizocarp fruit morphology trait (TO:0001085) which is the weight of a schizocarp fruit (PO:0030098).
Laurel_Cooper
2018-09-26T19:37:18Z
plant_trait_ontology
TO:0001095
schizocarp fruit weight
A schizocarp fruit morphology trait (TO:0001085) which is the weight of a schizocarp fruit (PO:0030098).
TO:cooperl
A silique fruit morphology trait (TO:0001086) which is the weight of a silique fruit (PO:0030106).
Laurel_Cooper
2018-09-26T19:37:18Z
plant_trait_ontology
TO:0001096
silique fruit weight
A silique fruit morphology trait (TO:0001086) which is the weight of a silique fruit (PO:0030106).
TO:cooperl
A fruit morphology trait (TO:0002629) which is a quality of a achene fruit (PO:0030107).
Laurel_Cooper
2018-09-26T19:37:18Z
accessory fruit morphology trait (narrow)
plant_trait_ontology
TO:0001097
achene fruit morphology trait
A fruit morphology trait (TO:0002629) which is a quality of a achene fruit (PO:0030107).
TO:cooperl
A berry fruit morphology trait (TO:0001077) which is a quality of a pepo fruit (PO:0030111).
Laurel_Cooper
2018-09-26T19:37:18Z
pepo morphology trait (exact)
plant_trait_ontology
TO:0001098
pepo fruit morphology trait
A berry fruit morphology trait (TO:0001077) which is a quality of a pepo fruit (PO:0030111).
TO:cooperl
A berry fruit morphology trait (TO:0001077) which is a quality of a pome fruit (PO:0030110).
Laurel_Cooper
2018-09-26T19:37:18Z
plant_trait_ontology
TO:0001099
pome fruit morphology trait
A berry fruit morphology trait (TO:0001077) which is a quality of a pome fruit (PO:0030110).
TO:cooperl
A capsule fruit morphology trait (TO:0001078) which is a quality of a circumscissile capsule fruit (PO:0030096).
Laurel_Cooper
2018-09-26T19:37:18Z
plant_trait_ontology
TO:0001100
circumscissile capsule fruit morphology trait
A capsule fruit morphology trait (TO:0001078) which is a quality of a circumscissile capsule fruit (PO:0030096).
TO:cooperl
A circumscissile capsule morphology trait (TO:0001100) which is a quality of a utricle capsule fruit (PO:0030097).
Laurel_Cooper
2018-09-26T19:37:18Z
plant_trait_ontology
TO:0001101
utricle capsule fruit morphology trait
A circumscissile capsule morphology trait (TO:0001100) which is a quality of a utricle capsule fruit (PO:0030097).
TO:cooperl
A capsule fruit morphology trait (TO:0001078) which is a quality of a coccarium capsule fruit (PO:0030094).
Laurel_Cooper
2018-09-26T19:37:18Z
plant_trait_ontology
TO:0001102
coccarium capsule fruit morphology trait
A capsule fruit morphology trait (TO:0001078) which is a quality of a coccarium capsule fruit (PO:0030094).
TO:cooperl
A capsule fruit morphology trait (TO:0001078) which is a quality of a loculicidal capsule fruit (PO:0030092).
Laurel_Cooper
2018-09-26T19:37:18Z
plant_trait_ontology
TO:0001103
loculicidal capsule fruit morphology trait
A capsule fruit morphology trait (TO:0001078) which is a quality of a loculicidal capsule fruit (PO:0030092).
TO:cooperl
A capsule fruit morphology trait (TO:0001078) which is a quality of a poricidal capsule fruit (PO:0030095).
Laurel_Cooper
2018-09-26T19:37:18Z
plant_trait_ontology
TO:0001104
poricidal capsule fruit morphology trait
A capsule fruit morphology trait (TO:0001078) which is a quality of a poricidal capsule fruit (PO:0030095).
TO:cooperl
A capsule fruit morphology trait (TO:0001078) which is a quality of a septicidal capsule fruit (PO:0030093).
Laurel_Cooper
2018-09-26T19:37:18Z
plant_trait_ontology
TO:0001105
septicidal capsule fruit morphology trait
A capsule fruit morphology trait (TO:0001078) which is a quality of a septicidal capsule fruit (PO:0030093).
TO:cooperl
A legume fruit morphology trait (TO:0001082) which is a quality of a loment fruit (PO:0030101).
Laurel_Cooper
2018-09-26T19:37:18Z
plant_trait_ontology
TO:0001106
loment fruit morphology trait
A legume fruit morphology trait (TO:0001082) which is a quality of a loment fruit (PO:0030101).
TO:cooperl
A berry fruit morphology trait (TO:0001077) which is a quality of a hesperidium fruit (PO:0030109).
Laurel_Cooper
2018-09-26T19:37:18Z
citrus fruit morphology trait (exact)
plant_trait_ontology
TO:0001107
hesperidium fruit morphology trait
A berry fruit morphology trait (TO:0001077) which is a quality of a hesperidium fruit (PO:0030109).
TO:cooperl
A caryopsis fruit morphology trait (TO:0001079) which is the volume of a grain (caryopsis fruit; PO:0030104).
GRVOL (exact)
kernel volume (exact)
plant_trait_ontology
TO:0001108
grain volume
A caryopsis fruit morphology trait (TO:0001079) which is the volume of a grain (caryopsis fruit; PO:0030104).
TO:cooperl
A caryopsis fruit morphology trait (TO:0001079) which is the color of a grain (caryopsis fruit; PO:0030104).
2019-02-18T19:27:51Z
plant_trait_ontology
kernel color (related)
TO:0001109
grain color trait
A caryopsis fruit morphology trait (TO:0001079) which is the color of a grain (caryopsis fruit; PO:0030104).
TO:cooperl
An inflorescence morphology trait (TO:0000373) which is a quality of a spike inflorescence (PO:0030117).
cooperl
2019-09-19T21:16:45Z
plant_trait_ontology
TO:0001110
spike inflorescence morphology trait
An inflorescence morphology trait (TO:0000373) which is a quality of a spike inflorescence (PO:0030117).
TO:cooperl
A nematode damage response (TO:0000384) to the Soybean cyst nematode (Heterodera glycines).
cooperl
TO_GIT:461
plant_trait_ontology
TO:0001111
Refers to soybean cyst nematode (Heterodera glycines; NCBITaxon:51029).
Heterodera glycines response
A nematode damage response (TO:0000384) to the Soybean cyst nematode (Heterodera glycines).
TO:cooperl
A floral organ morphology trait (TO:0000862) which is the size of a floral organ (PO:0025395).
PATO:0000117
plant_trait_ontology
TO:0002600
Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.
floral organ size
A floral organ morphology trait (TO:0000862) which is the size of a floral organ (PO:0025395).
Gramene:pankaj_jaiswal
PO:0025395
TO:moorel
A stamen morphology trait (TO:0000225) which is the size of a stamen (PO:0009029).
PATO:0000117
plant_trait_ontology
TO:0002601
Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large.
stamen size
A stamen morphology trait (TO:0000225) which is the size of a stamen (PO:0009029).
Gramene:pankaj_jaiswal
PO:0009029
TO:moorel
A pistil morphology trait (TO:0000223) which is the size of a pistil.
PATO:0000117
plant_trait_ontology
TO:0002602
Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.
pistil size
A pistil morphology trait (TO:0000223) which is the size of a pistil.
Gramene:pankaj_jaiswal
TO:moorel
A petal morphology trait (TO:0000863) which is the size of a petal (PO:0009032).
PATO:0000117
plant_trait_ontology
TO:0002603
Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large.
petal size
A petal morphology trait (TO:0000863) which is the size of a petal (PO:0009032).
Gramene:pankaj_jaiswal
PO:0009032
TO:moorel
A sepal morphology trait (TO:0000864) which is the size of a sepal (PO:0009031).
PATO:0000117
plant_trait_ontology
TO:0002604
Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large.
sepal size
A sepal morphology trait (TO:0000864) which is the size of a sepal (PO:0009031).
Gramene:pankaj_jaiswal
PO:0009031
TO:moorel
A petal morphology trait (TO:0000863) which is the length of a petal (PO:0009032).
PATO:0000122
plant_trait_ontology
TO:0002605
Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
petal length
A petal morphology trait (TO:0000863) which is the length of a petal (PO:0009032).
Gramene:pankaj_jaiswal
PO:0009032
TO:moorel
A petal morphology trait (TO:0000863) which is the width of a petal (PO:0009032) in a flower (PO:0009049).
PATO:0000921
plant_trait_ontology
TO:0002606
Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite.
petal width
A petal morphology trait (TO:0000863) which is the width of a petal (PO:0009032) in a flower (PO:0009049).
Gramene:pankaj_jaiswal
PO:0009032
PO:0009049
TO:moorel
A sepal morphology trait (TO:0000864) which is the length of a sepal (PO:0009031).
PATO:0000122
plant_trait_ontology
TO:0002607
Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
sepal length
A sepal morphology trait (TO:0000864) which is the length of a sepal (PO:0009031).
Gramene:pankaj_jaiswal
PO:0009031
TO:moorel
A sepal morphology trait (TO:0000864) which is the width of a sepal (PO:0009031) in a flower (PO:0009049).
PATO:0000921
plant_trait_ontology
TO:0002608
Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite.
sepal width
A sepal morphology trait (TO:0000864) which is the width of a sepal (PO:0009031) in a flower (PO:0009049).
Gramene:pankaj_jaiswal
PO:0009031
PO:0009049
TO:moorel
A stamen morphology trait (TO:0000215) which is the length of a stamen (PO:0009029).
PATO:0000122
plant_trait_ontology
TO:0002609
Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
stamen length
A stamen morphology trait (TO:0000215) which is the length of a stamen (PO:0009029).
Gramene:pankaj_jaiswal
PO:0009029
TO:moorel
A pistil morphology trait (TO:0000223) which is the length of a pistil.
PATO:0000122
plant_trait_ontology
TO:0002610
Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
pistil length
A pistil morphology trait (TO:0000223) which is the length of a pistil.
Gramene:pankaj_jaiswal
TO:moorel
A developmental trait resulting development of increased, decreased or new organs and organ parts due to a mutation that causes one member of a repetitive series to assume the identity of another member , for example, the transformation of sepals into petals.
plant_trait_ontology
homeotic mutation (related)
TO:0002611
homeotic development trait
A developmental trait resulting development of increased, decreased or new organs and organ parts due to a mutation that causes one member of a repetitive series to assume the identity of another member , for example, the transformation of sepals into petals.
Gramene:pankaj_jaiswal
A developmental trait resulting development of increased, decreased or new vegetative organs and organ parts due to a mutation that causes one member of a repetitive series to assume the identity of another member , for example, the transformation of leaves into scales.
plant_trait_ontology
TO:0002612
vegetative homeotic development trait
A developmental trait resulting development of increased, decreased or new vegetative organs and organ parts due to a mutation that causes one member of a repetitive series to assume the identity of another member , for example, the transformation of leaves into scales.
Gramene:pankaj_jaiswal
A developmental trait resulting development of increased, decreased or new reproductive organs and organ parts due to a mutation that causes one member of a repetitive series to assume the identity of another member , for example, the transformation of sepals into petals.
plant_trait_ontology
TO:0002613
reproductive homeotic development trait
A developmental trait resulting development of increased, decreased or new reproductive organs and organ parts due to a mutation that causes one member of a repetitive series to assume the identity of another member , for example, the transformation of sepals into petals.
Gramene:pankaj_jaiswal
A floral organ morphology trait (TO:0000862) which is the length of a floral organ (PO:0025395).
PATO:0000122
plant_trait_ontology
TO:0002614
Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
floral organ length
A floral organ morphology trait (TO:0000862) which is the length of a floral organ (PO:0025395).
Gramene:pankaj_jaiswal
PO:0025395
TO:moorel
A floral organ morphology trait (TO:0000862) which is the width of a floral organ (PO:0025395).
PATO:0000921
plant_trait_ontology
TO:0002615
Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite.
floral organ width
A floral organ morphology trait (TO:0000862) which is the width of a floral organ (PO:0025395).
Gramene:pankaj_jaiswal
PO:0025395
TO:moorel
A plant phenological trait (TO:0000933) which is a quality of the timing of anthesis (flowering stage; PO:0007616).
TO_GIT:267
plant_trait_ontology
anthesis timing (related)
time of flowering (related)
TO:0002616
Often influenced by the environment that includes, day light, temperature and geographic location.
flowering time trait
A plant phenological trait (TO:0000933) which is a quality of the timing of anthesis (flowering stage; PO:0007616).
Gramene:pankaj_jaiswal
TO:cooperl
A fruit morphology trait (TO:0002617) which is the color of a fruit (PO:0009001).
PATO:0000014
plant_trait_ontology
TO:0002617
Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts.
fruit color
A fruit morphology trait (TO:0002617) which is the color of a fruit (PO:0009001).
Gramene:pankaj_jaiswal
PO:0009001
TO:moorel
An endocarp morphology trait (TO:0000946) which is a the color of an endocarp (PO:0009084).
PATO:0000014
TO_GIT:293
plant_trait_ontology
TO:0002618
endocarp color
An endocarp morphology trait (TO:0000946) which is a the color of an endocarp (PO:0009084).
TO:austin_meier
A mesocarp morphology trait (TO:0000948) which is the color of a mesocarp (PO:0009087).
PATO:0000014
TO_GIT:294
plant_trait_ontology
TO:0002619
mesocarp color
A mesocarp morphology trait (TO:0000948) which is the color of a mesocarp (PO:0009087).
TO:austin_meier
TO:cooperl
An exocarp morphology trait (TO:0000906) which is the color of an exocarp (PO:0009085).
PATO:0000014
TO_GIT:295
epicarp color (exact)
plant_trait_ontology
TO:0002620
exocarp color
An exocarp morphology trait (TO:0000906) which is the color of an exocarp (PO:0009085).
TO:austin_meier
TO:cooperl
A fruit color trait (TO:0002617) which is the color of a fruit columella (PO:0004540).
PATO:0000014
plant_trait_ontology
TO:0002621
Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts.
fruit columella color
A fruit color trait (TO:0002617) which is the color of a fruit columella (PO:0004540).
PO:0004540
TO:moorel
The traits observed for the locular tissue present around the seeds as found in Solanaceae.
plant_trait_ontology
TO:0002622
The values observed in tomato and pepper fruits may be defined differently.
locular tissue trait
The traits observed for the locular tissue present around the seeds as found in Solanaceae.
SGN:nm
A pericarp morphology trait (TO:0000945) that is the texture of the pericarp (PO:0009084).
PATO:0000150
TO_GIT:292
plant_trait_ontology
TO:0002623
pericarp texture
A pericarp morphology trait (TO:0000945) that is the texture of the pericarp (PO:0009084).
TO:cooperl
An exocarp morphology trait (TO:0000906) that is the texture of the exocarp (PO:0009085).
PATO:0000150
TO_GIT:295
plant_trait_ontology
TO:0002624
exocarp texture
An exocarp morphology trait (TO:0000906) that is the texture of the exocarp (PO:0009085).
TO:austin_meier
TO:cooperl
A fruit morphology trait (TO:0002629) which is the size of a fruit (PO:0009001).
PATO:0000117
kernel size (narrow)
pod size (narrow)
plant_trait_ontology
FRSZ (related)
TO:0002625
Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large.
fruit size
A fruit morphology trait (TO:0002629) which is the size of a fruit (PO:0009001).
Gramene:pankaj_jaiswal
TO:moorel
A fruit morphology trait (TO:0002629) which is the length of a fruit (PO:0009001).
PATO:0000122
GRLG (narrow)
grain length (narrow)
pod length (narrow)
plant_trait_ontology
TO:0002626
Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
fruit length
A fruit morphology trait (TO:0002629) which is the length of a fruit (PO:0009001).
Gramene:pankaj_jaiswal
PO:0009001
TO:moorel
A fruit morphology trait (TO:0002629) which is the width of a fruit (PO:0009001).
PATO:0000921
kernel width (narrow)
plant_trait_ontology
FRWD (related)
kernel plumpness (related)
percentage of plump kernels (related)
plump grain (related)
TO:0002627
Refer to width PATO:0000921: A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite.
fruit width
A fruit morphology trait (TO:0002629) which is the width of a fruit (PO:0009001).
Gramene:pankaj_jaiswal
PO:0009001
TO:moorel
A fruit morphology trait (TO:0002629) which is the shape of a fruit (PO:0009001).
PATO:0000052
pod shape (narrow)
plant_trait_ontology
TO:0002628
Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
fruit shape
A fruit morphology trait (TO:0002629) which is the shape of a fruit (PO:0009001).
Gramene:pankaj_jaiswal
TO:moorel
A multi-tissue plant structure morphology trait (TO:0000836) which is a quality of a fruit (PO:0009001).
plant_trait_ontology
fruit morphology (related)
TO:0002629
fruit morphology trait
A multi-tissue plant structure morphology trait (TO:0000836) which is a quality of a fruit (PO:0009001).
Gramene:pankaj_jaiswal
PO:0009001
TO:moorel
A fruit shape (TO:0002628) which is the shape of a fruit distal end (PO:0008001).
PATO:0000052
plant_trait_ontology
TO:0002630
Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
fruit distal end shape
A fruit shape (TO:0002628) which is the shape of a fruit distal end (PO:0008001).
Gramene:pankaj_jaiswal
PO:0008001
TO:moorel
A fruit shape (TO:0002628) which is the shape of the fruit proximal end (PO:0008002).
PATO:0000052
plant_trait_ontology
TO:0002631
Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
fruit proximal end shape
A fruit shape (TO:0002628) which is the shape of the fruit proximal end (PO:0008002).
Gramene:pankaj_jaiswal
PO:0008002
TO:moorel
A fruit morphology trait (TO:0002632) which is the size of the fruit abscission zone (PO:0006503).
PATO:0000117
plant_trait_ontology
size stem scar size (related)
TO:0002632
Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large.
fruit abscission zone size
A fruit morphology trait (TO:0002632) which is the size of the fruit abscission zone (PO:0006503).
Gramene:pankaj_jaiswal
PO:0006503
TO:moorel
A fruit growth and development trait (TO:0000929) that is the extent of fruit ripening (GO:0009835).
GO:0009835
TO_GIT:256
plant_trait_ontology
fruit ripening (related)
TO:0002633
Fruit ripening (GO:0009835) is an aging process that has as participant a fruit. Ripening causes changes in one or more characteristics of a fruit (color, aroma, flavor, texture, hardness, cell wall structure) and may make it more attractive to animals and aid in seed dispersal.
fruit ripening trait
A fruit growth and development trait (TO:0000929) that is the extent of fruit ripening (GO:0009835).
Gramene:pankaj_jaiswal
TO:cooperl
In addition to the fruit color, firmness is the best measurement of ripeness. It is assayed as the force necessary to break the flesh tissues and depends on the different growth stages during the ripening process.
plant_trait_ontology
TO:0002634
fruit firmness
In addition to the fruit color, firmness is the best measurement of ripeness. It is assayed as the force necessary to break the flesh tissues and depends on the different growth stages during the ripening process.
BR:pj
A phyllome margin morphology trait (TO:0000834) which is a quality of a leaf margin (PO:0020128).
jaiswalp
TO_GIT:142
plant_trait_ontology
leaf margin curvature (related)
TO:0002635
Often associated with leaf margin curvature.
leaf margin morphology trait
A phyllome margin morphology trait (TO:0000834) which is a quality of a leaf margin (PO:0020128).
Gramene:pankaj_jaiswal
PO:0020128
An assay to detrmine the variation the number of leaves.
plant_trait_ontology
TO:0002636
leaflet number
An assay to detrmine the variation the number of leaves.
Gramene:pankaj_jaiswal
A leaf morphology trait (TO:0000748) which is the size of a leaf (PO:0025034).
PATO:0000117
plant_trait_ontology
TO:0002637
Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
leaf size
A leaf morphology trait (TO:0000748) which is the size of a leaf (PO:0025034).
Gramene:pankaj_jaiswal
PO:0025034
TO:cooperl
An assay to associate observing effects on the development of shoot meristem.
plant_trait_ontology
shoot meristem abortion (related)
TO:0002638
shoot meristem development
An assay to associate observing effects on the development of shoot meristem.
Gramene:pankaj_jaiswal
A shoot axis morphology trait (TO:0000739) which is the amount or pattern of branches arising from the shoot axis (PO:0025029).
plant_trait_ontology
TO:0002639
shoot branching
A shoot axis morphology trait (TO:0000739) which is the amount or pattern of branches arising from the shoot axis (PO:0025029).
TO:cooperl
OBSOLETE
plant_trait_ontology
TO:0002640
OBSOLETE fruit set trait
true
The percentage of highly indigestible or slowly digestible fiber in a feed or forage. Acid detergent fiber contains cellulose as well as silica and lignin which are associated with low digestibility.
plant_trait_ontology
ACIDDETFIBR (related)
ADF (related)
TO:0002641
The method typically uses acidified quaternary detergent solution to dissolve cell solubles, hemicellulose and soluble minerals leaving a residue of cellulose, lignin, and heat damaged protein and a portion of cell wall protein and minerals (ash). Acid detergent fiber is determined gravimetrically as the residue remaining after extraction. The lower the acid detergent fiber, the more digestible the feed is and the higher the energy value of the feed.
acid detergent fiber
The percentage of highly indigestible or slowly digestible fiber in a feed or forage. Acid detergent fiber contains cellulose as well as silica and lignin which are associated with low digestibility.
GrainGenes_trait:Acid_Detergent_Fiber
Gramene:pankaj_jaiswal
The traits assayed for content and quality of food/forage based on pre or post digestive processes.
plant_trait_ontology
TO:0002642
dietary fiber related trait
The traits assayed for content and quality of food/forage based on pre or post digestive processes.
Gramene:pankaj_jaiswal
It is a measure of the C isotopic composition in plant material relative to the value of the same ratio in the air of the environment where the plant is grown.
plant_trait_ontology
CBISOTPDISC (related)
TO:0002643
carbon isotope discrimination
It is a measure of the C isotopic composition in plant material relative to the value of the same ratio in the air of the environment where the plant is grown.
GrainGenes_trait:Carbon_isotope_discrimination
Gramene:pankaj_jaiswal
PMID:11756262
Expressed as a percent, is a measure of the dry matter content of forage or feed that is retained in the animal body.
plant_trait_ontology
DMATTDIGAB (related)
TO:0002644
dry matter digestibility
Expressed as a percent, is a measure of the dry matter content of forage or feed that is retained in the animal body.
GrainGenes_trait:Dry_matter_digestibility
Gramene:iyt
Gramene:pankaj_jaiswal
Percentage of soft malt, measured from micro malting 50g of barley.
plant_trait_ontology
MALTTENDER (related)
TO:0002645
malt tenderness
Percentage of soft malt, measured from micro malting 50g of barley.
GrainGenes_trait:Malt_tenderness
PMID:12677407
Size of flour particles determined after grinding the grains. The size depends on the length and type of grinding.
plant_trait_ontology
FLRPARTSZ (related)
TO:0002646
It affects the water absorption, dough handling characteristics and loaf volume while cooking.
flour particle size
Size of flour particles determined after grinding the grains. The size depends on the length and type of grinding.
GrainGenes_trait:Particle_size
Gramene:pankaj_jaiswal
Expressed as a percent, is a measure of the starch content of forage or feed that is retained in the animal body.
plant_trait_ontology
STARCHDIG (related)
TO:0002647
starch digestibility
Expressed as a percent, is a measure of the starch content of forage or feed that is retained in the animal body.
GrainGenes_trait:Starch_digestibility
Gramene:pankaj_jaiswal
A measure of the relative water absorption after soaking a known amount (weight) of seed.
plant_trait_ontology
WABSORPSD (related)
TO:0002648
water absorption by seed
A measure of the relative water absorption after soaking a known amount (weight) of seed.
GrainGenes_trait:Water_absorption
Gramene:pankaj_jaiswal
A chemical stress sensitivity (TO:0000482) which is the tolerance exhibited by a plant or a group of plants (population) towards the applied pesticide.
plant_trait_ontology
TO:0002649
pesticide sensitivity
A chemical stress sensitivity (TO:0000482) which is the tolerance exhibited by a plant or a group of plants (population) towards the applied pesticide.
TO:cooperl
The directional growth of a whole plant (PO:0000003) or plant structure (PO:0009011) in response to light.
coleoptile curvature (narrow)
coleoptile phototropism (narrow)
plant_trait_ontology
TO:0002650
phototropism response trait
The directional growth of a whole plant (PO:0000003) or plant structure (PO:0009011) in response to light.
Gramene:pankaj_jaiswal
PMID:15598797
A phototropism response trait (TO:0002650) which is the directional growth of a shoot axis (PO:0025029) in response to light.
plant_trait_ontology
TO:0002651
shoot axis phototropism response trait
A phototropism response trait (TO:0002650) which is the directional growth of a shoot axis (PO:0025029) in response to light.
Gramene:pankaj_jaiswal
PMID:15598797
A phototropism response trait (TO:0002650) which which is the directional growth of a root (PO:0009005) in response to light.
plant_trait_ontology
TO:0002652
root phototropism response trait
A phototropism response trait (TO:0002650) which which is the directional growth of a root (PO:0009005) in response to light.
Gramene:pankaj_jaiswal
PMID:15598797
Assay for the amount of seed storage protein present in the endosperm.
plant_trait_ontology
TO:0002653
endosperm storage protein content
Assay for the amount of seed storage protein present in the endosperm.
Gramene:pankaj_jaiswal
Catalysis of the reaction: ATP + pyruvate + phosphate = AMP + phosphoenolpyruvate + diphosphate.
PPDK (exact)
Pyruvate phosphate dikinase (exact)
Pyruvate, phosphate phosphotransferase (exact)
plant_trait_ontology
TO:0002654
pyruvate orthophosphate dikinase activity trait
Catalysis of the reaction: ATP + pyruvate + phosphate = AMP + phosphoenolpyruvate + diphosphate.
EC:2.7.9.1
GO:0050242
Gramene:pankaj_jaiswal
Assay to determine the size of the starch grain size.
plant_trait_ontology
TO:0002655
starch grain size
Assay to determine the size of the starch grain size.
Gramene:pankaj_jaiswal
Assay to determine the shape of the starch grain.
plant_trait_ontology
TO:0002656
starch grain shape
Assay to determine the shape of the starch grain.
Gramene:pankaj_jaiswal
A chemical stress sensitivity (TO:0000482) which is the production of reactive oxygen and the plants ability to readily detoxify the reactive intermediates.
plant_trait_ontology
TO:0002657
oxidative stress
A chemical stress sensitivity (TO:0000482) which is the production of reactive oxygen and the plants ability to readily detoxify the reactive intermediates.
Gramene:pankaj_jaiswal
TO:moorel
An assay to determine if the starch grains are formed in the plant or plant part. Often associated with the starch biosynthesis and branching of the starch.
plant_trait_ontology
TO:0002658
starch grain synthesis
An assay to determine if the starch grains are formed in the plant or plant part. Often associated with the starch biosynthesis and branching of the starch.
Gramene:pankaj_jaiswal
A pistil morphology trait (TO:0000223) which is the number of pistils in the gynoecium (PO:0009062).
plant_trait_ontology
TO:0002659
pistil number
A pistil morphology trait (TO:0000223) which is the number of pistils in the gynoecium (PO:0009062).
Gramene:pankaj_jaiswal
PO:0009062
TO:moorel
Measures the cytokinin content in a plant or plant part.
plant_trait_ontology
TO:0002660
cytokinin content
Measures the cytokinin content in a plant or plant part.
Gramene:pankaj_jaiswal
This trait can be derived based on the parameters like, degree of grain filling, grain hardness, hull color, grain moisture, etc. It can be determined for (a)synchronously with any of these parameters.
plant_trait_ontology
SDMT (related)
asynchronous seed maturation (related)
nonsynchronous seed maturation (related)
synchronous seed maturation (related)
TO:0002661
seed maturation
This trait can be derived based on the parameters like, degree of grain filling, grain hardness, hull color, grain moisture, etc. It can be determined for (a)synchronously with any of these parameters.
Gramene:pankaj_jaiswal
A leaf rolling trait (TO:0000085) which is the tolerance for leaf rolling or wilting observed in response to stresses like drought, water and temperature. It precedes leaf drying stage.
Cold-induced wilting tolerance (broad)
LFRLTL (exact)
wilting tolerance (narrow)
plant_trait_ontology
TO:0002662
leaf rolling tolerance
A leaf rolling trait (TO:0000085) which is the tolerance for leaf rolling or wilting observed in response to stresses like drought, water and temperature. It precedes leaf drying stage.
Gramene:pankaj_jaiswal
TO:moorel
Tolerance for leaf necrosis or scorching observed in response to stresses like drought, insecticides and cold temperature as evidenced by less number or chlorotic and/or necrotic tissue.
plant_trait_ontology
Cold-induced necrosis tolerance (related)
LFNECTL (related)
necrosis tolerance (related)
TO:0002663
leaf necrosis tolerance
Tolerance for leaf necrosis or scorching observed in response to stresses like drought, insecticides and cold temperature as evidenced by less number or chlorotic and/or necrotic tissue.
Gramene:pankaj_jaiswal
Tolerance for leaf color yellowing observed in response to stresses like drought, water and temperature. It may precedes leaf drying stage.
Cold-induced yellowing tolerance (broad)
plant_trait_ontology
LFYTL (related)
TO:0002664
leaf yellowing tolerance
Tolerance for leaf color yellowing observed in response to stresses like drought, water and temperature. It may precedes leaf drying stage.
Gramene:pankaj_jaiswal
A root morphology trait (TO:0000043) which is the length of a root hair (GO:0035618) present on a root (PO:0009005).
plant_trait_ontology
RTHLG (related)
RTHRLG (related)
TO:0002665
Root hair length can be calculated as the average maximum length of the root hairs present.
root hair length
A root morphology trait (TO:0000043) which is the length of a root hair (GO:0035618) present on a root (PO:0009005).
Gramene:pankaj_jaiswal
Amount of phosphorus in the seed.
plant_trait_ontology
SDPHOCN (related)
TO:0002666
seed phosphorus content
Amount of phosphorus in the seed.
Gramene:pankaj_jaiswal
A growth hormone content (TO:0000476) trait which is the abscisic acid (CHEBI:62431) content in a plant structure (PO:0009011).
CHEBI:62431
plant_trait_ontology
ABA content (related)
ABACN (related)
TO:0002667
abscisic acid content
A growth hormone content (TO:0000476) trait which is the abscisic acid (CHEBI:62431) content in a plant structure (PO:0009011).
CHEBI:62431
Measures the jasmonic acid content in a plant or plant part.
plant_trait_ontology
JA content (related)
jasmonate content (related)
TO:0002668
jasmonic acid content
Measures the jasmonic acid content in a plant or plant part.
Gramene:pankaj_jaiswal
PMID:17031029
Measures the diterpenoid phytoalexin content in a plant or plant part.
plant_trait_ontology
TO:0002669
Diterpenoid phytoalexins are polycyclic diterpenes involved in pathogen response.
diterpenoid phytoalexin content
Measures the diterpenoid phytoalexin content in a plant or plant part.
Gramene:pankaj_jaiswal
Measures the momilactone A content in a plant or plant part.
plant_trait_ontology
phytoalexin momilactone A content (related)
TO:0002670
Momilactone A is a instance of diterpenoid phytoalexin.
momilactone A content
Measures the momilactone A content in a plant or plant part.
PMID:16569039
Measures the momilactone B content in a plant structure (PO:0009011).
plant_trait_ontology
phytoalexin momilactone B content (related)
TO:0002671
Momilactone B is a instance of diterpenoid phytoalexin.
momilactone B content
Measures the momilactone B content in a plant structure (PO:0009011).
PMID:16569039
TO:cooperl
A growth hormone content (TO:0000476) trait which is the amount of auxin (CHEBI:22676) in a plant structure (PO:0009011).
CHEBI:22676
plant_trait_ontology
AUXCN (related)
TO:0002672
The most important auxin produced by plants is indole-3-acetic acid (IAA).
auxin content
A growth hormone content (TO:0000476) trait which is the amount of auxin (CHEBI:22676) in a plant structure (PO:0009011).
Gramene:pankaj_jaiswal
PMID:16908506
The amino acid content in a plant or plant part.
plant_trait_ontology
TO:0002673
amino acid content
The amino acid content in a plant or plant part.
Gramene:pankaj_jaiswal
Amino acid tryptophan content in a plant or plant part.
plant_trait_ontology
TO:0002674
tryptophan content
Amino acid tryptophan content in a plant or plant part.
Gramene:pankaj_jaiswal
Measures the gibberellic acid content in a plant or plant part.
plant_trait_ontology
GA content (related)
GACN (related)
gibberellin content (related)
TO:0002675
gibberellic acid content
Measures the gibberellic acid content in a plant or plant part.
Gramene:pankaj_jaiswal
Measures the brassinosteroid content in a plant or plant part.
plant_trait_ontology
BRCN (related)
TO:0002676
Brassinosteroids (BR) are a group of steroidal plant hormones.
brassinosteroid content
Measures the brassinosteroid content in a plant or plant part.
Gramene:pankaj_jaiswal
Response with respect to application of Brassinosteroid.
plant_trait_ontology
BRSN (related)
TO:0002677
Brassinosteroids (BR) are a group of steroidal plant hormones.
brassinosteroid sensitivity
Response with respect to application of Brassinosteroid.
Gramene:pankaj_jaiswal
A panicle number (TO:0000152) trait which is the absence of panicle in the plant, either due to the abortion of the developmental process and/or due to environmental factors.
plant_trait_ontology
TO:0002678
panicleless
A panicle number (TO:0000152) trait which is the absence of panicle in the plant, either due to the abortion of the developmental process and/or due to environmental factors.
Gramene:pankaj_jaiswal
TO:moorel
The absence of inflorescence in the plant, either due to the abortion of the inflorescence developmental process and/or due to environmental factors.
plant_trait_ontology
TO:0002679
inflorescenceless
The absence of inflorescence in the plant, either due to the abortion of the inflorescence developmental process and/or due to environmental factors.
Gramene:pankaj_jaiswal
Assay to determine the amount of albumin protein.
plant_trait_ontology
albumen content (related)
TO:0002680
albumin content
Assay to determine the amount of albumin protein.
Gramene:pankaj_jaiswal
An assay to measure the extent of curling of the leaf lamina.
plant_trait_ontology
curled leaf trait (related)
frizzled leaf trait (related)
TO:0002681
This is due to the changes in the leaf developmental process and is different from the leaf rolling (TO:0000085) observed due to the water deficient or dorught linke conditions.
leaf curling
An assay to measure the extent of curling of the leaf lamina.
Gramene:pankaj_jaiswal
A plant cell morphology trait (TO:0002683) which is the shape of a plant cell (PO:0009002) type.
PATO:0000052
plant_trait_ontology
TO:0002682
Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
plant cell shape
A plant cell morphology trait (TO:0002683) which is the shape of a plant cell (PO:0009002) type.
Gramene:pankaj_jaiswal
PO:0009002
TO:moorel
A plant structure morphology trait (TO:0000839) which is a quality of a plant cell (PO:0009002).
TO_GIT:307
plant_trait_ontology
TO:0002683
plant cell morphology trait
A plant structure morphology trait (TO:0000839) which is a quality of a plant cell (PO:0009002).
Gramene:pankaj_jaiswal
PO:0009002
TO:moorel
A plant cell morphology trait (TO:0002683) which is the size of a plant cell (PO:0009002) type.
PATO:0000117
plant_trait_ontology
TO:0002684
Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.
plant cell size
A plant cell morphology trait (TO:0002683) which is the size of a plant cell (PO:0009002) type.
Gramene:pankaj_jaiswal
PO:0009002
TO:moorel
A count of number of crown roots present in the seedling.
plant_trait_ontology
TO:0002685
crown root number
A count of number of crown roots present in the seedling.
Gramene:pankaj_jaiswal
Traits associated with observing effects on the growth and development of the plant cell and its parts.
plant_trait_ontology
TO:0002686
cell growth and development trait
Traits associated with observing effects on the growth and development of the plant cell and its parts.
Gramene:pankaj_jaiswal
An assay to determine the variation in the length of the plant cell due to cell growth and elongation.
plant_trait_ontology
cell length (related)
TO:0002687
cell elongation trait
An assay to determine the variation in the length of the plant cell due to cell growth and elongation.
Gramene:pankaj_jaiswal
A leaf lamina morphology trait (TO:0000829) which is the extent of the bending that occurrs to the leaf lamina (PO:0020039) joint in degrees.
plant_trait_ontology
TO:0002688
It may happen due to environmental stress such as upon brassinosteroid treatment.
leaf lamina joint bending
A leaf lamina morphology trait (TO:0000829) which is the extent of the bending that occurrs to the leaf lamina (PO:0020039) joint in degrees.
Gramene:pankaj_jaiswal
PMID:14615594
PO:0020039
TO:moorel
A leaf sheath morphology trait (TO:0000835) which is the length of the leaf sheath (PO:0020104).
PATO:0000122
plant_trait_ontology
LFSLG (related)
TO:0002689
Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. Usually measured in in centimeters.
leaf sheath length
A leaf sheath morphology trait (TO:0000835) which is the length of the leaf sheath (PO:0020104).
Gramene:pankaj_jaiswal
PO:0020104
TO:moorel
A leaf lamina morphology trait (TO:0000829) which is the length of the leaf laimina (PO:0020039).
PATO:0000122
leaf blade length (exact)
plant_trait_ontology
LFLLG (related)
TO:0002690
Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. Usually measured in centimeters.
leaf lamina length
A leaf lamina morphology trait (TO:0000829) which is the length of the leaf laimina (PO:0020039).
Gramene:pankaj_jaiswal
PO:0020039
TO:moorel
A peduncle morphology trait (TO:0000776) which is the length of a peduncle (PO:0009053).
PATO:0000122
TO_GIT:88
neck internode length (exact)
plant_trait_ontology
TO:0002691
Peduncle is the stalk of an inflorescence; that part of the inflorescence below the first flower or inflorescence branch and above the last foliage leaf/pair of foliage leaves.
Refers to the length ((PATO:0000122):A 1-D extent quality which is equal to the distance between two points) of a peduncle (PO:0009053).
peduncle length
A peduncle morphology trait (TO:0000776) which is the length of a peduncle (PO:0009053).
Gramene:pankaj_jaiswal
PO:0009053
TO:cooperl
neck internode length (exact)
PMID:17303594
An assay to determine the variation in the root meristem development.
plant_trait_ontology
TO:0002692
The variation may be due to both the genotypic and/or environmental effects.
root meristem development
An assay to determine the variation in the root meristem development.
Gramene:pankaj_jaiswal
PMID:17303594
An assay to determine the variation in the gravitropism under the influence of gravity or zero gravity.
plant_trait_ontology
TO:0002693
gravity response trait
An assay to determine the variation in the gravitropism under the influence of gravity or zero gravity.
Gramene:pankaj_jaiswal
An assay to determine the sensory impression of a fruit by the chemical senses of taste and smell.
TO_GIT:117
pod flavor trait (narrow)
plant_trait_ontology
TO:0002694
fruit flavor trait
An assay to determine the sensory impression of a fruit by the chemical senses of taste and smell.
Gramene:pankaj_jaiswal
The beta-carotene content in a plant or plant part.
beta-carotenoid content (exact)
plant_trait_ontology
TO:0002695
The most common form of carotenoid is beta-carotene.
beta-carotene content
The beta-carotene content in a plant or plant part.
Gramene:pankaj_jaiswal
The alpha-carotene content in a plant or plant part.
alpha-carotenoid content (exact)
plant_trait_ontology
TO:0002696
The alpha-carotene is the second most common form of carotenoid.
alpha carotene content
The alpha-carotene content in a plant or plant part.
Gramene:pankaj_jaiswal
The cyclic carotene content in a plant or plant part.
plant_trait_ontology
TO:0002697
cyclic carotene content
The cyclic carotene content in a plant or plant part.
Gramene:pankaj_jaiswal
The acyclic carotene content in a plant or plant part.
plant_trait_ontology
TO:0002698
acyclic carotene content
The acyclic carotene content in a plant or plant part.
Gramene:pankaj_jaiswal
The lycopene content in a plant or plant part.
plant_trait_ontology
TO:0002699
Lycopene is the most efficient quencher of singlet oxygen free radicals.
lycopene content
The lycopene content in a plant or plant part.
Gramene:pankaj_jaiswal
The quality of producing a sharp sensation of taste or smell.
plant_trait_ontology
TO:0002700
pungency
The quality of producing a sharp sensation of taste or smell.
Gramene:pankaj_jaiswal
The leutein content in a plant or plant part.
plant_trait_ontology
TO:0002701
lutein content
The leutein content in a plant or plant part.
Gramene:pankaj_jaiswal
Causal agent: Cercospora spp.
plant_trait_ontology
TO:0002702
cercospora leaf spot resistance
Causal agent: Cercospora spp.
Gramene:pankaj_jaiswal
The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a protist infection as compared to the susceptible and/or the reference plants of the same species.
plant_trait_ontology
TO:0002703
protist disease resistance
The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a protist infection as compared to the susceptible and/or the reference plants of the same species.
Gramene:pankaj_jaiswal
Causal agent: Meloidogyne incognita. Symptom: resistant to damage caused by the pathogen Meloidogyne incognita (root knot nematode). It produces characteristic galls (swellings) on roots.
plant_trait_ontology
TO:0002704
Meloidogyne incognita resistance
Causal agent: Meloidogyne incognita. Symptom: resistant to damage caused by the pathogen Meloidogyne incognita (root knot nematode). It produces characteristic galls (swellings) on roots.
Gramene:pankaj_jaiswal
Causal agent: Pseudoperonospora cubensis. It causes the downy mildew disease in cucurbits.
plant_trait_ontology
TO:0002705
cucurbit downy mildew resistance
Causal agent: Pseudoperonospora cubensis. It causes the downy mildew disease in cucurbits.
Gramene:pankaj_jaiswal
Causal agent: Meloidogyne javanica. Symptom: resistant to damage caused by the pathogen Meloidogyne javanica (root knot nematode). It produces characteristic galls (swellings) on roots.
plant_trait_ontology
TO:0002706
Meloidogyne javanica resistance
Causal agent: Meloidogyne javanica. Symptom: resistant to damage caused by the pathogen Meloidogyne javanica (root knot nematode). It produces characteristic galls (swellings) on roots.
Gramene:pankaj_jaiswal
A petiole morphology trait (TO:0000765) which is the color of the petiole (PO:0020038).
PATO:0000014
plant_trait_ontology
TO:0002707
Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts.
petiole color
A petiole morphology trait (TO:0000765) which is the color of the petiole (PO:0020038).
Gramene:pankaj_jaiswal
PO:0020038
TO:moorel
The color of the xylem tissue.
plant_trait_ontology
TO:0002708
xylem color
The color of the xylem tissue.
Gramene:pankaj_jaiswal
The color of the phloem tissue.
plant_trait_ontology
TO:0002709
phloem color
The color of the phloem tissue.
Gramene:pankaj_jaiswal
A root morphology trait (TO:0000043) which is the shape of a root (PO:0009005).
plant_trait_ontology
TO:0002710
root shape
A root morphology trait (TO:0000043) which is the shape of a root (PO:0009005).
Gramene:pankaj_jaiswal
TO:cooperl
true
A whole plant growth and development trait (TO:0000947) which is the color of plant and the photosynthetic organs remain green compared to turning yellow and or brown at the time of senescing.
plant_trait_ontology
TO:0002712
stay green trait
A whole plant growth and development trait (TO:0000947) which is the color of plant and the photosynthetic organs remain green compared to turning yellow and or brown at the time of senescing.
Gramene:pankaj_jaiswal
A plant cell morphology trait (TO:0002683) which is a quality of a cell organelle.
organelle biogenesis trait (narrow)
organelle structure trait (narrow)
plant_trait_ontology
cell organelle development trait (related)
TO:0002713
cell organelle morphology trait
A plant cell morphology trait (TO:0002683) which is a quality of a cell organelle.
Gramene:pankaj_jaiswal
TO:moorel
A plant structure growth and development trait (TO:0000928) which is a quality of plastid development.
plastid biogenesis trait (narrow)
plastid structure trait (narrow)
plant_trait_ontology
TO:0002714
plastid development trait
A plant structure growth and development trait (TO:0000928) which is a quality of plastid development.
Gramene:pankaj_jaiswal
TO:cooperl
Trait(s) associated with phenotypes observed for abnormal development of chloroplast structure and biogenesis.
chloroplast biogenesis trait (narrow)
chloroplast structure trait (narrow)
plant_trait_ontology
TO:0002715
chloroplast development trait
Trait(s) associated with phenotypes observed for abnormal development of chloroplast structure and biogenesis.
Gramene:pankaj_jaiswal
A leaf sheath morphology trait (TO: 0002717) which is the extent of pubescence (presence of hairs) on the leaf sheath auricle (PO:0020106).
plant_trait_ontology
AUPUBES (related)
TO:0002716
leaf sheath auricle pubescence
A leaf sheath morphology trait (TO: 0002717) which is the extent of pubescence (presence of hairs) on the leaf sheath auricle (PO:0020106).
Gramene:pankaj_jaiswal
PO:0020106
A cardinal organ part morphology trait (TO:0000754) which is a quality of a leaf sheath auricle (PO:0020106).
TO_GIT:143
plant_trait_ontology
TO:0002717
leaf sheath auricle morphology trait
A cardinal organ part morphology trait (TO:0000754) which is a quality of a leaf sheath auricle (PO:0020106).
Gramene:pankaj_jaiswal
PO:0020106
TO:cooperl
A cardinal organ part morphology trait (TO:0000754) which is a quality of an awn (PO:0025349).
plant_trait_ontology
TO:0002718
awn morphology trait
A cardinal organ part morphology trait (TO:0000754) which is a quality of an awn (PO:0025349).
Gramene:pankaj_jaiswal
PO:0025349
TO:moorel
An awn morphology trait (TO:0002718) which is the thickness of the awn (PO:0025349) measured at a given distance from the apiculus.
PATO:0000915
plant_trait_ontology
AWNTH (related)
TO:0002719
Refer to thickness (PATO:0000915): A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width.
awn thickness
An awn morphology trait (TO:0002718) which is the thickness of the awn (PO:0025349) measured at a given distance from the apiculus.
Gramene:pankaj_jaiswal
PO:0025349
TO:moorel
A leaf lamina morphology trait (TO:0000829) which is the width of the leaf lamina (PO:0020039).
PATO:0000921
LFLWD (exact)
plant_trait_ontology
leaf blade width (related)
TO:0002720
Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. in centimeters
leaf lamina width
A leaf lamina morphology trait (TO:0000829) which is the width of the leaf lamina (PO:0020039).
Gramene:pankaj_jaiswal
PO:0020039
TO:moorel
A leaf sheath morphology trait (TO:0000835) which is the width of the leaf sheath (PO:0020104).
PATO:0000921
plant_trait_ontology
TO:0002721
Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite.
leaf sheath width
A leaf sheath morphology trait (TO:0000835) which is the width of the leaf sheath (PO:0020104).
Gramene:pankaj_jaiswal
PO:0020104
TO:cooperl
TO:moorel
A leaf morphology trait (TO:0000748) which is the extent of pubescence (presence of hairs) on the leaf (PO:0025034).
jaiswalp
PATO:0001320
plant_trait_ontology
TO:0002722
Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down.
leaf pubescence
A leaf morphology trait (TO:0000748) which is the extent of pubescence (presence of hairs) on the leaf (PO:0025034).
Gramene:pankaj_jaiswal
PO:0025034
A leaf lamina margin morphology trait (TO:0000830) which is the extent of pubescence (presence of hairs) on a leaf lamina margin (PO:0025009).
PATO:0001320
plant_trait_ontology
LFLMPUBES (related)
leaf blade margin pubescence (related)
TO:0002723
Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down.
leaf lamina margin pubescence
A leaf lamina margin morphology trait (TO:0000830) which is the extent of pubescence (presence of hairs) on a leaf lamina margin (PO:0025009).
Gramene:pankaj_jaiswal
A leaf sheath morphology trait (TO:0000835) which is the color of the leaf sheath (PO:0020104).
PATO:0000014
plant_trait_ontology
LFSCL (related)
TO:0002724
Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts.
leaf sheath color
A leaf sheath morphology trait (TO:0000835) which is the color of the leaf sheath (PO:0020104).
Gramene:pankaj_jaiswal
PO:0020104
TO:moorel
Determined for type of life cycle being annual, biannual, perennial etc.
plant_trait_ontology
LIFECYCHAB (related)
TO:0002725
life cycle habit
Determined for type of life cycle being annual, biannual, perennial etc.
Gramene:pankaj_jaiswal
A lemma morphology trait (TO:1000023) which is the shape of a sterile lemma (PO:0009040).
TO_GIT:390
plant_trait_ontology
STLEMSHP (related)
TO:0002726
Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
sterile lemma shape
A lemma morphology trait (TO:1000023) which is the shape of a sterile lemma (PO:0009040).
Gramene:pankaj_jaiswal
PATO:0000052
PO:0009040
TO:cooperl
TO:moorel
A lemma morphology trait (TO:0000079) which is the width of a sterile lemma (PO:0009040).
TO_GIT:390
plant_trait_ontology
STLEMWD (related)
TO:0002727
Measured in the widest portion of the sterile lemma.
Refer to width PATO:0000921: A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite.
sterile lemma width
true
true
A lemma morphology trait (TO:0000079) which is the width of a sterile lemma (PO:0009040).
Gramene:pankaj_jaiswal
PATO:0000921
PO:0009040
TO:cooperl
A plant quality trait (TO:0000597) which is the commercial and /or economical value of a fruit (PO:0009001) , or its overall improvement.
TO_GIT:263
plant_trait_ontology
TO:0002728
fruit quality trait
A plant quality trait (TO:0000597) which is the commercial and /or economical value of a fruit (PO:0009001) , or its overall improvement.
Gramene:pankaj_jaiswal
TO:cooperl
Traits associated with the fruit abscission zone.
plant_trait_ontology
TO:0002729
fruit senescing quality trait
Traits associated with the fruit abscission zone.
Gramene:pankaj_jaiswal
A caryopsis fruit morphology trait (TO:0001079) which is the shape of a grain (caryopsis fruit; PO:0030104).
PATO:0000052
plant_trait_ontology
DHULGRSHP (related)
GRSHP (related)
dehulled grain shape (related)
TO:0002730
Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
grain shape
A caryopsis fruit morphology trait (TO:0001079) which is the shape of a grain (caryopsis fruit; PO:0030104).
Gramene:pankaj_jaiswal
TO:moorel
TO:cooperl
A grain size (TO:0000397) which is the grain length and grain width on dehulled grain.
PATO:0000117
PATO:0000122
PATO:0000921
plant_trait_ontology
DHULGRLGWDRO (related)
GRLHWDRO (related)
dehulled-grain length to width ratio (related)
TO:0002731
dehulled grain length to width ratio
A grain size (TO:0000397) which is the grain length and grain width on dehulled grain.
Gramene:pankaj_jaiswal
TO:moorel
In grasses the flag leaf angle is measured near the collar as the angle of attachment between the flag leaf blade and the main inflorescence axis in grass plants. Observed around anthesis stage.
plant_trait_ontology
FLFAGERLY (related)
flag leaf attitude: early stage (related)
TO:0002732
flag leaf angle: early stage
In grasses the flag leaf angle is measured near the collar as the angle of attachment between the flag leaf blade and the main inflorescence axis in grass plants. Observed around anthesis stage.
Gramene:pankaj_jaiswal
In grasses the flag leaf angle is measured near the collar as the angle of attachment between the flag leaf blade and the main inflorescence axis in grass plants. Observed at maturity stage.
plant_trait_ontology
FLFAGLATE (related)
flag leaf attitude: late stage (related)
TO:0002733
flag leaf angle: late stage
In grasses the flag leaf angle is measured near the collar as the angle of attachment between the flag leaf blade and the main inflorescence axis in grass plants. Observed at maturity stage.
Gramene:pankaj_jaiswal
An awn morphology trait (TO:0002718) which is the presence or absence of an awn (PO:0025349). Observation may include relative awn size.
PATO:0000458
plant_trait_ontology
AWNPLU (related)
TO:0002734
Refer to presence value PATO:0000458.
awn presence
An awn morphology trait (TO:0002718) which is the presence or absence of an awn (PO:0025349). Observation may include relative awn size.
Gramene:pankaj_jaiswal
PO:0025349
TO:moorel
Malformed inflorescence (panicle in rice), by staying upright/straight at the time of maturity and may carry infertile seeds.
plant_trait_ontology
TO:0002735
For rice: Straighthead is a physiological disorder that causes the entire head to be blank and remain upright at maturity in rice. Straighthead generally occurs in spots scattered throughout a field and is most easily recognized near harvest when normal plants have downturned heads (from the weight of the grain in the panicle). The disease is frequently found on sandy loam soils but seldom on clay soils. Old cotton fields with arsenic residues can have a severe incidence of straighthead. Other, as yet unknown, soil factors are also involved in causing straighthead. Often it is found in fields where excessive non-decayed vegetation has been plowed under just before planting. The disease is characterized by upright heads when the rice matures due to infertile seed. Hulls may be distorted into a crescent shape or "parrot beak". One or both hulls may be missing. Affected plants continue to grow, are a darker green, and often produce shoots from a lower portion of the plant. First year crops of rice grown on "new ground" are more likely to be affected. Some varieties are more tolerant than others. Control measures include planting resistant varieties and draining fields with a history of the disorder just prior to internode elongation.
straighthead
Malformed inflorescence (panicle in rice), by staying upright/straight at the time of maturity and may carry infertile seeds.
Gramene:pankaj_jaiswal
http://plantpathology.tamu.edu/Texlab/Grains/Rice/rices.html
An inflorescence morphology trait (TO:0000582 ) which is the number of flowers (PO:0009046).
PATO:0001555
plant_trait_ontology
TO:0002736
flower number trait
An inflorescence morphology trait (TO:0000582 ) which is the number of flowers (PO:0009046).
Gramene:pankaj_jaiswal
PO:0009046
TO:moorel
Average number of flowers (florets) per branch in a grass inflorescence.
plant_trait_ontology
FLNBPBR (related)
TO:0002737
floret number per branch
Average number of flowers (florets) per branch in a grass inflorescence.
Gramene:pankaj_jaiswal
Average number of flowers (florets) in a grass inflorescence.
florets per panicle (exact)
plant_trait_ontology
FLNBPINFLO (related)
FLNBPPN (related)
floret number per panicle (related)
florets per inflorescence (related)
TO:0002738
floret number per inflorescence
Average number of flowers (florets) in a grass inflorescence.
Gramene:pankaj_jaiswal
Average whole fruit surface area.
plant_trait_ontology
FRUTSURFAR (related)
TO:0002739
fruit surface area
Average whole fruit surface area.
Gramene:pankaj_jaiswal
true
The average surface area of the grain without hull (dehulled) in a grass fruit caryopsis.
TO:0002740
plant_trait_ontology
DHULGRSURFAR (related)
GRSURFAR (related)
dehulled-grain surface area (related)
hulled-grain surface area (related)
kernel surface area (related)
TO:0002741
grain surface area
The average surface area of the grain without hull (dehulled) in a grass fruit caryopsis.
Gramene:pankaj_jaiswal
A fruit morphology trait (TO:0002629) which is the volume of the fruit (PO:0002629).
PATO:0000918
plant_trait_ontology
TO:0002742
Refer to volume (PATO:0000918): A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies.
fruit volume
A fruit morphology trait (TO:0002629) which is the volume of the fruit (PO:0002629).
Gramene:pankaj_jaiswal
PO:0002629
A grain volume (TO:0001108) which is the volume of a dehulled grain.
PATO:0000918
DHULGRVOL (exact)
plant_trait_ontology
TO:0002743
Refer to volume (PATO:0000918): A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies.
dehulled grain volume
A grain volume (TO:0001108) which is the volume of a dehulled grain.
Gramene:pankaj_jaiswal
TO:moorel
A fruit length (TO:0002626) which is the average length of the curved surface of fruit (PO:0009001).
PATO:0000122
plant_trait_ontology
TO:0002744
Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
fruit curved length
A fruit length (TO:0002626) which is the average length of the curved surface of fruit (PO:0009001).
Gramene:pankaj_jaiswal
PO:0009001
TO:moorel
A grain length (TO:0000734) which is the curved surface of grain without hull (dehulled).
PATO:0000122
curved length of dehulled-grain (exact)
dehulled-grain curved length (exact)
plant_trait_ontology
DHULGRCURVLG (related)
TO:0002745
Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
grain curved length
A grain length (TO:0000734) which is the curved surface of grain without hull (dehulled).
Gramene:pankaj_jaiswal
TO:moorel
A fruit morphology trait (TO:0002629) that is the weight of a fruit (PO:0009001).
TO_GIT:242
plant_trait_ontology
TO:0002746
Fruit weight is the weight of one or more fruits at a specified level of maturity and, for grain, moisture level. In maize it is often reported as 100 or 1000 kernel weight, in grams and at 15% moisture content.
fruit weight
A fruit morphology trait (TO:0002629) that is the weight of a fruit (PO:0009001).
Gramene:pankaj_jaiswal
TO:cooperl
A dehulled grain weight (TO:0000590) which is the weight of a sample of 10 dehulled grains (caryopsis fruit; PO:0030104).
10 grain weight (broad)
TENGRWT (broad)
TENDHULGRWT (exact)
ten dehulled grain weight (exact)
plant_trait_ontology
ten grain weight (broad)
TO:0002747
10-dehulled grain weight
A dehulled grain weight (TO:0000590) which is the weight of a sample of 10 dehulled grains (caryopsis fruit; PO:0030104).
Gramene:pankaj_jaiswal
TO:cooperl
A vascular leaf morphology trait (TO:0000419) which is a quality of a ligule (PO:0020105).
plant_trait_ontology
TO:0002748
ligule morphology trait
A vascular leaf morphology trait (TO:0000419) which is a quality of a ligule (PO:0020105).
Gramene:pankaj_jaiswal
PO:0020105
TO:cooperl
A ligule morphology trait (TO:0002748) which is the extent of pubescence (presence of hairs) on the ligule (PO:0020105).
PATO:0001320
plant_trait_ontology
LIGPUBES (related)
TO:0002749
Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down.
ligule pubescence
A ligule morphology trait (TO:0002748) which is the extent of pubescence (presence of hairs) on the ligule (PO:0020105).
Gramene:pankaj_jaiswal
PO:0020105
TO:cooperl
A ligule morphology trait (TO:0002748) which isthe extent of pubescence (presence of hairs) on the margin of a ligule (PO:0020105).
PATO:0001320
ligule margin hairiness (exact)
plant_trait_ontology
LIGMPUBES (related)
TO:0002750
Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down.
ligule margin pubescence
A ligule morphology trait (TO:0002748) which isthe extent of pubescence (presence of hairs) on the margin of a ligule (PO:0020105).
Gramene:pankaj_jaiswal
PO:0020105
TO:cooperl
An inflorescence morphology trait (TO:0000373) which is the arrangement of inflorescence branches (PO:0009081).
TO:0002752
plant_trait_ontology
INFLBRARANGE (related)
panicle branch arrangement (related)
TO:0002751
inflorescence branch arrangement
An inflorescence morphology trait (TO:0000373) which is the arrangement of inflorescence branches (PO:0009081).
Gramene:pankaj_jaiswal
PO:0009081
TO:moorel
true
An inflorescence branch arrangement (TO:0002751) trait which is the arrangement of primary branches in an inflorescence (PO:0009049).
plant_trait_ontology
PBRARANGE (related)
arrangement of primary branch (related)
primary branch arrangement (related)
TO:0002753
arrangement of inflorescence primary branch
An inflorescence branch arrangement (TO:0002751) trait which is the arrangement of primary branches in an inflorescence (PO:0009049).
Gramene:pankaj_jaiswal
PO:0009049
TO:moorel
An inflorescence axis morphology trait (TO:0000782) which is the texture of an inflorescence axis (PO:0020122).
PATO:0000150
panicle axis texture (exact)
plant_trait_ontology
INFLOAXISTEX (related)
PNAXISTEX (related)
TO:0002754
Refers to the texture (PATO:0000150): A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics) of an inflorescence axis (PO:0020122).
inflorescence axis texture
An inflorescence axis morphology trait (TO:0000782) which is the texture of an inflorescence axis (PO:0020122).
Gramene:pankaj_jaiswal
PO:0020122
TO:cooperl
Trait(s) associated with phenotypes observed for abnormal development of cell organelle structure and its biogenesis.
plant_trait_ontology
TO:0002755
cell organelle development trait
Trait(s) associated with phenotypes observed for abnormal development of cell organelle structure and its biogenesis.
Gramene:pankaj_jaiswal
Estimated by the angle of inclination of the main shoot/stem against the soil/growth medium surface.
plant_trait_ontology
CULMHAB (related)
STEMHAB (related)
culm habit (related)
growth habit (related)
stem habit (related)
TO:0002756
shoot growth angle
Estimated by the angle of inclination of the main shoot/stem against the soil/growth medium surface.
Gramene:pankaj_jaiswal
A flag leaf morphology trait (TO:0000832) which is the length of the flag leaf (PO:0020103).
PATO:0000122
FLFLG (exact)
plant_trait_ontology
TO:0002757
Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
flag leaf length
A flag leaf morphology trait (TO:0000832) which is the length of the flag leaf (PO:0020103).
Gramene:pankaj_jaiswal
PO:0020103
TO:moorel
Actual measurements, in centimeters of the widest portion of the flag leaf lamina.
FLFLWD (exact)
flag leaf blade width (exact)
plant_trait_ontology
TO:0002758
flag leaf lamina width
Actual measurements, in centimeters of the widest portion of the flag leaf lamina.
Gramene:pankaj_jaiswal
A fruit number trait (TO:0000894) which is the number of grains (caryopsis fruit; PO:0030104) in an infructescence (PO:0006342).
PATO:0001555
plant_trait_ontology
GRNB (related)
kernel number (related)
TO:0002759
Refer to has number of (PATO:0001555): The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts.
grain number
A fruit number trait (TO:0000894) which is the number of grains (caryopsis fruit; PO:0030104) in an infructescence (PO:0006342).
Gramene:pankaj_jaiswal
PO:0006342
PO:0030104
TO:moorel
TO:cooperl
true
A grain length (TO:0000734) with hull.
plant_trait_ontology
HULGRLG (related)
hulled grain length (related)
hulled-grain length (related)
TO:0002761
Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
length of grain with hull
A grain length (TO:0000734) with hull.
Gramene:pankaj_jaiswal
A grain width (TO:0000975) with caryopsis hull (PO:0006000).
PATO:0000921
width of grain with hull (exact)
plant_trait_ontology
HULGRWD (related)
hulled grain curved width (related)
hulled grain width (related)
TO:0002762
Refer to width PATO:0000921: A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite.
hulled grain width
A grain width (TO:0000975) with caryopsis hull (PO:0006000).
Gramene:pankaj_jaiswal
TO:moorel
Average length of the curved surface of grain with hull (hulled).
PATO:0000122
plant_trait_ontology
HULGRCURVLG (related)
hulled grain curved length (related)
TO:0002763
Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
curved length of grain with hull
Average length of the curved surface of grain with hull (hulled).
Gramene:pankaj_jaiswal
The average surface area of the grain with hull (hulled) in a grass fruit caryopsis.
plant_trait_ontology
HULGRSURFAR (related)
hulled-grain surface area (related)
TO:0002764
surface area of grain with hull
The average surface area of the grain with hull (hulled) in a grass fruit caryopsis.
Gramene:pankaj_jaiswal
A grain volume (TO:0001108) which is the volume of a grain with a caryopsis hull (PO:0006000).
HULGRVOL (exact)
plant_trait_ontology
hulled caryopsis volume (related)
TO:0002765
hulled grain volume
A grain volume (TO:0001108) which is the volume of a grain with a caryopsis hull (PO:0006000).
Gramene:pankaj_jaiswal
A ligule morphology trait (TO:0002748) which is a shape of a margin of a ligule (PO:0020105).
PATO:0000052
plant_trait_ontology
LIGMSHP (related)
TO:0002766
Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's
ratios of distances between its features (points, edges, surfaces and
also holes etc).
ligule margin shape
A ligule morphology trait (TO:0002748) which is a shape of a margin of a ligule (PO:0020105).
Gramene:pankaj_jaiswal
PO:0020105
TO:cooperl
plant_trait_ontology
RHZFORM (related)
TO:0002767
rhizome formation
A spikelet morphology trait (TO:0000657) which is the length of a spikelet (PO:0009051).
PATO:0000122
plant_trait_ontology
SPKLG (related)
TO:0002768
Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
spikelet length
A spikelet morphology trait (TO:0000657) which is the length of a spikelet (PO:0009051).
Gramene:pankaj_jaiswal
PO:0009051
TO:moorel
A stem weight trait (TO:0000952) which is the fresh weight of a stem (PO:0009047).
http://orcid.org/0000-0002-8461-9745
plant_trait_ontology
TO:0003000
stem fresh weight
A stem weight trait (TO:0000952) which is the fresh weight of a stem (PO:0009047).
TO:malaporte
A stem weight trait (TO:0000952) which is the dry weight of a stem (PO:0009047).
http://orcid.org/0000-0002-8461-9745
plant_trait_ontology
TO:0003001
stem dry weight
A stem weight trait (TO:0000952) which is the dry weight of a stem (PO:0009047).
TO:malaporte
An infructescence weight trait (TO:0000583) which is the fresh weight of a stem (PO:0006342).
http://orcid.org/0000-0002-8461-9745
bunch fresh weight (narrow)
plant_trait_ontology
TO:0003002
infructescence fresh weight
An infructescence weight trait (TO:0000583) which is the fresh weight of a stem (PO:0006342).
TO:malaporte
An infructescence weight trait (TO:0000583) which is the dry weight of a stem (PO:0006342).
http://orcid.org/0000-0002-8461-9745
bunch dry weight (narrow)
plant_trait_ontology
TO:0003003
infructescence dry weight
An infructescence weight trait (TO:0000583) which is the dry weight of a stem (PO:0006342).
TO:malaporte
A fruit weight trait (TO:0002746) that is the fresh weight of a fruit (PO:0009001).
http://orcid.org/0000-0002-8461-9745
plant_trait_ontology
TO:0003004
fruit fresh weight
A fruit weight trait (TO:0002746) that is the fresh weight of a fruit (PO:0009001).
TO:malaporte
A fruit weight trait (TO:0002746) that is the dry weight of a fruit (PO:0009001).
http://orcid.org/0000-0002-8461-9745
plant_trait_ontology
TO:0003005
fruit dry weight
A fruit weight trait (TO:0002746) that is the dry weight of a fruit (PO:0009001).
TO:malaporte
A reproductive shoot system morphology trait (TO:0000786) which is a quality of the second order infructescence (PO:0025241).
http://orcid.org/0000-0002-8461-9745
plant_trait_ontology
TO:0003006
second order infructescence morphology trait
A reproductive shoot system morphology trait (TO:0000786) which is a quality of the second order infructescence (PO:0025241).
TO:malaporte
A second order infructescence morphology trait (TO:0003006) which is the fresh weight of the second order infructescence (PO:0025241).
http://orcid.org/0000-0002-8461-9745
plant_trait_ontology
TO:0003007
hand fresh weight
A second order infructescence morphology trait (TO:0003006) which is the fresh weight of the second order infructescence (PO:0025241).
TO:malaporte
A second order infructescence morphology trait (TO:0003006) which is the dry weight of the second order infructescence (PO:0025241).
http://orcid.org/0000-0002-8461-9745
plant_trait_ontology
TO:0003008
hand dry weight
A second order infructescence morphology trait (TO:0003006) which is the dry weight of the second order infructescence (PO:0025241).
TO:malaporte
A tuberous root tuber morphology trait (TO:1000007) which is the weight of a tuberous root tuber (PO:0025476).
http://orcid.org/0000-0002-8461-9745
storage root weight (exact)
plant_trait_ontology
TO:0003009
tuberous root tuber weight
A tuberous root tuber morphology trait (TO:1000007) which is the weight of a tuberous root tuber (PO:0025476).
TO:malaporte
A tuberous root tuber weight trait (TO:0003009) which is the fresh weight of a tuberous root tuber (PO:0025476).
http://orcid.org/0000-0002-8461-9745
storage root fresh weight (exact)
plant_trait_ontology
TO:0003010
tuberous root tuber fresh weight
A tuberous root tuber weight trait (TO:0003009) which is the fresh weight of a tuberous root tuber (PO:0025476).
TO:malaporte
A tuberous root tuber weight trait (TO:0003009) which is the dry weight of a tuberous root tuber (PO:0025476).
http://orcid.org/0000-0002-8461-9745
storage root dry weight (exact)
plant_trait_ontology
TO:0003011
tuberous root tuber dry weight
A tuberous root tuber weight trait (TO:0003009) which is the dry weight of a tuberous root tuber (PO:0025476).
TO:malaporte
A subterranean shoot axis tuber weight trait (TO:0000746) which is the fresh weight of a subterranean shoot axis tuber (PO:0004547).
http://orcid.org/0000-0002-8461-9745
tuber fresh weight (exact)
plant_trait_ontology
TO:0003012
subterranean shoot axis tuber fresh weight
A subterranean shoot axis tuber weight trait (TO:0000746) which is the fresh weight of a subterranean shoot axis tuber (PO:0004547).
TO:malaporte
A subterranean shoot axis tuber weight trait (TO:0000746) which is the dry weight of a subterranean shoot axis tuber (PO:0004547).
http://orcid.org/0000-0002-8461-9745
tuber dry weight (exact)
plant_trait_ontology
TO:0003013
subterranean shoot axis tuber dry weight
A subterranean shoot axis tuber weight trait (TO:0000746) which is the dry weight of a subterranean shoot axis tuber (PO:0004547).
TO:malaporte
A grain weight (TO:0000919) which is the fresh weight of a grain (caryopsis fruit; PO:0030104), including the caryopsis hull (PO:0006000).
http://orcid.org/0000-0002-8461-9745
plant_trait_ontology
TO:0003014
grain fresh weight
A grain weight (TO:0000919) which is the fresh weight of a grain (caryopsis fruit; PO:0030104), including the caryopsis hull (PO:0006000).
TO:malaporte
A grain weight (TO:0000919) which is the dry weight of a grain (caryopsis fruit; PO:0030104), including the caryopsis hull (PO:0006000).
http://orcid.org/0000-0002-8461-9745
plant_trait_ontology
TO:0003015
grain dry weight
A grain weight (TO:0000919) which is the dry weight of a grain (caryopsis fruit; PO:0030104), including the caryopsis hull (PO:0006000).
TO:malaporte
A 100-grain weight (TO:0000269) which is the fresh weight of a sample of 100 grains (caryopsis fruit; PO:0030104), with the caryopsis hull (PO:0006000).
http://orcid.org/0000-0002-8461-9745
plant_trait_ontology
TO:0003016
100-grain fresh weight
A 100-grain weight (TO:0000269) which is the fresh weight of a sample of 100 grains (caryopsis fruit; PO:0030104), with the caryopsis hull (PO:0006000).
TO:malaporte
A grain weight (TO:0000269) which is the dry weight of a sample of 100 grains (caryopsis fruit; PO:0030104), with the caryopsis hull (PO:0006000).
http://orcid.org/0000-0002-8461-9745
plant_trait_ontology
TO:0003017
100-grain dry weight
A grain weight (TO:0000269) which is the dry weight of a sample of 100 grains (caryopsis fruit; PO:0030104), with the caryopsis hull (PO:0006000).
TO:malaporte
A grain weight (TO:0000382) which is the fresh weight of a sample of 1000 grains (caryopsis fruit; PO:0030104), with the caryopsis hull (PO:0006000).
http://orcid.org/0000-0002-8461-9745
plant_trait_ontology
TO:0003018
1000-grain fresh weight
A grain weight (TO:0000382) which is the fresh weight of a sample of 1000 grains (caryopsis fruit; PO:0030104), with the caryopsis hull (PO:0006000).
TO:malaporte
A grain weight (TO:0000382) which is the dry weight of a sample of 1000 grains (caryopsis fruit; PO:0030104), with the caryopsis hull (PO:0006000).
http://orcid.org/0000-0002-8461-9745
plant_trait_ontology
TO:0003019
1000-grain dry weight
A grain weight (TO:0000382) which is the dry weight of a sample of 1000 grains (caryopsis fruit; PO:0030104), with the caryopsis hull (PO:0006000).
TO:malaporte
An infructescence weight trait (TO:0000014) which is the fresh weight of a panicle inflorescence (PO:0030123).
http://orcid.org/0000-0002-8461-9745
plant_trait_ontology
TO:0003020
panicle fresh weight
An infructescence weight trait (TO:0000014) which is the fresh weight of a panicle inflorescence (PO:0030123).
TO:malaporte
An infructescence weight trait (TO:0000014) which is the dry weight of a panicle inflorescence (PO:0030123).
http://orcid.org/0000-0002-8461-9745
plant_trait_ontology
TO:0003021
panicle dry weight
An infructescence weight trait (TO:0000014) which is the dry weight of a panicle inflorescence (PO:0030123).
TO:malaporte
An ear infructescence weight trait (TO:0000923) that is the fresh weight of an ear infructescence (PO:0025597).
http://orcid.org/0000-0002-8461-9745
plant_trait_ontology
TO:0003022
ear fresh weight
An ear infructescence weight trait (TO:0000923) that is the fresh weight of an ear infructescence (PO:0025597).
TO:malaporte
An ear infructescence weight trait (TO:0000923) that is the dry weight of an ear infructescence (PO:0025597).
http://orcid.org/0000-0002-8461-9745
plant_trait_ontology
TO:0003023
ear dry weight
An ear infructescence weight trait (TO:0000923) that is the dry weight of an ear infructescence (PO:0025597).
TO:malaporte
An cob weight trait (TO:0000922) which is the fresh weight of a cob (ear infructescence axis; PO:0025623)
http://orcid.org/0000-0002-8461-9745
plant_trait_ontology
TO:0003024
cob fresh weight
An cob weight trait (TO:0000922) which is the fresh weight of a cob (ear infructescence axis; PO:0025623)
TO:malaporte
An cob weight trait (TO:0000922) which is the dry weight of a cob (ear infructescence axis; PO:0025623)
http://orcid.org/0000-0002-8461-9745
plant_trait_ontology
TO:0003025
cob dry weight
An cob weight trait (TO:0000922) which is the dry weight of a cob (ear infructescence axis; PO:0025623)
TO:malaporte
An inflorescence weight (TO:0000803) trait which is the weight of a spike inflorescence (PO:0030117).
http://orcid.org/0000-0002-8461-9745
plant_trait_ontology
TO:0003026
spike weight
An inflorescence weight (TO:0000803) trait which is the weight of a spike inflorescence (PO:0030117).
TO:malaporte
An spike weight (TO:0003026) trait which is the fresh weight of a spike inflorescence (PO:0030117).
http://orcid.org/0000-0002-8461-9745
plant_trait_ontology
TO:0003027
spike fresh weight
An spike weight (TO:0003026) trait which is the fresh weight of a spike inflorescence (PO:0030117).
TO:malaporte
An spike weight (TO:0003026) trait which is the dry weight of a spike inflorescence (PO:0030117).
http://orcid.org/0000-0002-8461-9745
plant_trait_ontology
TO:0003028
spike dry weight
An spike weight (TO:0003026) trait which is the dry weight of a spike inflorescence (PO:0030117).
TO:malaporte
A legume fruit weight trait (TO:0001092) which is the dry weight of a legume fruit (PO:0030100).
http://orcid.org/0000-0002-8461-9745
pod dry weight (exact)
plant_trait_ontology
TO:0003029
legume fruit dry weight
A legume fruit weight trait (TO:0001092) which is the dry weight of a legume fruit (PO:0030100).
TO:malaporte
A legume fruit weight trait (TO:0001092) which is the fresh weight of a legume fruit (PO:0030100).
http://orcid.org/0000-0002-8461-9745
pod fresh weight (exact)
plant_trait_ontology
TO:0003030
legume fruit fresh weight
A legume fruit weight trait (TO:0001092) which is the fresh weight of a legume fruit (PO:0030100).
TO:malaporte
http://orcid.org/0000-0002-8461-9745
A pepo fruit morphology trait (TO:0001098) which is the weight of a pepo fruit (PO:0030111).
banana finger weight (exact)
plant_trait_ontology
TO:0003031
pepo fruit weight
A pepo fruit weight trait (TO:0003031) which is the fresh weight of a pepo fruit (PO:0030111).
http://orcid.org/0000-0002-8461-9745
banana finger fresh weight (exact)
plant_trait_ontology
TO:0003032
pepo fruit fresh weight
A pepo fruit weight trait (TO:0003031) which is the fresh weight of a pepo fruit (PO:0030111).
TO:malaporte
A pepo fruit weight trait (TO:0003031) which is the dry weight of a pepo fruit (PO:0030111).
http://orcid.org/0000-0002-8461-9745
banana finger dry weight (exact)
plant_trait_ontology
TO:0003033
pepo fruit dry weight
A pepo fruit weight trait (TO:0003031) which is the dry weight of a pepo fruit (PO:0030111).
TO:malaporte
The linoleic acid content in the essential oils present in or extracted from a plant or the plant part such as seed.
CAS:60-33-3
CHEBI:17351
(9Z,12Z)-Octadecadienoic acid content (exact)
(Z,Z)-9,12-octadecadienoic acid content (exact)
9-cis,12-cis-Octadecadienoic acid content (exact)
9Z,12Z-octadecadienoic acid content (exact)
cis,cis-linoleic acid content (exact)
linoleic oil content (exact)
high linoleic oil content (narrow)
low linoleic oil content (narrow)
plant_trait_ontology
TO:0005001
According to the Codex Alimentarium, the FAO international standards for food product specifications, the normal values may differ depending on the source plant. For example, in soybean oil the normal values for linoleic acid content are 48% - 59%.
linoleic acid content
The linoleic acid content in the essential oils present in or extracted from a plant or the plant part such as seed.
Gramene:pankaj_jaiswal
The oleic acid content in the essential oils present in or extracted from a plant or the plant part such as seed.
CAS:112-80-1
CHEBI:16196
(9Z)-Octadecenoic acid content (exact)
(9Z)-octadec-9-enoic acid content (exact)
(Z)-Octadec-9-enoic acid content (exact)
cis-9-octadecenoic acid content (exact)
high oleic oil content (narrow)
mid oleic oil content (narrow)
plant_trait_ontology
oleic oil content (related)
TO:0005002
According to the Codex Alimentarium, the FAO international standards for food product specifications, the normal values may differ depending on the source plant. For example, for soybean oil the normal values for oleic acid content are 17% - 30%.
oleic acid content
The oleic acid content in the essential oils present in or extracted from a plant or the plant part such as seed.
Gramene:pankaj_jaiswal
The stearic acid content in the essential oils present in or extracted from a plant or the plant part such as seed.
CAS:57-11-4
CHEBI:28842
n-octadecanoic acid content (exact)
octadecanoic acid content (exact)
octadecoic acid content (exact)
high stearic oil content (narrow)
low stearic oil content (narrow)
plant_trait_ontology
stearic oil content (related)
TO:0005003
According to the Codex Alimentarium, the FAO international standards for food product specifications, the normal values may differ depending on the source plant. e.g. for soybean oil the normal values for stearic acid content are 2% - 5.4%.
stearic acid content
The stearic acid content in the essential oils present in or extracted from a plant or the plant part such as seed.
Gramene:pankaj_jaiswal
The omega-3 fatty acid content in the essential oils present in or extracted from a plant or the plant part such as seed.
CHEBI:25681
plant_trait_ontology
TO:0005004
Omega-3 fatty acid (CHEBI:25681) is a polyunsaturated fatty acid (CHEBI:26208) . There are four subtypes of omega-3 fatty acids, namely, alpha-licanic acid (CHEBI:28771), all-cis-docosa-4,7,10,13,16,19-hexaenoic acid (CHEBI:28125), all-cis-icosa-5,8,11,14,17-pentaenoic acid and alpha-linolenic acid (CHEBI:27432).
omega-3 fatty acid content
The omega-3 fatty acid content in the essential oils present in or extracted from a plant or the plant part such as seed.
Gramene:pankaj_jaiswal
The alpha-linolenic acid content in the essential oils present in or extracted from a plant or the plant part such as seed.
CAS:463-40-1
CHEBI:27432
(9,12,15)-linolenic acid content (exact)
(9Z,12Z,15Z)-Octadecatrienoic acid content (exact)
(Z,Z,Z)-9,12,15-octadecatrienoic acid content (exact)
9,12,15-Octadecatrienoic acid content (exact)
9-cis,12-cis,15-cis-octadecatrienoic acid content (exact)
all-cis-9,12,15-octadecatrienoic acid content (exact)
cis,cis,cis-9,12,15-octadecatrienoic acid content (exact)
plant_trait_ontology
TO:0005005
According to the Codex Alimentarium, the FAO international standards for food product specifications, the normal values may differ depending on the source plant. For example, in soybean oil the normal values for alpha-linolenic acid content are 4.5% - 11%.
alpha-linolenic acid content
The alpha-linolenic acid content in the essential oils present in or extracted from a plant or the plant part such as seed.
Gramene:pankaj_jaiswal
An assay to determine the sensitivity (tolerance or susceptibility) exhibited by a plant or a group of plants (population) towards the applied herbicide glyphosate.
glyphosate susceptibility (narrow)
glyphosate tolerance (narrow)
plant_trait_ontology
TO:0005006
It is expected that the herbicide application must not affect the agronomic yield, if any.
glyphosate sensitivity
An assay to determine the sensitivity (tolerance or susceptibility) exhibited by a plant or a group of plants (population) towards the applied herbicide glyphosate.
Gramene:pankaj_jaiswal
An assay to determine the sensitivity (tolerance or susceptibility) exhibited by a plant or a group of plants (population) towards the applied herbicide glufosinate.
glufosinate susceptibility (narrow)
glufosinate tolerance (narrow)
plant_trait_ontology
TO:0005007
It is expected that the herbicide application must not affect the agronomic yield, if any.
glufosinate sensitivity
An assay to determine the sensitivity (tolerance or susceptibility) exhibited by a plant or a group of plants (population) towards the applied herbicide glufosinate.
Gramene:pankaj_jaiswal
An assay to determine the sensitivity (tolerance or susceptibility) exhibited by a plant or a group of plants (population) towards the applied herbicide class of acetolactate synthase inhibitor.
ALS inhibitor susceptibility (narrow)
ALS inhibitor tolerance (narrow)
acetolactate synthase inhibitor susceptibility (narrow)
acetolactate synthase inhibitor tolerance (narrow)
plant_trait_ontology
TO:0005008
It is expected that the herbicide application must not affect the agronomic yield, if any.
acetolactate synthase inhibitor sensitivity
An assay to determine the sensitivity (tolerance or susceptibility) exhibited by a plant or a group of plants (population) towards the applied herbicide class of acetolactate synthase inhibitor.
Gramene:pankaj_jaiswal
Causal agent: Ostrinia nubialis.
ECB resistance (exact)
plant_trait_ontology
TO:0005009
European corn borer resistance
Causal agent: Ostrinia nubialis.
Gramene:pankaj_jaiswal
Causal agent: Diabrotica spp.
plant_trait_ontology
TO:0005010
rootworm resistance
Causal agent: Diabrotica spp.
Gramene:pankaj_jaiswal
Tolerance to the high salt content in the growth medium.
SALTTL (exact)
plant_trait_ontology
TO:0006001
salt tolerance
Tolerance to the high salt content in the growth medium.
Gramene:pankaj_jaiswal
Amino acid proline content in a plant or plant part.
plant_trait_ontology
TO:0006002
proline content
Amino acid proline content in a plant or plant part.
Gramene:pankaj_jaiswal
Amount of oligosaccharides present in the plant or its parts.
plant_trait_ontology
TO:0006003
Oligosaccharide is a carbohydrate polymer that on hydrolysis yields a small number of monosaccharide molecules.
oligosaccharide content
Amount of oligosaccharides present in the plant or its parts.
Gramene:pankaj_jaiswal
Amount of raffinose present in the plant or plant part.
plant_trait_ontology
TO:0006004
raffinose content
Amount of raffinose present in the plant or plant part.
Gramene:pankaj_jaiswal
Amount of fructose present in the plant or plant part.
plant_trait_ontology
TO:0006005
fructose content
Amount of fructose present in the plant or plant part.
Gramene:pankaj_jaiswal
Amount of monosaccharide present in the plant or plant part.
plant_trait_ontology
TO:0006006
monosaccharide content
Amount of monosaccharide present in the plant or plant part.
Gramene:pankaj_jaiswal
Amount of polysaccharide present in the plant or plant part.
plant_trait_ontology
TO:0006007
polysaccharide content
Amount of polysaccharide present in the plant or plant part.
Gramene:pankaj_jaiswal
A carbohydrate content (TO:0000291) which is the amount of carbohydrate derivatives (CHEBI:63299) in a plant structure (PO:0009011).
CHEBI:63299
plant_trait_ontology
TO:0006008
carbohydrate derivative content
A plant organ morphology trait (TO:0000736) which is a quality of a lodicule (PO:0009036) and its parts.
TO_GIT:105
plant_trait_ontology
TO:0006009
lodicule morphology trait
A plant organ morphology trait (TO:0000736) which is a quality of a lodicule (PO:0009036) and its parts.
Gramene:pankaj_jaiswal
PO:0009036
TO:moorel
A lodicule morphology trait (TO:0006009) which is the average number of lodicules (PO:0009036) per grass flower (floret) in a study.
plant_trait_ontology
TO:0006010
lodicule number
A lodicule morphology trait (TO:0006009) which is the average number of lodicules (PO:0009036) per grass flower (floret) in a study.
Gramene:pankaj_jaiswal
PO:0009036
TO:moorel
A lodicule morphology trait (TO:0006009) which is the shape of a lodicule (PO:0009036).
PATO:0000052
plant_trait_ontology
TO:0006011
Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
lodicule shape
A lodicule morphology trait (TO:0006009) which is the shape of a lodicule (PO:0009036).
Gramene:pankaj_jaiswal
PO:0009036
TO:moorel
A megasporophyll morphology trait (TO:0000867) which is a quality of a carpel (PO:0009030).
plant_trait_ontology
TO:0006012
carpel morphology trait
A megasporophyll morphology trait (TO:0000867) which is a quality of a carpel (PO:0009030).
Gramene:pankaj_jaiswal
PO:0009030
TO:moorel
A carpel morphology trait (TO:0006012) which is the number of carpels (PO:0009030) in the gynoecium (PO:0009062).
plant_trait_ontology
TO:0006013
carpel number
A carpel morphology trait (TO:0006012) which is the number of carpels (PO:0009030) in the gynoecium (PO:0009062).
Gramene:pankaj_jaiswal
PO:0009030
PO:0009062
TO:moorel
A leaf morphology trait (TO:0000748) which is the arrangement of the leaves on the shoot of a plant.
leaf arrangement (exact)
plant_trait_ontology
TO:0006014
phyllotaxy
A leaf morphology trait (TO:0000748) which is the arrangement of the leaves on the shoot of a plant.
Gramene:pankaj_jaiswal
TO:cooperl
Traits associated with observing effects on the development of a given tissue type.
plant_trait_ontology
TO:0006015
plant tissue development trait
Traits associated with observing effects on the development of a given tissue type.
Gramene:pankaj_jaiswal
An assay to determine the variation in the meristematic tissue development.
plant_trait_ontology
TO:0006016
meristem tissue development trait
An assay to determine the variation in the meristematic tissue development.
Gramene:pankaj_jaiswal
Trait to determine the variation or effect on the establishment of meristem identity or determinacy.
meristem determinacy (exact)
plant_trait_ontology
TO:0006017
meristem identity
Trait to determine the variation or effect on the establishment of meristem identity or determinacy.
Gramene:pankaj_jaiswal
Trait associated with observing effects on the establishment of organ identity.
plant_trait_ontology
TO:0006018
Identity is considered to be the aggregate of characteristics by which a structure is recognized.
organ identity
Trait associated with observing effects on the establishment of organ identity.
Gramene:pankaj_jaiswal
Trait associated with observing effects on the establishment of floral organ identity.
plant_trait_ontology
TO:0006019
floral organ identity
Trait associated with observing effects on the establishment of floral organ identity.
Gramene:pankaj_jaiswal
An assay to associate observing effects on the development of shoot apical (SAM) meristem.
plant_trait_ontology
TO:0006020
shoot apical meristem development
An assay to associate observing effects on the development of shoot apical (SAM) meristem.
Gramene:pankaj_jaiswal
Trait associated with the transition of vegetative growth phase to the reproductive growth phase.
plant_trait_ontology
TO:0006021
Usually observed at the time of transition of shoot apical meristem (a vegetative meristem) to the inflorescence apical meristem (a reproductive meristem).
vegetative to reproductive phase transition trait
Trait associated with the transition of vegetative growth phase to the reproductive growth phase.
Gramene:pankaj_jaiswal
Traits associated with observing effects on the development of the floral organ and its parts.
plant_trait_ontology
TO:0006022
floral organ development trait
Traits associated with observing effects on the development of the floral organ and its parts.
Gramene:pankaj_jaiswal
Traits associated with observing effects on the development of the lodicule in a grass flower (floret).
plant_trait_ontology
TO:0006023
lodicule development trait
Traits associated with observing effects on the development of the lodicule in a grass flower (floret).
Gramene:pankaj_jaiswal
Ectopic development of lodicule in a grass flower (floret).
plant_trait_ontology
TO:0006024
ectopic lodicule development
Ectopic development of lodicule in a grass flower (floret).
Gramene:pankaj_jaiswal
Traits associated with observing effects on the development of the floral bracts.
plant_trait_ontology
TO:0006025
flower bract development trait
Traits associated with observing effects on the development of the floral bracts.
Gramene:pankaj_jaiswal
A flower morphology trait (TO:0000499) which is the number of flower bracts (TO:0006026).
plant_trait_ontology
TO:0006026
flower bract number
A flower morphology trait (TO:0000499) which is the number of flower bracts (TO:0006026).
Gramene:pankaj_jaiswal
An inflorescence development trait (TO:0000621) which is the quality of the development of an inflorescence bract (PO:0009054).
plant_trait_ontology
TO:0006027
inflorescence bract development trait
An inflorescence development trait (TO:0000621) which is the quality of the development of an inflorescence bract (PO:0009054).
Gramene:pankaj_jaiswal
TO:cooperl
Number of given type of bracts in a inflorescence.
plant_trait_ontology
TO:0006028
inflorescence bract number
Number of given type of bracts in a inflorescence.
Gramene:pankaj_jaiswal
Number of glumes in an inflorescence of grass, sedge or similar plant.
plant_trait_ontology
TO:0006029
glume number
Number of glumes in an inflorescence of grass, sedge or similar plant.
Gramene:pankaj_jaiswal
Trait associated to observed effect on the establishment of spikelet meristem identity or determinacy.
plant_trait_ontology
TO:0006030
spikelet meristem identity
Trait associated to observed effect on the establishment of spikelet meristem identity or determinacy.
Gramene:pankaj_jaiswal
An inflorescence morphology trait (TO:0000373) which is the variation in size of inflorescence (PO:0009049).
PATO:0000117
plant_trait_ontology
TO:0006031
Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.
inflorescence size
An inflorescence morphology trait (TO:0000373) which is the variation in size of inflorescence (PO:0009049).
Gramene:pankaj_jaiswal
PO:0009049
TO:moorel
A panicle inflorescence morphology trait (TO:0000847) which is the variation in size of panicle inflorescence (PO:0030123).
plant_trait_ontology
TO:0006032
panicle inflorescence size
A panicle inflorescence morphology trait (TO:0000847) which is the variation in size of panicle inflorescence (PO:0030123).
Gramene:pankaj_jaiswal
TO:moorel
Number of florets in a grass spikelet.
plant_trait_ontology
FLNBPSPK (related)
TO:0006033
floret number per spikelet
Number of florets in a grass spikelet.
Gramene:pankaj_jaiswal
A tertiary branching of inflorescence (TO:0006035) trait which is the number of tertiary branches in an inflorescence (PO:0009049).
plant_trait_ontology
TO:0006034
tertiary branch number
A tertiary branching of inflorescence (TO:0006035) trait which is the number of tertiary branches in an inflorescence (PO:0009049).
Gramene:pankaj_jaiswal
PO:0009049
TO:moorel
An inflorescence branching (TO:0000050) trait which is the extent of tertiary branching that usually determines the shape and compactness of the inflorescence (PO:0009049) (such as in rice panicle).
plant_trait_ontology
TO:0006035
tertiary branching of inflorescence
An inflorescence branching (TO:0000050) trait which is the extent of tertiary branching that usually determines the shape and compactness of the inflorescence (PO:0009049) (such as in rice panicle).
Gramene:pankaj_jaiswal
PO:0009049
TO:moorel
Elongation of the stem.
plant_trait_ontology
TO:0006036
Alternative associated traits are stem length (TO:0000576) and shoot elongation rate (TO:0000368).
stem elongation
Elongation of the stem.
Gramene:pankaj_jaiswal
A carpel morphology trait (TO:0006012) which is the shape of a carpel (PO:0009030).
PATO:0000052
plant_trait_ontology
TO:0006037
Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
carpel shape
A carpel morphology trait (TO:0006012) which is the shape of a carpel (PO:0009030).
Gramene:pankaj_jaiswal
PO:0009030
TO:moorel
A floral organ morphology trait (TO:0000862) which is the number of floral organ (PO:0025395) types in a flower (PO:0009046).
plant_trait_ontology
TO:0006038
floral organ number
A floral organ morphology trait (TO:0000862) which is the number of floral organ (PO:0025395) types in a flower (PO:0009046).
Gramene:pankaj_jaiswal
PO:0009046
TO:moorel
A petal morphology trait (TO:0000863) which is the number of petals (PO:0009032) in a flower (PO:0009049).
plant_trait_ontology
TO:0006039
petal number
A petal morphology trait (TO:0000863) which is the number of petals (PO:0009032) in a flower (PO:0009049).
Gramene:pankaj_jaiswal
PO:0009032
PO:0009049
TO:moorel
A sepal morphology trait (TO:0000864) which is the number of the sepals (PO:0009031) in a flower (PO:0009049).
plant_trait_ontology
TO:0006040
sepal number
A sepal morphology trait (TO:0000864) which is the number of the sepals (PO:0009031) in a flower (PO:0009049).
Gramene:pankaj_jaiswal
PO:0009031
PO:0009049
TO:moorel
A tepal morphology trait (TO:0000865) which is the number of the tepals (PO:0009033) in a flower (PO:0009049).
plant_trait_ontology
TO:0006041
tepal number
A tepal morphology trait (TO:0000865) which is the number of the tepals (PO:0009033) in a flower (PO:0009049).
Gramene:pankaj_jaiswal
PO:0009033
PO:0009049
TO:moorel
A mineral and ion content trait (TO:0000465) which is the lithium cation (CHEBI:49713) composition in a plant structure (PO:0009011).
jaiswalp
2010-10-25T10:36:57Z
plant_trait_ontology
TO:0006042
May be assayed for per gram fresh weight.
lithium content
A mineral and ion content trait (TO:0000465) which is the lithium cation (CHEBI:49713) composition in a plant structure (PO:0009011).
Gramene:Karthik
TO:cooperl
A mineral and ion content trait (TO:0000465) which is the boron cation (CHEBI:30168) composition in a plant structure (PO:0009011).
jaiswalp
2010-10-25T04:49:08Z
plant_trait_ontology
TO:0006043
boron content
A mineral and ion content trait (TO:0000465) which is the boron cation (CHEBI:30168) composition in a plant structure (PO:0009011).
Gramene:Karthik
TO:cooperl
A mineral and ion content trait (TO:0000465) which is the magnesium cation (CHEBI:18420) composition in a plant structure (PO:0009011).
jaiswalp
2010-10-25T04:51:26Z
plant_trait_ontology
TO:0006044
magnesium content
A mineral and ion content trait (TO:0000465) which is the magnesium cation (CHEBI:18420) composition in a plant structure (PO:0009011).
Gramene:Karthik
TO:cooperl
A phosphorus content (TO:0001024) which is the concentration of phosphorus (CHEBI:26082) in some plant structure (PO:0009011)
jaiswalp
2010-10-25T04:51:26Z
CHEBI:26082
plant_trait_ontology
TO:0006045
phosphorus concentration
A phosphorus content (TO:0001024) which is the concentration of phosphorus (CHEBI:26082) in some plant structure (PO:0009011)
Gramene:Karthik
A mineral and ion content trait (TO:0000465) which is the sulfur cation (CHEBI:29832) composition in a plant structure (PO:0009011).
jaiswalp
2010-10-25T10:36:57Z
plant_trait_ontology
TO:0006046
sulfur content
A mineral and ion content trait (TO:0000465) which is the sulfur cation (CHEBI:29832) composition in a plant structure (PO:0009011).
Gramene:Karthik
TO:cooperl
A mineral and ion content trait (TO:0000465) which is the calcium cation (CHEBI:39123) composition in a plant structure (PO:0009011).
jaiswalp
2010-10-25T04:54:15Z
plant_trait_ontology
TO:0006047
calcium content trait
A mineral and ion content trait (TO:0000465) which is the calcium cation (CHEBI:39123) composition in a plant structure (PO:0009011).
Gramene:Karthik
TO:cooperl
A manganese content (TO:0020091) which is the concentration of manganese (CHEBI:25154) in some plant structure (PO:0009011)
jaiswalp
2010-10-25T04:55:34Z
CHEBI:25154
plant_trait_ontology
TO:0006048
manganese concentration
A manganese content (TO:0020091) which is the concentration of manganese (CHEBI:25154) in some plant structure (PO:0009011)
Gramene:Karthik
An iron content (TO:0020089) which is the concentration of iron cation (CHEBI:24875) in a plant structure (PO:0009011)
jaiswalp
2010-10-25T04:56:30Z
CHEBI:24873
plant_trait_ontology
TO:0006049
iron concentration
An iron content (TO:0020089) which is the concentration of iron cation (CHEBI:24875) in a plant structure (PO:0009011)
Gramene:Karthik
A cobalt content trait (TO:0001044) which is the concentration of cobalt cation (CHEBI:23336) in a plant structure (PO:0009011).
jaiswalp
2010-10-25T10:36:57Z
plant_trait_ontology
TO:0006050
cobalt concentration
A cobalt content trait (TO:0001044) which is the concentration of cobalt cation (CHEBI:23336) in a plant structure (PO:0009011).
Gramene:Karthik
TO:cooperl
A mineral and ion content trait (TO:0000465) which is the nickel cation (CHEBI:25516) composition in a plant structure (PO:0009011).
jaiswalp
2010-10-25T04:58:31Z
plant_trait_ontology
TO:0006051
nickel content
A mineral and ion content trait (TO:0000465) which is the nickel cation (CHEBI:25516) composition in a plant structure (PO:0009011).
Gramene:Karthik
TO:cooperl
A copper content (TO:0020092) which is the concentration of copper (CHEBI:23377) in a plant structure (PO:0009011).
jaiswalp
2010-10-25T04:59:17Z
CHEBI:23377
plant_trait_ontology
TO:0006052
copper concentration
A copper content (TO:0020092) which is the concentration of copper (CHEBI:23377) in a plant structure (PO:0009011).
Gramene:Karthik
TO:cooperl
A zinc content (TO:0020090) which is the concentration of zinc (CHEBI:63056) in some plant structure (PO:0009011)
jaiswalp
2010-10-25T04:59:26Z
plant_trait_ontology
TO:0006053
zinc concentration
A zinc content (TO:0020090) which is the concentration of zinc (CHEBI:63056) in some plant structure (PO:0009011)
CHEBI:63056
Gramene:Karthik
A mineral and ion content trait (TO:0000465) which is the arsenic cation (CHEBI:35829) composition in a plant structure (PO:0009011).
jaiswalp
2010-10-25T04:59:32Z
plant_trait_ontology
TO:0006054
arsenic content trait
A mineral and ion content trait (TO:0000465) which is the arsenic cation (CHEBI:35829) composition in a plant structure (PO:0009011).
Gramene:Karthik
TO:cooperl
A mineral and ion content trait (TO:0000465) which is the selenium ion (CHEBI:60250) composition in a plant structure (PO:0009011).
jaiswalp
2010-10-25T04:59:38Z
plant_trait_ontology
TO:0006055
selenium content
A mineral and ion content trait (TO:0000465) which is the selenium ion (CHEBI:60250) composition in a plant structure (PO:0009011).
Gramene:Karthik
TO:cooperl
A mineral and ion content trait (TO:0000465) which is the molybdenum cation (CHEBI:37239) composition in a plant structure (PO:0009011).
jaiswalp
2010-10-25T04:59:53Z
plant_trait_ontology
TO:0006056
molybdenum content
A mineral and ion content trait (TO:0000465) which is the molybdenum cation (CHEBI:37239) composition in a plant structure (PO:0009011).
Gramene:Karthik
TO:cooperl
The total Cu2+ ion concentration measured in a given volume of a plant or a plant part or plant extract.
jaiswalp
2010-10-25T05:04:14Z
plant_trait_ontology
TO:0006057
cuperous ion concentration
The total Cu2+ ion concentration measured in a given volume of a plant or a plant part or plant extract.
Gramene:pankaj_jaiswal
The total Cu3+ ion concentration measured in a given volume of a plant or a plant part or plant extract.
jaiswalp
2010-10-25T05:04:19Z
plant_trait_ontology
TO:0006058
cuperic ion concentration
The total Cu3+ ion concentration measured in a given volume of a plant or a plant part or plant extract.
Gramene:pankaj_jaiswal
A mineral and ion content trait (TO:0000465) which is the cadmium cation (CHEBI:63063) composition in a plant structure (PO:0009011).
jaiswalp
2010-10-25T10:36:57Z
plant_trait_ontology
TO:0006059
cadmium content trait
A mineral and ion content trait (TO:0000465) which is the cadmium cation (CHEBI:63063) composition in a plant structure (PO:0009011).
Gramene:Karthik
TO:cooperl
A leaf color trait (TO:0006060) describing the yellowing of leaves, due to insufficient production of chlorophyll.
jaiswalp
2010-10-25T05:13:05Z
TO:0020113
plant_trait_ontology
TO:0006060
Leaf surface affected by abiotic stresses like insecticides and cold temperature as evidenced by chlorotic tissue.
leaf chlorosis
A leaf color trait (TO:0006060) describing the yellowing of leaves, due to insufficient production of chlorophyll.
Gramene:Karthik
TO:moorel
Number of days taken from the day of sowing to the first emergence of cotyledons or hypocotyl.
jaiswalp
2010-10-25T05:23:52Z
plant_trait_ontology
TO:0006061
days to germinate
Number of days taken from the day of sowing to the first emergence of cotyledons or hypocotyl.
Gramene:curators
The average width of a plant measured across an axis such as the main stem/stalk.
jaiswalp
2010-10-25T05:27:37Z
plant_trait_ontology
TO:0006062
plant width
The average width of a plant measured across an axis such as the main stem/stalk.
Gramene:pankaj_jaiswal
A leaf margin morphology trait (TO:0002635) which is a notched or grooved leaf margin (PO:0020128).
jaiswalp
2010-10-25T05:30:17Z
PATO:0001206
plant_trait_ontology
TO:0006063
Refer to serrated (PATO:0001206): A shape quality inhering in a bearer by virtue of having sharp straight-edged teeth pointing to the apex.
leaf margin serrated
A leaf margin morphology trait (TO:0002635) which is a notched or grooved leaf margin (PO:0020128).
Gramene:curators
PO:0020128
TO:cooperl
Leaf lamina rolled into a tube like structure.
jaiswalp
2010-10-25T05:34:19Z
plant_trait_ontology
TO:0006064
rolled leaf
Leaf lamina rolled into a tube like structure.
Gramene:Karthik
A seedling hypocotyl morphology trait (TO:0000769) which is the length of a seedling hypocotyl (PO:0025291).
jaiswalp
2010-10-25T05:36:01Z
PATO:0000122
TO_GIT:64
plant_trait_ontology
TO:0006065
seedling hypocotyl length
A seedling hypocotyl morphology trait (TO:0000769) which is the length of a seedling hypocotyl (PO:0025291).
Gramene:Karthik
PO:0025291
TO:cooperl
Measurement of trichomes found in per unit area of a leaf.
jaiswalp
2010-10-25T05:37:25Z
plant_trait_ontology
TO:0006066
leaf trichome density
Measurement of trichomes found in per unit area of a leaf.
Gramene:curators
Resistance displayed by the plant to the aphid infestation.
jaiswalp
2010-10-25T05:38:56Z
plant_trait_ontology
TO:0006067
Aphids are members of the insect order Homoptera, family Aphididae.
aphid resistance
Resistance displayed by the plant to the aphid infestation.
Gramene:pankaj_jaiswal
Measure of the seed's germination ability in dark.
jaiswalp
2010-10-25T05:42:12Z
plant_trait_ontology
TO:0006068
germinability in dark
Measure of the seed's germination ability in dark.
Gramene:curators
A measure of seed dormancy defined as the days of seed dry storage required to reach 50% germination (DSDS50).
jaiswalp
2010-10-25T05:44:20Z
plant_trait_ontology
TO:0006069
DSDS50
A measure of seed dormancy defined as the days of seed dry storage required to reach 50% germination (DSDS50).
Gramene:Karthik
The percentage of seeds that germinate against the total number of seeds planted.
plant_trait_ontology
TO:0010001
percent germination
The percentage of seeds that germinate against the total number of seeds planted.
Gramene:pankaj_jaiswal
Describes the way different colors, their hue and shades are distributed on a leaf lamina and its parts such as leaf margin, leaf tip, leaf veins.
plant_trait_ontology
LFLCLDIST (related)
TO:0011001
leaf lamina color distribution
Describes the way different colors, their hue and shades are distributed on a leaf lamina and its parts such as leaf margin, leaf tip, leaf veins.
Gramene:pankaj_jaiswal
An inflorescence primary branch morphology trait (TO:0000846) which is the attitude of a second order inflorescence axis (PO:0006321) in terms of upright and drooping characters.
plant_trait_ontology
INFLPBRAATT (related)
TO:0011002
Associated to the trait inflorescence type (TO:0000267).
inflorescence primary branch attitude
An inflorescence primary branch morphology trait (TO:0000846) which is the attitude of a second order inflorescence axis (PO:0006321) in terms of upright and drooping characters.
Gramene:pankaj_jaiswal
PO:0006321
TO:moorel
An inflorescence axis morphology trait (TO:0000782) which is the color of an inflorescence axis (PO:0020122).
PATO:0000014
plant_trait_ontology
INFLAXISCL (related)
TO:0011003
Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts.
inflorescence axis color
An inflorescence axis morphology trait (TO:0000782) which is the color of an inflorescence axis (PO:0020122).
Gramene:pankaj_jaiswal
PO:0020122
TO:moorel
An inflorescence branch morphology trait (TO:0000784) which is the color of the inflorescence branch (PO:0009081).
PATO:0000014
plant_trait_ontology
INFLBRACL (related)
panicle branch color (related)
TO:0011004
Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts.
inflorescence branch color
An inflorescence branch morphology trait (TO:0000784) which is the color of the inflorescence branch (PO:0009081).
Gramene:pankaj_jaiswal
PO:0009081
TO:moorel
Length of the leaf penultimate to the first leaf below the inflorescence.
plant_trait_ontology
PENLFLG (related)
second leaf length (related)
TO:0011005
In case of cereal crop plants such as rice, corn, wheat etc., first leaf below the inflorescence or the last leaf on the shoot is called the flag leaf. Penultimate leaf is the one below flag leaf.
penultimate leaf length
Length of the leaf penultimate to the first leaf below the inflorescence.
Gramene:pankaj_jaiswal
Lamina width of the leaf penultimate to the first leaf below the inflorescence.
plant_trait_ontology
PENLFLWD (related)
second leaf width (related)
TO:0011006
In case of cereal crop plants such as rice, corn, wheat etc., first leaf below the inflorescence or the last leaf on the shoot is called the flag leaf. Penultimate leaf is the one below flag leaf.
penultimate leaf lamina width
Lamina width of the leaf penultimate to the first leaf below the inflorescence.
Gramene:pankaj_jaiswal
An awn morphology trait (TO:0002718) which is the width of the awn (PO:0025349).
PATO:0000921
plant_trait_ontology
AWNWD (related)
TO:0011007
Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite.
awn width
An awn morphology trait (TO:0002718) which is the width of the awn (PO:0025349).
Gramene:pankaj_jaiswal
PO:0025349
TO:moorel
A floral organ length (TO:0002614) that is the length of the stigma (PO:0009073).
plant_trait_ontology
STIGLG (related)
TO:0011008
stigma length
A floral organ length (TO:0002614) that is the length of the stigma (PO:0009073).
Gramene:pankaj_jaiswal
A floral organ length (TO:0002614) that is the length of the style (PO:0009074).
PATO:0000122
TO_GIT:113
silk length (narrow)
plant_trait_ontology
STYLLG (related)
TO:0011009
style length
A floral organ length (TO:0002614) that is the length of the style (PO:0009074).
Gramene:pankaj_jaiswal
Color of the spatial section of the internode that is found proximal (next) to the colored node of a stem.
plant_trait_ontology
INCLPROXNDCL (related)
TO:0011010
internode color in proxomity to colored node
Color of the spatial section of the internode that is found proximal (next) to the colored node of a stem.
Gramene:pankaj_jaiswal
Leaf Area Index (LAI) is the ratio of total upper leaf surface of vegetation divided by the surface area of the land on which the vegetation grows.
jaiswalp
2011-12-09T01:27:39Z
plant_trait_ontology
TO:0012001
LAI is used to predict photosynthetic primary production and as a reference tool for crop growth. Measured on the plant canopy only.
leaf area index
Leaf Area Index (LAI) is the ratio of total upper leaf surface of vegetation divided by the surface area of the land on which the vegetation grows.
Wikipedia:Leaf_area_index
A chlorophyll content trait (TO:0000495) which is the chlorophyll content of a leaf (PO:0025034).
jaiswalp
2011-12-09T01:52:17Z
TO_GIT:275
plant_trait_ontology
TO:0012002
leaf chlorophyll content
A chlorophyll content trait (TO:0000495) which is the chlorophyll content of a leaf (PO:0025034).
PO:0025034
TO:cooperl
OBSOLETE
'TO:0000495'
jaiswalp
2011-12-09T01:54:09Z
plant_trait_ontology
TO:0012003
OBSOLETE chlorophyll content in an extract
true
jaiswalp
2011-12-09T02:09:21Z
plant_trait_ontology
QY (related)
TO:0012004
quantum yield
jaiswalp
2011-12-09T02:09:52Z
plant_trait_ontology
OJIP (related)
TO:0012005
chlorophyll fluorescence induction kinetics
jaiswalp
2011-12-09T02:12:03Z
plant_trait_ontology
TO:0012006
fluorescence related trait
jaiswalp
2011-12-09T02:13:21Z
plant_trait_ontology
TO:0012007
quantum yield determined by the light curve
jaiswalp
2011-12-09T02:16:09Z
plant_trait_ontology
TO:0012008
quantum yield at a given wavelength
jaiswalp
2011-12-09T02:18:08Z
plant_trait_ontology
F<sub>T</sub> (related)
TO:0012009
continuous fluorescence yield
Leaf Area Duration (LAD) is the ratio of total upper leaf surface of vegetation divided by the surface area of the land on which the vegetation grows. Measured over time.
jaiswalp
2011-12-09T02:28:13Z
plant_trait_ontology
LAD (related)
TO:0012010
leaf area duration
Leaf Area Duration (LAD) is the ratio of total upper leaf surface of vegetation divided by the surface area of the land on which the vegetation grows. Measured over time.
group:Crop_Ontology_Group
Rate of loss of normal leaf color over time.
jaiswalp
2011-12-09T02:34:15Z
plant_trait_ontology
TO:0012011
leaf senescence rate
Rate of loss of normal leaf color over time.
group:Crop_Ontology_Group
Time taken to lose normal leaf color.
jaiswalp
2011-12-09T02:35:49Z
plant_trait_ontology
TO:0012012
In grasses often measured for flag or the second leaf from top.
leaf senescence duration
Time taken to lose normal leaf color.
group:Crop_Ontology_Group
A panicle inflorescence morphology trait (TO:0000847) which is the compactness of a panicle inflorescence (PO:0030123).
PATO:0000052
PATO:0001485
plant_trait_ontology
TO:0020001
Refer to compact (PATO:0001485): A structural quality inhering in a bearer by virtue of the bearer's being thicker or more closely packed together; pressed tightly together. Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
panicle inflorescence compactness
A panicle inflorescence morphology trait (TO:0000847) which is the compactness of a panicle inflorescence (PO:0030123).
TO:moorel
A grain yield trait (TO:0000396) which is the ratio of grain weight (TO:0000919) to panicle weight (TO:0000014).
TO_GIT:242
plant_trait_ontology
TO:0020002
Grain weight (TO:0000919) is a general parent term, covering the weights of various types of caryopsis fruits (PO:0030104), and doesn't specify if they are hulled or dehulled.
grain weight to panicle weight ratio
A grain yield trait (TO:0000396) which is the ratio of grain weight (TO:0000919) to panicle weight (TO:0000014).
TO:cooperl
A potassium content trait (TO:0000609) which is the potassium cation (CHEBI:29103) composition in a shoot system (PO:0009006).
plant_trait_ontology
TO:0020003
shoot system potassium content
A potassium content trait (TO:0000609) which is the potassium cation (CHEBI:29103) composition in a shoot system (PO:0009006).
Gramene:cwt
ICRIS:019
TO:cooperl
https://search.proquest.com/docview/1426182399
A sodium content trait (TO:0000608) which is the sodium cation (CHEBI:29101) composition in a shoot system (PO:0009006).
plant_trait_ontology
TO:0020004
shoot system sodium content
A sodium content trait (TO:0000608) which is the sodium cation (CHEBI:29101) composition in a shoot system (PO:0009006).
Gramene:cwt
ICRIS:018
TO:cooperl
https://search.proquest.com/docview/1426182399
Causative agent: Chilo partellus. Infections causes the appearance of small elongated holes in young whorl leaves, tunelling of earheads results in breakage or chaffy earheads affecting grain development.
plant_trait_ontology
TO:0020005
sorghum stem borer resistance
Causative agent: Chilo partellus. Infections causes the appearance of small elongated holes in young whorl leaves, tunelling of earheads results in breakage or chaffy earheads affecting grain development.
GCP:053
Gramene:cwt6
plant_trait_ontology
TO:0020006
chickpea pod borer
Causative agent: Atherigona soccata. Larval feeding results in central leaf wilting and drying causing the typical deadheart symptom.
plant_trait_ontology
TO:0020007
sorghum shoot fly resistance
Causative agent: Atherigona soccata. Larval feeding results in central leaf wilting and drying causing the typical deadheart symptom.
GCP:051
Gramene:cwt6
Causative agent: Aspergillus spp and Penicillium spp. Trait is measured as extent of grain surface covered with mold.
plant_trait_ontology
TO:0020008
sorghum grain mold
Causative agent: Aspergillus spp and Penicillium spp. Trait is measured as extent of grain surface covered with mold.
Gramene:cwt
ICRIS:050
Causative agent: Puccinia purpurea. Infection causes purple, red or tan flecks on both surfaces of leaves, leaving a reddish powder on fingers when passed over it.
plant_trait_ontology
TO:0020009
sorghum rust resistance
Causative agent: Puccinia purpurea. Infection causes purple, red or tan flecks on both surfaces of leaves, leaving a reddish powder on fingers when passed over it.
Gramene:cwt
ICRIS:049
Causative agent:Peronospora sp. It causes abundant downy white growth on the under surfaces of infected portions of leaves during humid weather, mature infected leaves become necrotic and intervenal tissues disintegrate to give the typical shredded leaf symptom.
plant_trait_ontology
TO:0020010
sorghum downy mildew resistance
Causative agent:Peronospora sp. It causes abundant downy white growth on the under surfaces of infected portions of leaves during humid weather, mature infected leaves become necrotic and intervenal tissues disintegrate to give the typical shredded leaf symptom.
Gramene:cwt
ICRIS:047
plant_trait_ontology
TO:0020011
chickpea botrytis grey mold resistance
plant_trait_ontology
TO:0020012
chickpea fusarium wild resistance
plant_trait_ontology
TO:0020013
chickpea colleotrichum blight resistance
plant_trait_ontology
TO:0020014
chickpea ascochyta blight resistance
TO_GIT:69
plant_trait_ontology
TO:0020015
sorghum leaf blight resistance
A seed morphology trait (TO:0000184) which is the texture of a seed (PO:0009010).
TO:0000150
TO_GIT:213
plant_trait_ontology
TO:0020016
Refer to texture PATO:0000150: A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics.
seed texture
A seed morphology trait (TO:0000184) which is the texture of a seed (PO:0009010).
PO:0009010
TO:moorel
A seed coat pattern trait (TO:0000904) where the seed coat (PO:0009088) has colored spots.
PATO:0000333
TO_GIT:148
plant_trait_ontology
TO:0020017
Refer to spotted (PATO:0000333): A color pattern inhering in a bearer by virtue of bearer's being marked with a round area of different hue or degree of saturation.
seed coat spotted
A seed coat pattern trait (TO:0000904) where the seed coat (PO:0009088) has colored spots.
PO:0009088
TO:moorel
plant_trait_ontology
TO:0020018
tertiary shoot branch number
plant_trait_ontology
TO:0020019
secondary shoot branch number
plant_trait_ontology
TO:0020020
primary shoot branch number
plant_trait_ontology
TO:0020021
basal axillary tertiary branch number
plant_trait_ontology
TO:0020022
basal axillary secondary branch number
plant_trait_ontology
TO:0020023
basal axillary primary branch number
plant_trait_ontology
TO:0020024
basal axillary branch number
plant_trait_ontology
TO:0020025
apical axillary tertiary branch number
plant_trait_ontology
TO:0020026
apical axillary secondary branch number
plant_trait_ontology
TO:0020027
apical axillary primary branch number
Gramene:cwt6
plant_trait_ontology
TO:0020028
apical axillary branch number
Length of pubescence (presence of hairs) on the leaf blade surface.
plant_trait_ontology
TO:0020029
leaf lamina pubscence length
Length of pubescence (presence of hairs) on the leaf blade surface.
Gramene:cwt
Density of pubescence (presence of hairs) on the leaf blade surface.
plant_trait_ontology
TO:0020030
leaf lamina pubescence density
Density of pubescence (presence of hairs) on the leaf blade surface.
Gramene:cwt
A leaf lamina margin pudescence (TO:0002723) trait which is the length of pubescence (presence of hairs) on the leaf lamina margin (PO:0025009).
PATO:0000122
PATO:0001320
plant_trait_ontology
TO:0020031
Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down. Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
leaf lamina margin pubescence length
A leaf lamina margin pudescence (TO:0002723) trait which is the length of pubescence (presence of hairs) on the leaf lamina margin (PO:0025009).
Gramene:cwt
PO:0025009
TO:moorel
A leaf lamina margin pubescence trait (TO:0002723) which is the density of pubescence (presence of hairs) on the leaf lamina margin (PO:0025009).
PATO:0001019
PATO:0001320
plant_trait_ontology
TO:0020032
Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down. Refer to density (PATO:0001019): A physical quality which inheres in a bearer by virtue of some influence is exerted by the bearer's mass per unit size.
leaf lamina margin pubescence density
A leaf lamina margin pubescence trait (TO:0002723) which is the density of pubescence (presence of hairs) on the leaf lamina margin (PO:0025009).
Gramene:cwt6
PO:002009
TO:moorel
A glume morphology trait (TO:0000869) which is the length of a glume (PO:0009039) measured in mm (millimeter).
PATO:0000122
plant_trait_ontology
TO:0020033
Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
glume length
A glume morphology trait (TO:0000869) which is the length of a glume (PO:0009039) measured in mm (millimeter).
Gramene:cwt
IWIS:1420
PO:0009039
TO:moorel
A glume morphology trait (TO:0000869) with is the measurement of width of glume (PO:0009039) in mm (millimeter).
PATO:0000921
plant_trait_ontology
TO:0020034
Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite.
glume width
A glume morphology trait (TO:0000869) with is the measurement of width of glume (PO:0009039) in mm (millimeter).
Gramene:cwt
IWIS:1421
PO:0009039
TO:moorel
A glume pubescence (TO:0020036) trait which is the measurement of glume hairines density on outer side of sterile glume (PO:0009039).
PATO:0001019
plant_trait_ontology
TO:0020035
Refer to density (PATO:0001019): A physical quality which inheres in a bearer by virtue of some influence is exerted by the bearer's mass per unit size.
glume pubescence density
A glume pubescence (TO:0020036) trait which is the measurement of glume hairines density on outer side of sterile glume (PO:0009039).
Gramene:cwt
IWIS:1422
PO:0009039
TO:moorel
A glume morphology trait (TO:0000869) which is the extent of pubescence (presence of hairs) on the glume (PO:0009039) surface.
PATO:0001320
plant_trait_ontology
TO:0020036
Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down.
glume pubescence
A glume morphology trait (TO:0000869) which is the extent of pubescence (presence of hairs) on the glume (PO:0009039) surface.
Gramene:cwt
PO:0009039
TO:moorel
A glume pubescence (TO:0020036) which is the measurement of length of hairs on glume (PO:0009039).
PATO:0000122
plant_trait_ontology
TO:0020037
Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
glume pubescence length
A glume pubescence (TO:0020036) which is the measurement of length of hairs on glume (PO:0009039).
Gramene:cwt
IWIS:1423
PO:0009039
TO:moorel
A glume morphology trait (TO:0000869) which is the presence of wax on a glume (PO:0009039).
PATO:0002381
plant_trait_ontology
TO:0020038
Refer to waxiness (PATO:0002381): A composition quality inhering in an bearer by virtue of the presence of long chain aliphatic lipids on the surface of an organism.
glume waxiness
A glume morphology trait (TO:0000869) which is the presence of wax on a glume (PO:0009039).
Gramene:cwt
IWIS:1412
PO:0009039
TO:moorel
Causal agent: Rhynchosporium secalis.
jaiswalp
2011-08-19T12:12:24Z
scald (exact)
plant_trait_ontology
TO:0020051
Symptoms include, oval, water-soaked, blue-grey spots (1.0-1.5 cm long) developing into lesions with dry necrotic centers and dark brown margins. Lesions will coalesce under high infection levels and are not delimited by veins.
barley leaf scald disease resistance
Causal agent: Rhynchosporium secalis.
T-CAP:Victoria_Blake
A fungal disease resistance (TO:0000439) that is involved in the response to barley spot blotch disease. Causal agent: Cochliobolus sativus (Bipolaris sorokiniana).
jaiswalp
2011-08-19T12:19:00Z
spot blotch (exact)
plant_trait_ontology
TO:0020052
Symptoms include, uniform chocolate brown lesions that eventually merge forming irregular necrotic patches on leaves. Lesions may be surrounded by yellow zones of varying width.
barley spot blotch disease resistance
A fungal disease resistance (TO:0000439) that is involved in the response to barley spot blotch disease. Causal agent: Cochliobolus sativus (Bipolaris sorokiniana).
T-CAP:Victoria_Blake
A fungal disease resistance (TO:0000439) that is involved in the response to wheat spot blotch disease. Causal agent: Cochliobolus sativus (Bipolaris sorokiniana).
jaiswalp
2011-08-19T12:21:53Z
Helminthosporium leaf blotch (exact)
plant_trait_ontology
TO:0020053
Symptoms include, elongated to oval shaped dark brown lesions. Centers often lighten to dark brown or tan surrounded by an irregular dark brown ring.
wheat spot blotch disease resistance
A fungal disease resistance (TO:0000439) that is involved in the response to wheat spot blotch disease. Causal agent: Cochliobolus sativus (Bipolaris sorokiniana).
T-CAP:Victoria_Blake
Causal agent: Puccinia striiformis f. sp. hordei.
jaiswalp
2011-08-19T12:25:00Z
BSR (exact)
yellow rust (exact)
plant_trait_ontology
TO:0020054
Symptoms: chlorotic flecks at the infection site initially appear, followed by yellow uredinia (spore masses) in prominent stripes along the leaf veins. Black telia (overseasoning structures) readily develop from uredinia as infected plants mature.
barley stripe rust disease resistance
Causal agent: Puccinia striiformis f. sp. hordei.
T-CAP:Victoria_Blake
Causal agent: Puccinia striiformis f. sp. tritici.
jaiswalp
2011-08-19T12:27:45Z
yellow rust (broad)
plant_trait_ontology
TO:0020055
Symptoms: pustules (spore masses) containing yellow to orange-yellow urediniospores form narrow stripes on leaves, leaf sheaths and glumes.
wheat stripe rust disease resistance
Causal agent: Puccinia striiformis f. sp. tritici.
T-CAP:Victoria_Blake
Causal agent: Puccinia hordei.
jaiswalp
2011-08-19T12:29:57Z
brown rust (broad)
plant_trait_ontology
TO:0020056
Symptoms: small round orange brown pustules producing a mass of orange-brown urediniospores on the upper leaf surfaces and leaf sheaths.
barley leaf rust disease resistance
Causal agent: Puccinia hordei.
T-CAP:Victoria_Blake
Causal agent: Puccinia recondita f. sp. tritici.
jaiswalp
2011-08-19T12:31:09Z
brown rust (broad)
plant_trait_ontology
TO:0020057
Symptoms: circular to slightly elliptical pustules containing masses of orange to orange-brown urediniospores on the leaf surfaces and leaf sheaths.
wheat leaf rust disease resistance
Causal agent: Puccinia recondita f. sp. tritici.
T-CAP:Victoria_Blake
Causal agents: Cochliobolus sativus (Bipolaris sorokiniana), Fusarium culmorum and Fusarium pseudograminearum.
jaiswalp
2011-08-19T12:33:03Z
crown rot (broad)
plant_trait_ontology
TO:0020058
Symptoms: brown lesions on the roots, especially the subcrown internode. Under severe conditions, lesions can become nearly black with brown tissue extending into the crown and leaf sheaths. Stunted plants with reduced tillering and yield. Heads can be white with fewer kernels that are small and shriveled.
barley common root rot resistance
Causal agents: Cochliobolus sativus (Bipolaris sorokiniana), Fusarium culmorum and Fusarium pseudograminearum.
T-CAP:Victoria_Blake
Causal agents: Cochliobolus sativus (Bipolaris sorokiniana).
jaiswalp
2011-08-19T12:36:24Z
plant_trait_ontology
TO:0020059
Symptoms: browning of the root, crown and basal culm tissues. Plants may lodge. White spikes can appear.
wheat common root rot resistance
Causal agents: Cochliobolus sativus (Bipolaris sorokiniana).
T-CAP:Victoria_Blake
Causal agent: Blumeria graminis f. sp. hordei.
jaiswalp
2011-08-19T12:39:36Z
plant_trait_ontology
TO:0020060
Symptoms: first visible signs are fuzzy white to pale grey tufts of mycelia and conidia on the upper surfaces of leaves and leaf sheaths (especially on lower leaves) and sometimes on the spikes. Older fungal tissue is yellowish grey and can be easily rubbed off. Plant tissue becomes chlorotic or necrotic. Spherical black cleistothecia may develop.
barley powdery mildew disease resistance
Causal agent: Blumeria graminis f. sp. hordei.
T-CAP:Victoria_Blake
Causal agent: Blumeria graminis f. sp. tritici.
jaiswalp
2011-08-19T12:39:36Z
plant_trait_ontology
TO:0020061
Symptoms: first visible signs are fuzzy white to pale grey tufts of mycelia and conidia on the upper surfaces of leaves and leaf sheaths (especially on lower leaves) and sometimes on the spikes. Older fungal tissue is yellowish grey and can be easily rubbed off. Plant tissue becomes chlorotic or necrotic. Spherical black cleistothecia may develop.
wheat powdery mildew disease resistance
Causal agent: Blumeria graminis f. sp. tritici.
T-CAP:Victoria_Blake
Causal agent: Pyrenophora teres f. teres.
jaiswalp
2011-08-19T12:39:36Z
NFNB (exact)
plant_trait_ontology
TO:0020062
Symptoms: in adult plants, initial symptoms are small pinpoint to elliptical brown spots which expand to form narrow, tan to light brown lesions, often delimited by leaf veins. Within lesions, dark brown longitudinal and transverse striations appear forming a net-like pattern. In seedlings, greenish grey, water-soaked areas appear forming brown lesions with netted striations.
barley net form net blotch disease resistance
Causal agent: Pyrenophora teres f. teres.
T-CAP:Victoria_Blake
Causal agent: Pyrenophora teres f. maculata.
jaiswalp
2011-08-19T12:39:36Z
SFNB (exact)
plant_trait_ontology
TO:0020063
Symptoms: dark brown, circular to elliptical lesions surrounded by bands of chlorosis.
barley spot form net blotch disease resistance
Causal agent: Pyrenophora teres f. maculata.
T-CAP:Victoria_Blake
Causal agent: Septoria passerinii and Stagonospora avenae f. sp. triticeae (teleomorph: Phaeosphaeria avenaria f. sp. triticeae).
jaiswalp
2011-08-19T12:39:36Z
SSLB (exact)
plant_trait_ontology
TO:0020064
Symptoms: in seedlings, S. passerinii causes faint, yellowish areas that turn greenish gray then straw colored with time forming a distinct demarcation next to healthy green tissue. On adult plants S. passerinii infection produces long, rectangular lesions delimited by veins that first appear graying then turn tan or straw colored. S. avenae f. sp. triticea produces yellow brown lesions that traverse veins and are shield or lens shaped.
barley septoria disease resistance
Causal agent: Septoria passerinii and Stagonospora avenae f. sp. triticeae (teleomorph: Phaeosphaeria avenaria f. sp. triticeae).
T-CAP:Victoria_Blake
Causal agent: Septoria tritici (Mycosphaerella graminicola), Septoria nodorum (Leptosphaeria nodorum), Septoria avenae f. sp. triticeae (Leptosphaeria avenaria f. sp. triticeae).
jaiswalp
2011-08-19T12:39:36Z
plant_trait_ontology
TO:0020065
Symptoms: Initial infection sites tend to be irregular in shape, oval to elongated chlorotic spots or lesions. As these sites expand, the centers of the lesions become pale, straw colored, and slightly necrotic, often with numerous small black dots (pycnidia). The lesions of septoria tritici blotch tend to be linear and restricted laterally, while those of septoria nodorum blotch and septoria avenae blotch are more lens shaped. All above ground plant parts can be affected.
wheat septoria leaf blotch disease resistance
Causal agent: Septoria tritici (Mycosphaerella graminicola), Septoria nodorum (Leptosphaeria nodorum), Septoria avenae f. sp. triticeae (Leptosphaeria avenaria f. sp. triticeae).
T-CAP:Victoria_Blake
Causal agent: Xanthomonas translucens pv. translucens and pv. undulosa.
jaiswalp
2011-08-19T12:58:34Z
plant_trait_ontology
TO:0020066
Symptoms: small, light to pale green spots which later expand into linear streaks. Streaks can extend the entire length of the leaf, that will become translucent. Infected leaves will turn yellow then brown as it dies.
barley leaf streak resistance
Causal agent: Xanthomonas translucens pv. translucens and pv. undulosa.
T-CAP:Victoria_Blake
Causal agent: The Barley Yellow Dwarf Viruses, Luteovirus (Group IV (+)ssRNA).
jaiswalp
2011-08-19T01:00:45Z
BYDV (exact)
plant_trait_ontology
TO:0020067
Symptoms: uneven blotches of bright yellow discoloration on the tips and margins of older leaves, eventually progressing down toward the base, covering the entire leaf within a few weeks. Reduced internode elongation causes stunting with severe infection possibly.
barley yellow dwarf virus disease resistance
Causal agent: The Barley Yellow Dwarf Viruses, Luteovirus (Group IV (+)ssRNA).
T-CAP:Victoria_Blake
Amount of beta-glucan present in the plant part or product (e.g. malt). Beta-Glucans are polysaccharides of D-glucose linked by beta-glycosidic bonds that vary by molecular mass, solubility, viscosity and 3D configuration.
jaiswalp
2011-08-19T01:03:01Z
plant_trait_ontology
TO:0020068
beta-glucan content
Amount of beta-glucan present in the plant part or product (e.g. malt). Beta-Glucans are polysaccharides of D-glucose linked by beta-glycosidic bonds that vary by molecular mass, solubility, viscosity and 3D configuration.
T-CAP:Victoria_Blake
An inflorescence exsertion (TO:0001002) trait measured in distance from the base of the spike (PO:0030117) to the auricle (PO:0020106) of the flag leaf (PO:0020103).
jaiswalp
2011-08-19T01:07:39Z
plant_trait_ontology
TO:0020069
spike exsertion
An inflorescence exsertion (TO:0001002) trait measured in distance from the base of the spike (PO:0030117) to the auricle (PO:0020106) of the flag leaf (PO:0020103).
T-CAP:Victoria_Blake
TO:cooperl
Activity of beta-glucanase ((1,3-1,4)-beta-D-glucan, 4-glucanohydrolase), (EC:3.2.1.73) in the hydrolysis of beta-glucans.
jaiswalp
2011-08-19T01:10:26Z
plant_trait_ontology
TO:0020070
beta-glucanase activity trait
Activity of beta-glucanase ((1,3-1,4)-beta-D-glucan, 4-glucanohydrolase), (EC:3.2.1.73) in the hydrolysis of beta-glucans.
GO:0042972
GO:0052736
T-CAP:Victoria_Blake
The ability of beta-glucanase to remain active under mashing (boiling grain in water) conditions during beer making.
jaiswalp
2011-08-19T01:18:25Z
plant_trait_ontology
TO:0020071
Beta-glucanase [(1-3,1-4)-beta-D-glucan, 4-glucanohydrolase], (E.C:3.2.1.73).
beta-glucanase thermostability
The ability of beta-glucanase to remain active under mashing (boiling grain in water) conditions during beer making.
T-CAP:Victoria_Blake
Activity of beta-glucanase in the barley wort (the boiled grain and water) during the beer making process.
jaiswalp
2011-08-19T01:20:23Z
residual beta-glucanase (broad)
plant_trait_ontology
TO:0020072
Beta-glucanase [(1-3,1-4)-beta-D-glucan, 4-glucanohydrolase], (E.C:3.2.1.73).
residual beta-glucanase activity trait
Activity of beta-glucanase in the barley wort (the boiled grain and water) during the beer making process.
T-CAP:Victoria_Blake
Concentration of protein in the wort after boiling the grain with water (mashing) in the beer making process.
jaiswalp
2011-08-19T01:24:05Z
wort protein (broad)
plant_trait_ontology
TO:0020073
barley wort protein concentration
Concentration of protein in the wort after boiling the grain with water (mashing) in the beer making process.
T-CAP:Victoria_Blake
Color of the solution derived from boiling barley grain with water during the beer making process.
jaiswalp
2011-08-19T01:27:42Z
plant_trait_ontology
TO:0020074
barley wort color
Color of the solution derived from boiling barley grain with water during the beer making process.
T-CAP:Victoria_Blake
Percent protein in the malt prior to mashing (boiling the grain with water to produce a wort) in the beer making process.
jaiswalp
2011-08-19T01:29:00Z
plant_trait_ontology
TO:0020075
barley malt protein
Percent protein in the malt prior to mashing (boiling the grain with water to produce a wort) in the beer making process.
T-CAP:Victoria_Blake
Amount of phenolics present in the plant part, whole plant or product.
jaiswalp
2011-08-19T01:29:58Z
plant_trait_ontology
TO:0020076
In barley its evaluated in ex malt.
phenolic compound content
Amount of phenolics present in the plant part, whole plant or product.
T-CAP:Victoria_Blake
A shoot system yield trait (TO:0000327) which is a measure of the number of fertile spikes (PO:0030117) dropped before harvest.
jaiswalp
2011-08-19T01:33:35Z
spike drop (exact)
spike inflorescence deop (exact)
plant_trait_ontology
TO:0020077
head drop
A shoot system yield trait (TO:0000327) which is a measure of the number of fertile spikes (PO:0030117) dropped before harvest.
T-CAP:Victoria_Blake
TO:cooperl
A xanthophyll content (TO:0000301) which is the amount of zeaxanthin (CHEBI:27547) in a plant structure (PO:0009011).
jaiswalp
2011-08-19T02:49:07Z
CHEBI:27547
plant_trait_ontology
TO:0020078
zeaxanthin content
A xanthophyll content (TO:0000301) which is the amount of beta-cryptoxanthin (CHEBI:10362) in a plant structure (PO:0009011).
jaiswalp
2011-08-19T02:53:13Z
CHEBI:10362
plant_trait_ontology
TO:0020079
beta-cryptoxanthin content
This trait determines the amount of organic matter from the stover that would eventually be digested by animals. Value derived from chemical and in vitro analysis with rumen microbial inoculum of dried and ground stover, usually using Near Infrared Reflectance Spectrophotometry (NIRS) after appropriate calibration.
jaiswalp
2011-08-19T03:13:08Z
stover related trait (broad)
in vitro organic matter digestibility (exact)
plant_trait_ontology
TO:0020080
Measured as percentage.
stover organic matter digestibility
This trait determines the amount of organic matter from the stover that would eventually be digested by animals. Value derived from chemical and in vitro analysis with rumen microbial inoculum of dried and ground stover, usually using Near Infrared Reflectance Spectrophotometry (NIRS) after appropriate calibration.
GCP:GCP_324.0000031
ICRISAT:Vincent_Vadez
ILRI:Michael_Blummel
stover related trait (broad)
GCP:GCP_324.000003
The trait takes into account energy losses occurring in the animal in faeces, urine and CH4 and estimates how much energy (in calories or joules) a given unit of ground stover is actually available for meat and milk production . Value derived from chemical and in vitro analysis of dried and ground stover.
jaiswalp
2011-08-19T03:17:28Z
stover related traits (broad)
metabolised energy (exact)
plant_trait_ontology
TO:0020081
Units: Kcal/kg.
metabolized energy of stover
The trait takes into account energy losses occurring in the animal in faeces, urine and CH4 and estimates how much energy (in calories or joules) a given unit of ground stover is actually available for meat and milk production . Value derived from chemical and in vitro analysis of dried and ground stover.
GCP:GCP_324.0000036
ICRISAT:Vincent_Vadez
ILRI:Michael_Blummel
stover related traits (broad)
GCP:GCP_324.000003
A trait to measure percent nitrogen concentration in the stover sample used for predicting crude protein (CP) content of stover by multiplication with a factor of 6.25 (CP = N x 6.25). This concentration is one of the criteria to assess the quality of fodder. Value derived from the analysis of stover using Near Infrared Reflectance Spectrophotometry (NIRS).
jaiswalp
2011-08-19T03:20:23Z
stover related traits
plant_trait_ontology
TO:0020082
stover nitrogen content
A trait to measure percent nitrogen concentration in the stover sample used for predicting crude protein (CP) content of stover by multiplication with a factor of 6.25 (CP = N x 6.25). This concentration is one of the criteria to assess the quality of fodder. Value derived from the analysis of stover using Near Infrared Reflectance Spectrophotometry (NIRS).
GCP:GCP_324.0000016
ICRISAT:Vincent_Vadez
ILRI:Michael_Blummel
stover related traits
GCP:GCP_324.000003
A stem morphology trait (TO:0000361) which is the diameter of a stem (PO:0009047).
jaiswalp
2011-08-19T03:31:47Z
PATO:0001334
plant_trait_ontology
culm diameter (related)
TO:0020083
Refer to diameter (PATO:0001334): A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary.
stem diameter
A stem morphology trait (TO:0000361) which is the diameter of a stem (PO:0009047).
Gramene:pankaj_jaiswal
PO:0009047
TO:moorel
A trait to measure leaf spiralling.
jaiswalp
2011-08-19T03:33:01Z
plant_trait_ontology
TO:0020084
spiral leaf
A trait to measure leaf spiralling.
Gramene:pankaj_jaiswal
A shoot development trait (TO:0000654) to measure the senescence of a stem (PO:0009047).
jaiswalp
2011-08-19T03:34:31Z
GO:0010260
TO_GIT:99
culm senescence (exact)
plant_trait_ontology
TO:0020085
Refer to organ senescence (GO:0010260): The process that occurs in an organ near the end of its active life that is associated with the dismantling of cell components and membranes, and an overall decline in metabolism. An example of this process is found in Arabidopsis thaliana.
stem senescence
A shoot development trait (TO:0000654) to measure the senescence of a stem (PO:0009047).
Gramene:pankaj_jaiswal
PO:0009047
TO:moorel
A trait to observe neck leaf presence.
jaiswalp
2011-08-19T03:35:46Z
plant_trait_ontology
TO:0020086
neck leaf presence
A trait to observe neck leaf presence.
Gramene:pankaj_jaiswal
A trait measuring the extent of physical cracking of a root caused by genetic, environmental factors or by post-harvest storage and handling of the root or root part.
jaiswalp
2011-08-19T03:44:21Z
plant_trait_ontology
TO:0020087
root cracking
A trait measuring the extent of physical cracking of a root caused by genetic, environmental factors or by post-harvest storage and handling of the root or root part.
Gramene:pankaj_jaiswal
A metabolite content trait (TO:0000281) which is the concentration of water soluble components in a plant structure (PO:0009011).
jaiswalp
2011-08-19T03:47:00Z
TO:0002711
TO_GIT:100
plant_trait_ontology
total dissolved solids content (related)
TO:0020088
This trait is usually highly correlated with total soluble sugar content (TO:0000340). Often determined in fresh tissue using a refractive index.
total water soluble content
A metabolite content trait (TO:0000281) which is the concentration of water soluble components in a plant structure (PO:0009011).
Gramene:pankaj_jaiswal
TO:cooperl
A mineral and ion content trait (TO:0000465) which is the iron cation (CHEBI:24875) composition in a plant structure (PO:0009011).
jaiswalp
2011-08-19T04:02:53Z
CHEBI:24873
plant_trait_ontology
TO:0020089
iron content trait
A mineral and ion content trait (TO:0000465) which is the amount of zinc (CHEBI:63056) in a plant structure (PO:0009011).
jaiswalp
2011-08-19T04:02:53Z
plant_trait_ontology
TO:0020090
zinc content trait
A mineral and ion content trait (TO:0000465) which is the amount of zinc (CHEBI:63056) in a plant structure (PO:0009011).
CHEBI:63056
A mineral and ion content trait (TO:0000465) which is the amount of manganese (CHEBI:25154) in a plant structure (PO:0009011).
jaiswalp
2011-08-19T04:02:53Z
CHEBI:25154
plant_trait_ontology
TO:0020091
manganese content
A mineral and ion content trait (TO:0000465) which is the copper cation (CHEBI:23378) composition in a plant structure (PO:0009011).
jaiswalp
2011-08-19T04:02:53Z
CHEBI:23377
Cu content (exact)
plant_trait_ontology
TO:0020092
copper content trait
A mineral and ion content trait (TO:0000465) which is the copper cation (CHEBI:23378) composition in a plant structure (PO:0009011).
TO:cooperl
A mineral and ion content trait (TO:0000465) which is the amount of nitrogen (CHEBI:51143) in a plant structure (PO:0009011).
jaiswalp
2011-08-19T04:02:53Z
CHEBI:51143
plant_trait_ontology
TO:0020093
nitrogen content
A mineral and ion content trait (TO:0000465) which is the amount of nitrate (CHEBI:17632) in a plant structure (PO:0009011).
jaiswalp
2011-08-19T04:02:53Z
CHEBI:17632
plant_trait_ontology
TO:0020094
nitrate content
Trait associated with any of the stomatal opening, closure, conductance, resistance process.
jaiswalp
2011-08-19T04:06:44Z
plant_trait_ontology
TO:0020095
stomatal process related trait
Trait associated with any of the stomatal opening, closure, conductance, resistance process.
TO:contributors
Trait associated with directed movement of minerals and ions into, out of, within or between cells.
jaiswalp
2011-08-19T04:08:23Z
plant_trait_ontology
TO:0020096
mineral and ion transport trait
Trait associated with directed movement of minerals and ions into, out of, within or between cells.
TO:contributors
A trait to measure the physiological parameters involved in the process of opening of stomatal pores.
jaiswalp
2011-08-19T04:09:49Z
plant_trait_ontology
TO:0020097
stomatal opening
A trait to measure the physiological parameters involved in the process of opening of stomatal pores.
Gramene:pankaj_jaiswal
TO:contributors
The sensitivity to the nitrate content in the growth medium.
jaiswalp
2011-08-19T04:11:32Z
plant_trait_ontology
TO:0020098
nitrate sensitivity
The sensitivity to the nitrate content in the growth medium.
Gramene:pankaj_jaiswal
TO:contributors
Trait associated with directed movement of nitrate into, out of, within or between cells.
jaiswalp
2011-08-19T04:13:47Z
plant_trait_ontology
TO:0020099
nitrate transport
Trait associated with directed movement of nitrate into, out of, within or between cells.
TO:contributors
The total nitrate ion uptake measured in a plant or a plant part.
jaiswalp
2011-08-19T04:13:47Z
plant_trait_ontology
TO:0020100
nitrate uptake
The total nitrate ion uptake measured in a plant or a plant part.
TO:contributors
Trait associated with directed movement of starch.
jaiswalp
2011-08-19T04:13:47Z
plant_trait_ontology
TO:0020101
starch mobilization
Trait associated with directed movement of starch.
TO:contributors
A mineral and ion content trait (TO:0000465) which is the amount of phosphate (CHEBI:26020) in a plant structure (PO:0009011).
jaiswalp
2011-08-19T04:16:58Z
CHEBI:26020
phosphate ion content (exact)
plant_trait_ontology
TO:0020102
phosphate content
A mineral and ion content trait (TO:0000465) which is the amount of phosphate (CHEBI:26020) in a plant structure (PO:0009011).
CHEBI:26020
A root length (TO:0000227) trait which is the length of an adventitious root (shoot-borne root; PO:0000042).
jaiswalp
2011-08-19T04:18:45Z
plant_trait_ontology
TO:0020103
An adventitious root can be a 'shoot-borne root' (PO:0000042) or one of the child terms- all have adventitious root as a broad synonym. Shoot-borne roots are part of the root system (PO:0025025).
adventitious root length
A root length (TO:0000227) trait which is the length of an adventitious root (shoot-borne root; PO:0000042).
TO:cooperl
Absence of adventitious roots in the plant.
jaiswalp
2011-08-19T04:19:49Z
plant_trait_ontology
TO:0020104
adventitious rootless
Absence of adventitious roots in the plant.
TO:contributors
A trait to measure the CW type of ytoplasmic male sterility in plants.
jaiswalp
2011-08-19T04:21:39Z
plant_trait_ontology
TO:0020105
Often measured by abnormal pollen germination.
CW-cytoplasmic male sterility
A trait to measure the CW type of ytoplasmic male sterility in plants.
TO:contributors
An auxin content (TO:0002672) which is the amount of indole-3-acetic acid (CHEBI:16411) in a plant structure (PO:0009011).
jaiswalp
2011-08-19T04:24:06Z
CHEBI:16411
IAA content (exact)
Indole-3-acetic acid (IAA) content (exact)
plant_trait_ontology
TO:0020106
Indole-3-acetic acid content
A plant cell morphology trait (TO:0002683) which is the length of a plant cell (PO:0009002).
jaiswalp
2011-08-19T04:25:39Z
PATO:0000122
plant_trait_ontology
TO:0020107
Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points.
plant cell length
A plant cell morphology trait (TO:0002683) which is the length of a plant cell (PO:0009002).
Gramene:pankaj_jaiswal
PO:0009002
TO:moorel
The length of the root cortical cell.
jaiswalp
2011-08-19T04:26:36Z
plant_trait_ontology
TO:0020108
root cortical cell length
The length of the root cortical cell.
Gramene:pankaj_jaiswal
TO:cooperl
Traits associated with observing effects on the development of vascular bundle.
jaiswalp
2011-08-19T04:27:34Z
plant_trait_ontology
TO:0020109
vascular bundle development trait
Traits associated with observing effects on the development of vascular bundle.
TO:contributors
Traits associated with observing effects on the development of the gynoecium.
jaiswalp
2011-08-19T04:29:46Z
plant_trait_ontology
TO:0020110
gynoecium development trait
Traits associated with observing effects on the development of the gynoecium.
TO:contributors
Traits associated with observing effects on the development of the ovary.
jaiswalp
2011-08-19T04:30:47Z
plant_trait_ontology
TO:0020111
ovary development trait
Traits associated with observing effects on the development of the ovary.
TO:contributors
Accumulation of phosphate level in a plant or a plant part at toxic level.
jaiswalp
2011-08-19T04:31:40Z
plant_trait_ontology
TO:0020112
phosphorus toxicity
Accumulation of phosphate level in a plant or a plant part at toxic level.
TO:contributors
true
A phosphorus content trait (TO:0001024) which is the phosphorus cation (CHEBI:33467) composition in a shoot system (PO:0009006).
jaiswalp
2011-08-19T04:35:33Z
plant_trait_ontology
TO:0020114
shoot system phosphorus content
A phosphorus content trait (TO:0001024) which is the phosphorus cation (CHEBI:33467) composition in a shoot system (PO:0009006).
TO:contributors
https://search.proquest.com/docview/1426182399
The process to maintain the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules.
jaiswalp
2011-08-19T04:36:34Z
plant_trait_ontology
TO:0020115
chlorophyll fluorescence quenching
The process to maintain the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules.
TO:contributors
The process to maintain the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules under light conditions.
jaiswalp
2011-08-19T04:37:43Z
plant_trait_ontology
TO:0020116
photochemical quenching
The process to maintain the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules under light conditions.
Gramene:pankaj_jaiswal
TO:contributors
The process to maintain the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules under no light conditions.
jaiswalp
2011-08-19T04:37:43Z
plant_trait_ontology
NPQ (related)
TO:0020117
non photochemical quenching
The process to maintain the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules under no light conditions.
Gramene:pankaj_jaiswal
TO:contributors
A xanthophyll content (TO:0000301) which is the amount of neoxanthin (CHEBI:25501) in a plant structure (PO:0009011).
jaiswalp
2011-08-19T04:39:32Z
CHEBI:25501
plant_trait_ontology
TO:0020118
neoxanthin content
A xanthophyll content (TO:0000301) which is the amount of violaxanthin (CHEBI:27295) in a plant structure (PO:0009011).
jaiswalp
2011-08-19T04:40:04Z
CHEBI:27295
plant_trait_ontology
TO:0020119
violaxanthin content
An inflorescence bract morphology trait (TO:0000819) which is the presence of spines on an involucral bract (PO:0009045).
jaiswalp
2011-08-19T04:50:17Z
TO_GIT:110
spines on involucral bracts (exact)
plant_trait_ontology
TO:0020120
involucral bract spine presence
An inflorescence bract morphology trait (TO:0000819) which is the presence of spines on an involucral bract (PO:0009045).
Gramene:pankaj_jaiswal
TO:cooperl
An assay to determine the resistance exhibited by a plant or a group of plants (population) in response to arachnids as compared to the susceptible and/or the reference plants of the same species.
jaiswalp
2011-08-19T04:55:55Z
plant_trait_ontology
TO:0020121
arachnid damage resistance
An assay to determine the resistance exhibited by a plant or a group of plants (population) in response to arachnids as compared to the susceptible and/or the reference plants of the same species.
Gramene:pankaj_jaiswal
Causal agent: Tetranychus urticae.
jaiswalp
2011-08-19T04:56:56Z
red spider mite resistance (exact)
plant_trait_ontology
TO:0020122
two-spotted spider mite resistance
Causal agent: Tetranychus urticae.
Gramene:pankaj_jaiswal
TO:contributors
A trait to measure the ethanol yield from the industrial processing of feedstock (biomass).
jaiswalp
2011-08-19T05:09:40Z
plant_trait_ontology
TO:0020123
Often measured as volume/mass unit used by DOE-USA. It's also consistent with the common measure of fuel ethanol (volume, not mass) and common measure of biomass. Please note that ethanol yield in liters per megagram would depend on both the ethanol conversion process and the composition (not just the quantity) of the biomass. And in most cases (at least for breeding), it probably would be predicted ethanol yield instead of ethanol yield that is directly measured from a pretreatment and fermentation process.
ethanol yield from biomass
A trait to measure the ethanol yield from the industrial processing of feedstock (biomass).
Gramene:pankaj_jaiswal
TO:contributors
A stem internode morphology trait (TO:0000756) where the stem internode (PO:0020142) is bent.
cooperl
2015-11-24T22:16:25Z
plant_trait_ontology
TO:1000000
Refers to bent (PATO:0000617): a shape quality inhering in a bearer by virtue of the bearer's having one or more angle(s) in its length.
stem internode bent
A stem internode morphology trait (TO:0000756) where the stem internode (PO:0020142) is bent.
TO:cooperl
OBSOLETE. A trait which is associated with the size of a cotyledon.
cjmungall
2015-11-30T17:23:54Z
seed leaf size (exact)
plant_trait_ontology
TO:1000001
This term was obsoleted at the TermGenie Gatekeeper stage.
OBSOLETE cotyledon size
true
OBSOLETE. A trait which is associated with the size of a cotyledon.
TO:TermGenie
seed leaf size (exact)
TO:TermGenie
A trait which is associated with the volumetric density of a secondary xylem.
cjmungall
2015-11-30T17:23:56Z
wood volumetric density (exact)
plant_trait_ontology
TO:1000002
secondary xylem volumetric density
true
true
true
A trait which is associated with the volumetric density of a secondary xylem.
TO:TermGenie
wood volumetric density (exact)
TO:TermGenie
A trait which is associated with the color of a shoot axis node.
cjmungall
2015-11-30T17:23:58Z
shoot axis node colour (exact)
shoot axis node relative color (exact)
plant_trait_ontology
TO:1000003
shoot axis node color
true
true
true
A trait which is associated with the color of a shoot axis node.
TO:TermGenie
shoot axis node colour (exact)
TO:TermGenie
shoot axis node relative color (exact)
TO:TermGenie
An infructescence morphology trait (TO:0000920) which is the position of an infructescence (PO:0006342).
cooperl
2015-12-10T00:13:35Z
plant_trait_ontology
TO:1000004
infructescence position
An infructescence morphology trait (TO:0000920) which is the position of an infructescence (PO:0006342).
TO:cooperl
A tuberous root tuber morphology trait (TO:1000007) which is the diameter of a tuberous root tuber (PO:0025476).
marieangelique.laporte
2015-12-11T15:55:08Z
storage root diameter (exact)
plant_trait_ontology
root tuber diameter (related)
TO:1000006
tuberous root tuber diameter
A tuberous root tuber morphology trait (TO:1000007) which is the diameter of a tuberous root tuber (PO:0025476).
TO:TermGenie
storage root diameter (exact)
TO:TermGenie
root tuber diameter (related)
TO:TermGenie
A tuber morphology trait (TO:0000741) which is the quality of a tuberous root tuber (PO:0025476).
marieangelique.laporte
2015-12-11T16:05:03Z
plant_trait_ontology
TO:1000007
tuberous root tuber morphology trait
A tuber morphology trait (TO:0000741) which is the quality of a tuberous root tuber (PO:0025476).
TO:malaporte
A branch morphology trait (TO:0000740) which is the position of a branch (PO:0025073).
marieangelique.laporte
2015-12-16T09:38:12Z
shoot axis branch position (exact)
plant_trait_ontology
TO:1000008
branch position
true
true
true
A branch morphology trait (TO:0000740) which is the position of a branch (PO:0025073).
TO:TermGenie
shoot axis branch position (exact)
TO:TermGenie
A branch morphology trait (TO:0000740) which is the angle of a branch (PO:0025073).
marieangelique.laporte
2015-12-16T14:12:59Z
branching angle (exact)
shoot axis branch angle (exact)
plant_trait_ontology
TO:1000009
branch angle
true
A branch morphology trait (TO:0000740) which is the angle of a branch (PO:0025073).
TO:TermGenie
shoot axis branch angle (exact)
TO:TermGenie
A cardinal part of a multi-tissue plant structure morphology trait (TO:0000837) which is the color of a caruncle (PO:0020060).
marieangelique.laporte
2015-12-16T14:18:40Z
caruncle colour (exact)
plant_trait_ontology
TO:1000010
caruncle color
true
true
true
A cardinal part of a multi-tissue plant structure morphology trait (TO:0000837) which is the color of a caruncle (PO:0020060).
PO:0020060
TO:TermGenie
caruncle colour (exact)
TO:TermGenie
A fruit morphology trait (TO:0002629) which is the position of a fruit (PO:0009001).
cooperl
2015-12-30T18:26:07Z
fruit location (exact)
fruit placement (exact)
accessory fruit position (narrow)
achene position (narrow)
acorn position (narrow)
aggregate fruit position (narrow)
akene position (narrow)
anthocarp position (narrow)
berry position (narrow)
capsule position (narrow)
caryopsides position (narrow)
caryopsis position (narrow)
circumcissile capsule position (narrow)
citrus fruit position (narrow)
coenocarp position (narrow)
cypsela position (narrow)
diclesium position (narrow)
diplotegia position (narrow)
diplotegium position (narrow)
drupe position (narrow)
folliceta position (narrow)
follicetum position (narrow)
glandes position (narrow)
glans position (narrow)
grain position (narrow)
hesperidia position (narrow)
hesperidium position (narrow)
hip position (narrow)
kernel position (narrow)
legume position (narrow)
loculicidal capsule position (narrow)
loment position (narrow)
lomentum position (narrow)
multiple fruit position (narrow)
nut position (narrow)
nutlet position (narrow)
pepo position (narrow)
pod position (narrow)
pome position (narrow)
poricidal capsule position (narrow)
pyxides location (narrow)
pyxides position (narrow)
pyxis position (narrow)
samara position (narrow)
schizocarp location (narrow)
schizocarp position (narrow)
septicidal capsule position (narrow)
silicle location (narrow)
silicle position (narrow)
silicula position (narrow)
silicula relational spatial quality (narrow)
siliqua position (narrow)
silique position (narrow)
stone fruit position (narrow)
syconia position (narrow)
syconium position (narrow)
syncarp position (narrow)
utricle location (narrow)
utricle position (narrow)
plant_trait_ontology
TO:1000011
fruit position
true
true
true
A fruit morphology trait (TO:0002629) which is the position of a fruit (PO:0009001).
TO:cooperl
fruit location (exact)
TO:TermGenie
fruit placement (exact)
TO:TermGenie
accessory fruit position (narrow)
TO:TermGenie
achene position (narrow)
TO:TermGenie
acorn position (narrow)
TO:TermGenie
aggregate fruit position (narrow)
TO:TermGenie
akene position (narrow)
TO:TermGenie
anthocarp position (narrow)
TO:TermGenie
berry position (narrow)
TO:TermGenie
capsule position (narrow)
TO:TermGenie
caryopsides position (narrow)
TO:TermGenie
caryopsis position (narrow)
TO:TermGenie
circumcissile capsule position (narrow)
TO:TermGenie
citrus fruit position (narrow)
TO:TermGenie
coenocarp position (narrow)
TO:TermGenie
cypsela position (narrow)
TO:TermGenie
diclesium position (narrow)
TO:TermGenie
diplotegia position (narrow)
TO:TermGenie
diplotegium position (narrow)
TO:TermGenie
drupe position (narrow)
TO:TermGenie
folliceta position (narrow)
TO:TermGenie
follicetum position (narrow)
TO:TermGenie
glandes position (narrow)
TO:TermGenie
glans position (narrow)
TO:TermGenie
grain position (narrow)
TO:TermGenie
hesperidia position (narrow)
TO:TermGenie
hesperidium position (narrow)
TO:TermGenie
hip position (narrow)
TO:TermGenie
kernel position (narrow)
TO:TermGenie
legume position (narrow)
TO:TermGenie
loculicidal capsule position (narrow)
TO:TermGenie
loment position (narrow)
TO:TermGenie
lomentum position (narrow)
TO:TermGenie
multiple fruit position (narrow)
TO:TermGenie
nut position (narrow)
TO:TermGenie
nutlet position (narrow)
TO:TermGenie
pepo position (narrow)
TO:TermGenie
pod position (narrow)
TO:TermGenie
pome position (narrow)
TO:TermGenie
poricidal capsule position (narrow)
TO:TermGenie
pyxides location (narrow)
TO:TermGenie
pyxides position (narrow)
TO:TermGenie
pyxis position (narrow)
TO:TermGenie
samara position (narrow)
TO:TermGenie
schizocarp location (narrow)
TO:TermGenie
schizocarp position (narrow)
TO:TermGenie
septicidal capsule position (narrow)
TO:TermGenie
silicle location (narrow)
TO:TermGenie
silicle position (narrow)
TO:TermGenie
silicula position (narrow)
TO:TermGenie
silicula relational spatial quality (narrow)
TO:TermGenie
siliqua position (narrow)
TO:TermGenie
silique position (narrow)
TO:TermGenie
stone fruit position (narrow)
TO:TermGenie
syconia position (narrow)
TO:TermGenie
syconium position (narrow)
TO:TermGenie
syncarp position (narrow)
TO:TermGenie
utricle location (narrow)
TO:TermGenie
utricle position (narrow)
TO:TermGenie
A whole plant morphology trait (TO:0000398) which is the size of a whole plant (PO:0000003).
cooperl
2015-12-30T19:41:19Z
planta entera (Spanish) size (exact)
bush size (narrow)
frutex size (narrow)
frutices size (narrow)
gametophyte size (narrow)
herb size (narrow)
liana size (narrow)
prothalli size (narrow)
prothallium size (narrow)
prothallus size (narrow)
seedling size (narrow)
shrub size (narrow)
sporophyte size (narrow)
suffrutex size (narrow)
suffrutices size (narrow)
tree size (narrow)
vine size (narrow)
woody clump size (narrow)
plant_trait_ontology
clonal colony size (related)
colony size (related)
TO:1000012
whole plant size
true
true
true
A whole plant morphology trait (TO:0000398) which is the size of a whole plant (PO:0000003).
TO:cooperl
planta entera (Spanish) size (exact)
TO:TermGenie
bush size (narrow)
TO:TermGenie
frutex size (narrow)
TO:TermGenie
frutices size (narrow)
TO:TermGenie
gametophyte size (narrow)
TO:TermGenie
herb size (narrow)
TO:TermGenie
liana size (narrow)
TO:TermGenie
prothalli size (narrow)
TO:TermGenie
prothallium size (narrow)
TO:TermGenie
prothallus size (narrow)
TO:TermGenie
seedling size (narrow)
TO:TermGenie
shrub size (narrow)
TO:TermGenie
sporophyte size (narrow)
TO:TermGenie
suffrutex size (narrow)
TO:TermGenie
suffrutices size (narrow)
TO:TermGenie
tree size (narrow)
TO:TermGenie
vine size (narrow)
TO:TermGenie
woody clump size (narrow)
TO:TermGenie
clonal colony size (related)
TO:TermGenie
colony size (related)
TO:TermGenie
A cardinal organ part morphology trait (TO:0000754) which is a quality of a leaf lamina lobe (PO:0025517).
marieangelique.laporte
2016-01-05T10:49:33Z
leaf lobe morphology trait (exact)
plant_trait_ontology
TO:1000013
leaf lamina lobe morphology trait
true
true
A cardinal organ part morphology trait (TO:0000754) which is a quality of a leaf lamina lobe (PO:0025517).
TO:TermGenie
A leaf lamina lobe morphology trait (TO:1000013) which is the length of a leaf lamina lobe (PO:0025517).
marieangelique.laporte
2016-01-05T11:01:12Z
leaf lobe length (exact)
plant_trait_ontology
TO:1000014
leaf lamina lobe length
true
A leaf lamina lobe morphology trait (TO:1000013) which is the length of a leaf lamina lobe (PO:0025517).
TO:TermGenie
A leaf lamina lobe morphology trait (TO:1000013) which is the width of a leaf lamina lobe (PO:0025517).
marieangelique.laporte
2016-01-05T11:04:25Z
plant_trait_ontology
leaf lobe width (related)
TO:1000015
leaf lamina lobe width
true
A leaf lamina lobe morphology trait (TO:1000013) which is the width of a leaf lamina lobe (PO:0025517).
TO:TermGenie
A plant ovary morphology (TO:10000021) which is the color of a plant ovary (PO:0009072).
marieangelique.laporte
2016-01-05T10:36:57Z
plant ovary colour (exact)
plant ovary relative color (narrow)
plant_trait_ontology
TO:1000016
plant ovary color
A plant ovary morphology (TO:10000021) which is the color of a plant ovary (PO:0009072).
TO:TermGenie
A portion of plant tissue morphology trait (TO:0000843) which is the color of a stem cortex (PO:0025612).
marieangelique.laporte
2016-01-05T14:08:59Z
stem cortex colour (exact)
stem cortex relative color (exact)
plant_trait_ontology
TO:1000017
stem cortex color
true
true
true
A portion of plant tissue morphology trait (TO:0000843) which is the color of a stem cortex (PO:0025612).
TO:TermGenie
stem cortex colour (exact)
TO:TermGenie
stem cortex relative color (exact)
TO:TermGenie
A portion of plant tissue morphology trait (TO:0000843) which is the color of a stem epidermis (PO:0025178).
marieangelique.laporte
2016-01-05T14:11:24Z
stem epidermis colour (exact)
stem epidermis relative color (exact)
plant_trait_ontology
TO:1000018
stem epidermis color
true
true
true
A portion of plant tissue morphology trait (TO:0000843) which is the color of a stem epidermis (PO:0025178).
TO:TermGenie
stem epidermis colour (exact)
TO:TermGenie
stem epidermis relative color (exact)
TO:TermGenie
A flower color trait (TO:0000537) which is the color of a disk flower (PO:0025332).
marieangelique.laporte
2016-01-05T14:21:10Z
disc floret color (exact)
disk floret color (exact)
plant_trait_ontology
TO:1000019
disk flower color
true
true
A flower color trait (TO:0000537) which is the color of a disk flower (PO:0025332).
TO:TermGenie
disc floret color (exact)
TO:TermGenie
disk floret color (exact)
TO:TermGenie
A cardinal organ part morphology trait (TO:0000754) which is the length of a stipule (PO:0020041).
marieangelique.laporte
2016-01-05T14:57:02Z
plant_trait_ontology
TO:1000020
stipule length
true
true
true
A cardinal organ part morphology trait (TO:0000754) which is the length of a stipule (PO:0020041).
TO:TermGenie
A plant structure morphology trait (TO:0000839) which is a quality of a plant ovary (PO:0009072).
cooperl
2016-01-06T01:44:00Z
Poaceae ovary morphology (narrow)
Zea ovary morphology (narrow)
plant_trait_ontology
TO:1000021
plant ovary morphology
true
true
A plant structure morphology trait (TO:0000839) which is a quality of a plant ovary (PO:0009072).
TO:TermGenie
Poaceae ovary morphology (narrow)
TO:TermGenie
Zea ovary morphology (narrow)
TO:TermGenie
A collective plant organ structure trait (TO:0000842) which is the quality of an anther (PO:0009066).
meiera
2016-02-20T00:23:55Z
TO_GIT:385
plant_trait_ontology
TO:1000022
anther morphology trait
A collective plant organ structure trait (TO:0000842) which is the quality of an anther (PO:0009066).
TO:austinmeier
A flower bract morphology trait (TO:0000079) which is the quality of a lemma (PO:0009037).
cooperl
2016-03-16T10:36:57Z
TO_GIT:390
plant_trait_ontology
TO:1000023
lemma morphology trait
A flower bract morphology trait (TO:0000079) which is the quality of a lemma (PO:0009037).
PO:0009037
TO:cooperl
A flower bract morphology trait (TO:0000079) which is the quality of a palea (PO:0009038).
cooperl
2016-03-17T10:36:57Z
TO_GIT:390
plant_trait_ontology
TO:1000024
palea morphology trait
A flower bract morphology trait (TO:0000079) which is the quality of a palea (PO:0009038).
PO:0009038
TO:cooperl
An aluminium content trait (TO:0000995) which is the aluminium cation (CHEBI:63062) composition in a root system (PO:0025025).
TO_GIT:412
root system Al content (exact)
plant_trait_ontology
root Al content (related)
TO:1000025
root system aluminum content
An aluminium content trait (TO:0000995) which is the aluminium cation (CHEBI:63062) composition in a root system (PO:0025025).
TO:cooperl
https://search.proquest.com/docview/1426182399
An arsenic content trait (TO:0006054) which is the arsenic cation (CHEBI:35829) composition in a root system (PO:0025025).
TO_GIT:412
plant_trait_ontology
root As content (related)
TO:1000026
root system arsenic content
An arsenic content trait (TO:0006054) which is the arsenic cation (CHEBI:35829) composition in a root system (PO:0025025).
TO:cooperl
https://search.proquest.com/docview/1426182399
A boron content trait (TO:0006043) which is the boron cation (CHEBI:30168) composition in a root system (PO:0025025).
TO_GIT:412
plant_trait_ontology
root B content (related)
TO:1000027
root system boron content
A boron content trait (TO:0006043) which is the boron cation (CHEBI:30168) composition in a root system (PO:0025025).
TO:cooperl
https://search.proquest.com/docview/1426182399
A barium content trait (TO:0001043) which is the barium cation (CHEBI:39125) composition in a root system (PO:0025025).
TO_GIT:412
plant_trait_ontology
root Ba content (related)
TO:1000028
root system barium content
A barium content trait (TO:0001043) which is the barium cation (CHEBI:39125) composition in a root system (PO:0025025).
TO:cooperl
https://search.proquest.com/docview/1426182399
A calcium content trait (TO:0006047) which is the calcium cation (CHEBI:39123) composition in a root system (PO:0025025).
TO_GIT:412
plant_trait_ontology
root Ca content (related)
TO:1000029
root system calcium content
A calcium content trait (TO:0006047) which is the calcium cation (CHEBI:39123) composition in a root system (PO:0025025).
TO:cooperl
https://search.proquest.com/docview/1426182399
A cadmium content trait (TO:0006059) which is the cadmium cation (CHEBI:63063) composition in a root system (PO:0025025).
TO_GIT:412
plant_trait_ontology
root Cd content (related)
TO:1000030
root system cadmium content
A cadmium content trait (TO:0006059) which is the cadmium cation (CHEBI:63063) composition in a root system (PO:0025025).
TO:cooperl
https://search.proquest.com/docview/1426182399
A cobalt content trait (TO:0001044) which is the cobalt cation (CHEBI:23336) composition in a root system (PO:0025025).
TO_GIT:412
plant_trait_ontology
root Co content (related)
TO:1000031
root system cobalt content
A cobalt content trait (TO:0001044) which is the cobalt cation (CHEBI:23336) composition in a root system (PO:0025025).
TO:cooperl
https://search.proquest.com/docview/1426182399
A chromium content trait (TO:0001045) which is the chromium cation (CHEBI:33516) composition in a root system (PO:0025025).
plant_trait_ontology
root Cr content (related)
TO:1000032
root system chromium content
A chromium content trait (TO:0001045) which is the chromium cation (CHEBI:33516) composition in a root system (PO:0025025).
TO:cooperl
https://search.proquest.com/docview/1426182399
A copper content trait (TO:0020092) which is the copper cation (CHEBI:23378) composition in a root system (PO:0025025).
TO_GIT:412
plant_trait_ontology
root Cu content (related)
TO:1000033
root system copper content
A copper content trait (TO:0020092) which is the copper cation (CHEBI:23378) composition in a root system (PO:0025025).
TO:cooperl
https://search.proquest.com/docview/1426182399
An iron content trait (TO:0020089) which is the iron cation (CHEBI:24875) composition in a root system (PO:0025025).
plant_trait_ontology
root Fe content (related)
TO:1000034
root system iron content
An iron content trait (TO:0020089) which is the iron cation (CHEBI:24875) composition in a root system (PO:0025025).
TO:cooperl
https://search.proquest.com/docview/1426182399
An iodine content trait (TO:0001046) which is the iodine cation (CHEBI:33116) in a root system (PO:0025025).
plant_trait_ontology
root I content (related)
TO:1000035
root system iodine content
An iodine content trait (TO:0001046) which is the iodine cation (CHEBI:33116) in a root system (PO:0025025).
TO:cooperl
https://search.proquest.com/docview/1426182399
A potassium content trait (TO:0000609) which is the potassium cation (CHEBI:29103) composition in a root system (PO:0025025).
TO_GIT:412
plant_trait_ontology
root K content (related)
TO:1000036
root system potassium content
A potassium content trait (TO:0000609) which is the potassium cation (CHEBI:29103) composition in a root system (PO:0025025).
TO:cooperl
https://search.proquest.com/docview/1426182399
A lithium content trait (TO:0006042) which is the lithium cation (CHEBI:49713) composition in a root system (PO:0025025).
TO_GIT:412
plant_trait_ontology
root Li content (related)
TO:1000037
root system lithium content
A lithium content trait (TO:0006042) which is the lithium cation (CHEBI:49713) composition in a root system (PO:0025025).
TO:cooperl
https://search.proquest.com/docview/1426182399
A magnesium content trait (TO:0006044) which is the magnesium cation (CHEBI:18420) composition in a root system (PO:0025025).
TO_GIT:412
plant_trait_ontology
root Mg content (related)
TO:1000038
root system magnesium content
A magnesium content trait (TO:0006044) which is the magnesium cation (CHEBI:18420) composition in a root system (PO:0025025).
TO:cooperl
https://search.proquest.com/docview/1426182399
A manganese content trait (TO:0020091) which is the manganese cation (CHEBI:29035) composition in a root system (PO:0025025).
TO_GIT:412
plant_trait_ontology
root Mn content (related)
TO:1000039
root system manganese content
A manganese content trait (TO:0020091) which is the manganese cation (CHEBI:29035) composition in a root system (PO:0025025).
TO:cooperl
https://search.proquest.com/docview/1426182399
A molybdenum content trait (TO:0006056) which is the molybdenum cation (CHEBI:37239) composition in a root system (PO:0025025).
TO_GIT:412
plant_trait_ontology
root Mo content (related)
TO:1000040
root system molybdenum content
A molybdenum content trait (TO:0006056) which is the molybdenum cation (CHEBI:37239) composition in a root system (PO:0025025).
TO:cooperl
https://search.proquest.com/docview/1426182399
A sodium content trait (TO:0000608) which is the sodium cation (CHEBI:29101) composition in a root system (PO:0025025).
TO_GIT:412
plant_trait_ontology
root Na content (related)
TO:1000041
root system sodium content
A sodium content trait (TO:0000608) which is the sodium cation (CHEBI:29101) composition in a root system (PO:0025025).
TO:cooperl
https://search.proquest.com/docview/1426182399
A nickel content trait (TO:0006051) which is the nickel cation (CHEBI:25516) composition in a root system (PO:0025025).
TO_GIT:412
plant_trait_ontology
root Ni content (related)
TO:1000042
root system nickel content
A nickel content trait (TO:0006051) which is the nickel cation (CHEBI:25516) composition in a root system (PO:0025025).
TO:cooperl
https://search.proquest.com/docview/1426182399
A phosphorus content trait TO:0001024 which is the phosphorus cation (CHEBI:33467) composition in a root system (PO:0025025).
TO_GIT:412
plant_trait_ontology
root P content (related)
TO:1000043
root system phosphorus content
A phosphorus content trait TO:0001024 which is the phosphorus cation (CHEBI:33467) composition in a root system (PO:0025025).
TO:cooperl
https://search.proquest.com/docview/1426182399
A lead content trait (TO:0001047) which is the lead cation (CHEBI:30180) composition in a root system (PO:0025025).
TO_GIT:412
plant_trait_ontology
root Pb content (related)
TO:1000044
root system lead content
A lead content trait (TO:0001047) which is the lead cation (CHEBI:30180) composition in a root system (PO:0025025).
TO:cooperl
https://search.proquest.com/docview/1426182399
A rubidium content trait (TO:0001049) which is the rubidium cation (CHEBI:49847) composition in a root system (PO:0025025).
TO_GIT:412
plant_trait_ontology
root Rb content (related)
TO:1000045
root system rubidium content
A rubidium content trait (TO:0001049) which is the rubidium cation (CHEBI:49847) composition in a root system (PO:0025025).
TO:cooperl
https://search.proquest.com/docview/1426182399
A sulfur content trait (TO:0006046) which is the sulfur cation (CHEBI:29832) composition in a root system (PO:0025025).
TO_GIT:412
plant_trait_ontology
root S content (related)
TO:1000046
root system sulfur content
A sulfur content trait (TO:0006046) which is the sulfur cation (CHEBI:29832) composition in a root system (PO:0025025).
TO:cooperl
https://search.proquest.com/docview/1426182399
A selenium content trait (TO:0006055) which is the selenium ion (CHEBI:60250) composition in a root system (PO:0025025).
TO_GIT:412
plant_trait_ontology
root Se content (related)
TO:1000047
root system selenium content
A selenium content trait (TO:0006055) which is the selenium ion (CHEBI:60250) composition in a root system (PO:0025025).
TO:cooperl
https://search.proquest.com/docview/1426182399
A silicon content trait (TO:0001048) which is the silicon cation (CHEBI:30584) composition in a root system (PO:0025025).
TO_GIT:412
plant_trait_ontology
root Si content (related)
TO:1000048
root system silicon content
A silicon content trait (TO:0001048) which is the silicon cation (CHEBI:30584) composition in a root system (PO:0025025).
TO:cooperl
https://search.proquest.com/docview/1426182399
A mineral and ion content trait (TO:0000465) which is the strontium ion (CHEBI:39130) composition in a root system (PO:0025025).
TO_GIT:412
plant_trait_ontology
root Sr content (related)
TO:1000049
root system strontium content
A mineral and ion content trait (TO:0000465) which is the strontium ion (CHEBI:39130) composition in a root system (PO:0025025).
TO:cooperl
https://search.proquest.com/docview/1426182399
A zinc content trait (TO:0020090) which is the zinc (CHEBI:63056) composition in a root system (PO:0025025).
TO_GIT:412
plant_trait_ontology
root Zn content (related)
TO:1000050
root system zinc content
A zinc content trait (TO:0020090) which is the zinc (CHEBI:63056) composition in a root system (PO:0025025).
CHEBI:63056
TO:cooperl
https://search.proquest.com/docview/1426182399
An aluminium content trait (TO:0000995) which is the aluminium cation (CHEBI:63062) composition in a shoot system (PO:0009006).
TO_GIT:412
shoot system Al content (exact)
plant_trait_ontology
shoot Al content (related)
TO:1000051
shoot system aluminum content
An aluminium content trait (TO:0000995) which is the aluminium cation (CHEBI:63062) composition in a shoot system (PO:0009006).
TO:cooperl
https://search.proquest.com/docview/1426182399
An arsenic content trait (TO:0006054) which is the arsenic cation (CHEBI:35829) composition in a shoot system (PO:0009006).
TO_GIT:412
plant_trait_ontology
shoot As content (related)
TO:1000052
shoot system arsenic content
An arsenic content trait (TO:0006054) which is the arsenic cation (CHEBI:35829) composition in a shoot system (PO:0009006).
TO:cooperl
https://search.proquest.com/docview/1426182399
A boron content trait (TO:0006043) which is the boron cation (CHEBI:30168) composition in a shoot system (PO:0009006).
TO_GIT:412
plant_trait_ontology
shoot B content (related)
TO:1000053
shoot system boron content
A boron content trait (TO:0006043) which is the boron cation (CHEBI:30168) composition in a shoot system (PO:0009006).
TO:cooperl
https://search.proquest.com/docview/1426182399
A barium content trait (TO:0001043) which is the barium cation (CHEBI:39125) composition in a shoot system (PO:0009006).
TO_GIT:412
plant_trait_ontology
shoot Ba content (related)
TO:1000054
shoot system barium content
A barium content trait (TO:0001043) which is the barium cation (CHEBI:39125) composition in a shoot system (PO:0009006).
TO:cooperl
https://search.proquest.com/docview/1426182399
A calcium content trait (TO:0006047) which is the calcium cation (CHEBI:39123) composition in a shoot system (PO:0025025).
TO_GIT:412
plant_trait_ontology
shoot Ca content (related)
TO:1000055
shoot system calcium content
A calcium content trait (TO:0006047) which is the calcium cation (CHEBI:39123) composition in a shoot system (PO:0025025).
TO:cooperl
https://search.proquest.com/docview/1426182399
A cadmium content trait (TO:0006059) which is the cadmium cation (CHEBI:63063) composition in a shoot system (PO:0009006).
TO_GIT:412
plant_trait_ontology
shoot Cd content (related)
TO:1000056
shoot system cadmium content
A cadmium content trait (TO:0006059) which is the cadmium cation (CHEBI:63063) composition in a shoot system (PO:0009006).
TO:cooperl
https://search.proquest.com/docview/1426182399
A cobalt content trait (TO:0001044) which is the cobalt cation (CHEBI:23336) composition in a shoot system (PO:0009006).
TO_GIT:412
plant_trait_ontology
shoot Co content (related)
TO:1000057
shoot system cobalt content
A cobalt content trait (TO:0001044) which is the cobalt cation (CHEBI:23336) composition in a shoot system (PO:0009006).
TO:cooperl
https://search.proquest.com/docview/1426182399
A chromium content trait (TO:0001045) which is the chromium cation (CHEBI:33516) composition in a shoot system (PO:0009006).
TO_GIT:412
plant_trait_ontology
shoot Cr content (related)
TO:1000058
shoot system chromium content
A chromium content trait (TO:0001045) which is the chromium cation (CHEBI:33516) composition in a shoot system (PO:0009006).
TO:cooperl
https://search.proquest.com/docview/1426182399
A copper content trait (TO:0020092) which is the copper cation (CHEBI:23378) composition in a shoot system (PO:0009006).
TO_GIT:412
plant_trait_ontology
shoot Cu content (related)
TO:1000059
shoot system copper content
A copper content trait (TO:0020092) which is the copper cation (CHEBI:23378) composition in a shoot system (PO:0009006).
TO:cooperl
https://search.proquest.com/docview/1426182399
An iron content trait (TO:0020089) which is the iron cation (CHEBI:24875) composition in a shoot system (PO:0009006).
TO_GIT:412
plant_trait_ontology
shoot Fe content (related)
TO:1000060
shoot system iron content
An iron content trait (TO:0020089) which is the iron cation (CHEBI:24875) composition in a shoot system (PO:0009006).
TO:cooperl
https://search.proquest.com/docview/1426182399
An iodine content trait (TO:0001046) which is the iodine cation (CHEBI:33116) in a shoot system (PO:0009006).
TO_GIT:412
plant_trait_ontology
shoot I content (related)
TO:1000061
shoot system iodine content
An iodine content trait (TO:0001046) which is the iodine cation (CHEBI:33116) in a shoot system (PO:0009006).
TO:cooperl
https://search.proquest.com/docview/1426182399
A lithium content trait (TO:0006042) which is the lithium cation (CHEBI:49713) composition in a shoot system (PO:0009006).
TO_GIT:412
plant_trait_ontology
shoot Li content (related)
TO:1000062
shoot system lithium content
A lithium content trait (TO:0006042) which is the lithium cation (CHEBI:49713) composition in a shoot system (PO:0009006).
TO:cooperl
https://search.proquest.com/docview/1426182399
A magnesium content trait (TO:0006044) which is the magnesium cation (CHEBI:18420) composition in a shoot system (PO:0009006).
TO_GIT:412
plant_trait_ontology
shoot Mg content (related)
TO:1000063
shoot system magnesium content
A magnesium content trait (TO:0006044) which is the magnesium cation (CHEBI:18420) composition in a shoot system (PO:0009006).
TO:cooperl
https://search.proquest.com/docview/1426182399
A manganese content trait (TO:0020091) which is the manganese cation (CHEBI:29035) composition in a shoot system (PO:0009006).
TO_GIT:412
plant_trait_ontology
shoot Mn content (related)
TO:1000064
shoot system manganese content
A manganese content trait (TO:0020091) which is the manganese cation (CHEBI:29035) composition in a shoot system (PO:0009006).
TO:cooperl
https://search.proquest.com/docview/1426182399
A molybdenum content trait (TO:0006056) which is the (CHEBI:37239) in a shoot system (PO:0009006).
TO_GIT:412
plant_trait_ontology
shoot Mo content (related)
TO:1000065
shoot system molybdenum content
A molybdenum content trait (TO:0006056) which is the (CHEBI:37239) in a shoot system (PO:0009006).
TO:cooperl
https://search.proquest.com/docview/1426182399
A nickel content trait (TO:0006051) which is the nickel cation (CHEBI:25516) composition in a shoot system (PO:0009006).
TO_GIT:412
plant_trait_ontology
shoot Ni content (related)
TO:1000066
shoot system nickel content
A nickel content trait (TO:0006051) which is the nickel cation (CHEBI:25516) composition in a shoot system (PO:0009006).
TO:cooperl
https://search.proquest.com/docview/1426182399
A lead content trait (TO:0001047) which is the lead cation (CHEBI:30180) composition in a shoot system (PO:0009006).
TO_GIT:412
plant_trait_ontology
shoot Pb content (related)
TO:1000067
shoot system lead content
A lead content trait (TO:0001047) which is the lead cation (CHEBI:30180) composition in a shoot system (PO:0009006).
TO:cooperl
https://search.proquest.com/docview/1426182399
A rubidium content trait (TO:0001049) which is the rubidium cation (CHEBI:49847) composition in a shoot system (PO:0009006).
TO_GIT:412
plant_trait_ontology
shoot Rb content (related)
TO:1000068
shoot system rubidium content
A rubidium content trait (TO:0001049) which is the rubidium cation (CHEBI:49847) composition in a shoot system (PO:0009006).
TO:cooperl
https://search.proquest.com/docview/1426182399
A sulfur content trait (TO:0006046) which is the sulfur cation (CHEBI:29832) composition in a shoot system (PO:0009006).
TO_GIT:412
plant_trait_ontology
shoot S content (related)
TO:1000069
shoot system sulfur content
A sulfur content trait (TO:0006046) which is the sulfur cation (CHEBI:29832) composition in a shoot system (PO:0009006).
TO:cooperl
https://search.proquest.com/docview/1426182399
A selenium content trait (TO:0006055) which is the selenium ion (CHEBI:60250) composition in a shoot system (PO:0009006).
TO_GIT:412
plant_trait_ontology
shoot Se content (related)
TO:1000070
shoot system selenium content
A selenium content trait (TO:0006055) which is the selenium ion (CHEBI:60250) composition in a shoot system (PO:0009006).
TO:cooperl
https://search.proquest.com/docview/1426182399
A silicon content trait (TO:0001048) which is the silicon cation (CHEBI:30584) composition in a shoot system (PO:0009006).
TO_GIT:412
plant_trait_ontology
shoot Si content (related)
TO:1000071
shoot system silicon content
A silicon content trait (TO:0001048) which is the silicon cation (CHEBI:30584) composition in a shoot system (PO:0009006).
TO:cooperl
https://search.proquest.com/docview/1426182399
A strontium content trait (TO:0001050) which is the strontium ion (CHEBI:39130) composition in a shoot system (PO:0009006).
TO_GIT:412
plant_trait_ontology
shoot Sr content (related)
TO:1000072
shoot system strontium content
A strontium content trait (TO:0001050) which is the strontium ion (CHEBI:39130) composition in a shoot system (PO:0009006).
TO:cooperl
https://search.proquest.com/docview/1426182399
A zinc content trait (TO:0020090) which is the zinc (CHEBI:63056) composition in the shoot system (PO:0009006).
TO_GIT:412
plant_trait_ontology
shooCFt Zn content (related)
TO:1000073
shoot system zinc content
A zinc content trait (TO:0020090) which is the zinc (CHEBI:63056) composition in the shoot system (PO:0009006).
CHEBI:63056
TO:cooperl
https://search.proquest.com/docview/1426182399
An essential fatty acid (TO:0000604) content which is the amount of a polyunsaturated, 18 carbon long fatty acid, with three double bonds.
Laurel_Cooper
2020-09-16T12:00:00Z
plant_trait_ontology
TO:1000074
There are two forms of linolenic acid, alpha and gamma, depending upon where the double bonds occur.
linolenic acid content
An essential fatty acid (TO:0000604) content which is the amount of a polyunsaturated, 18 carbon long fatty acid, with three double bonds.
CHEBI:25048
TO:cooperl
A fatty acid content (TO:0000604) which is the amount of a straight-chain, sixteen-carbon, saturated long-chain fatty acid in a plant structure.
Laurel_Cooper
2020-09-16T12:00:00Z
hexadecanoic acid (exact)
plant_trait_ontology
TO:1000075
palmitic acid content
A fatty acid content (TO:0000604) which is the amount of a straight-chain, sixteen-carbon, saturated long-chain fatty acid in a plant structure.
CHEBI:15756
TO:cooperl