1236
185
1
http://edamontology.org/operation_0317
EST and cDNA sequence analysis
'EST and cDNA sequence analysis' SubClassOf 'Obsolete concept (EDAM)'
'EST and cDNA sequence analysis' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0316
Functional profiling
'Functional profiling' SubClassOf 'Obsolete concept (EDAM)'
'Functional profiling' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0312
Sequencing-based expression profile data processing
'Sequencing-based expression profile data processing' SubClassOf 'Obsolete concept (EDAM)'
'Sequencing-based expression profile data processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2748
Database name (Osteogenesis)
'Database name (Osteogenesis)' SubClassOf 'Obsolete concept (EDAM)'
'Database name (Osteogenesis)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0899
Protein structural motifs and surfaces
'Protein structural motifs and surfaces' SubClassOf 'Obsolete concept (EDAM)'
'Protein structural motifs and surfaces' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2018
Annotation
'Annotation' SubClassOf 'Obsolete concept (EDAM)'
'Annotation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2747
Database name (CMD)
'Database name (CMD)' SubClassOf 'Obsolete concept (EDAM)'
'Database name (CMD)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0894
Amino acid annotation
'Amino acid annotation' SubClassOf 'Obsolete concept (EDAM)'
'Amino acid annotation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2740
Gene name (Genolist)
'Gene name (Genolist)' SubClassOf 'Obsolete concept (EDAM)'
'Gene name (Genolist)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0895
Peptide annotation
'Peptide annotation' SubClassOf 'Obsolete concept (EDAM)'
'Peptide annotation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2743
Gene name (HUGO)
'Gene name (HUGO)' SubClassOf 'Obsolete concept (EDAM)'
'Gene name (HUGO)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0891
Sequence-3D profile alignment
'Sequence-3D profile alignment' SubClassOf 'Obsolete concept (EDAM)'
'Sequence-3D profile alignment' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0303
Protein fold recognition
'Protein fold recognition' SubClassOf 'has topic' some 'Protein fold recognition'
http://edamontology.org/data_2735
Database name (SwissRegulon)
'Database name (SwissRegulon)' SubClassOf 'Obsolete concept (EDAM)'
'Database name (SwissRegulon)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2733
Genus name (virus)
'Genus name (virus)' SubClassOf 'Obsolete concept (EDAM)'
'Genus name (virus)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2734
Family name (virus)
'Family name (virus)' SubClassOf 'Obsolete concept (EDAM)'
'Family name (virus)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2028
Experimental data
'Experimental data' SubClassOf 'Obsolete concept (EDAM)'
'Experimental data' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2023
Sequence mask parameter
'Sequence mask parameter' SubClassOf 'Obsolete concept (EDAM)'
'Sequence mask parameter' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2022
Vienna RNA structural data
'Vienna RNA structural data' SubClassOf 'Obsolete concept (EDAM)'
'Vienna RNA structural data' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0876
Protein features report (secondary structure)
'Protein features report (secondary structure)' SubClassOf 'Obsolete concept (EDAM)'
'Protein features report (secondary structure)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0877
Protein features report (super-secondary)
'Protein features report (super-secondary)' SubClassOf 'Obsolete concept (EDAM)'
'Protein features report (super-secondary)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2767
Identifier with metadata
'Identifier with metadata' SubClassOf 'Identifier'
'Identifier with metadata' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2768
Gene symbol annotation
'Gene symbol annotation' SubClassOf 'Obsolete concept (EDAM)'
'Gene symbol annotation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0875
Protein topology
'Protein topology' SubClassOf 'Obsolete concept (EDAM)'
'Protein topology' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0879
Secondary structure alignment metadata (protein)
'Secondary structure alignment metadata (protein)' SubClassOf 'Obsolete concept (EDAM)'
'Secondary structure alignment metadata (protein)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0872
Phylogenetic tree
'Phylogenetic tree' SubClassOf 'Data'
'Phylogenetic tree' SubClassOf 'Phylogenetic data'
http://edamontology.org/data_2763
Locus annotation
'Locus annotation' SubClassOf 'Obsolete concept (EDAM)'
'Locus annotation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2765
Term ID list
'Term ID list' SubClassOf 'Obsolete concept (EDAM)'
'Term ID list' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2041
Genome version information
'Genome version information' SubClassOf 'Obsolete concept (EDAM)'
'Genome version information' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0885
Structure database search results
'Structure database search results' SubClassOf 'Obsolete concept (EDAM)'
'Structure database search results' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0886
Structure alignment
'Structure alignment' SubClassOf 'has topic' some 'Structure comparison'
'Structure alignment' SubClassOf 'has topic' some 'Structure analysis'
http://edamontology.org/data_0889
Structural profile
'Structural profile' SubClassOf 'has topic' some 'Structure comparison'
'Structural profile' SubClassOf 'has topic' some 'Structure analysis'
http://edamontology.org/data_2046
Nucleic acid sequence record (lite)
'Nucleic acid sequence record (lite)' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid sequence record (lite)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2043
Sequence record lite
'Sequence record lite' SubClassOf 'Obsolete concept (EDAM)'
'Sequence record lite' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0882
Secondary structure alignment metadata (RNA)
'Secondary structure alignment metadata (RNA)' SubClassOf 'Obsolete concept (EDAM)'
'Secondary structure alignment metadata (RNA)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2754
Gene features report (intron)
'Gene features report (intron)' SubClassOf 'Obsolete concept (EDAM)'
'Gene features report (intron)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0884
Tertiary structure record
'Tertiary structure record' SubClassOf 'Obsolete concept (EDAM)'
'Tertiary structure record' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2047
Protein sequence record (lite)
'Protein sequence record (lite)' SubClassOf 'Obsolete concept (EDAM)'
'Protein sequence record (lite)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2053
Structural data
'Structural data' SubClassOf 'Obsolete concept (EDAM)'
'Structural data' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1703
ChEBI entry format
'ChEBI entry format' SubClassOf 'Obsolete concept (EDAM)'
'ChEBI entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1702
ChemSpider entry format
'ChemSpider entry format' SubClassOf 'Obsolete concept (EDAM)'
'ChemSpider entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1701
PubChem entry format
'PubChem entry format' SubClassOf 'Obsolete concept (EDAM)'
'PubChem entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1700
KEGG GLYCAN entry format
'KEGG GLYCAN entry format' SubClassOf 'Obsolete concept (EDAM)'
'KEGG GLYCAN entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1565
Protein-protein interaction report
'Protein-protein interaction report' SubClassOf 'Obsolete concept (EDAM)'
'Protein-protein interaction report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_2661
Toxins and targets
'Toxins and targets' SubClassOf 'Toxicology'
'Toxins and targets' SubClassOf 'Small molecules'
'Toxins and targets' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1564
Protein fold recognition report
'Protein fold recognition report' SubClassOf 'Obsolete concept (EDAM)'
'Protein fold recognition report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1561
CATH functional category
'CATH functional category' SubClassOf 'Obsolete concept (EDAM)'
'CATH functional category' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1560
CATH structurally similar group
'CATH structurally similar group' SubClassOf 'Obsolete concept (EDAM)'
'CATH structurally similar group' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1706
KEGG DRUG entry format
'KEGG DRUG entry format' SubClassOf 'Obsolete concept (EDAM)'
'KEGG DRUG entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1704
MSDchem ligand dictionary entry format
'MSDchem ligand dictionary entry format' SubClassOf 'Obsolete concept (EDAM)'
'MSDchem ligand dictionary entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1567
Protein-nucleic acid interactions report
'Protein-nucleic acid interactions report' SubClassOf 'Obsolete concept (EDAM)'
'Protein-nucleic acid interactions report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1591
Vienna RNA parameters
'Vienna RNA parameters' SubClassOf 'Obsolete concept (EDAM)'
'Vienna RNA parameters' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1592
Vienna RNA structure constraints
'Vienna RNA structure constraints' SubClassOf 'Obsolete concept (EDAM)'
'Vienna RNA structure constraints' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1593
Vienna RNA concentration data
'Vienna RNA concentration data' SubClassOf 'Obsolete concept (EDAM)'
'Vienna RNA concentration data' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1594
Vienna RNA calculated energy
'Vienna RNA calculated energy' SubClassOf 'Obsolete concept (EDAM)'
'Vienna RNA calculated energy' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2079
Search parameter
'Search parameter' SubClassOf 'Obsolete concept (EDAM)'
'Search parameter' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1597
Codon usage table
'Codon usage table' SubClassOf 'Data'
'Codon usage table' SubClassOf 'Codon usage data'
http://edamontology.org/data_1599
Codon adaptation index
'Codon adaptation index' SubClassOf 'Obsolete concept (EDAM)'
'Codon adaptation index' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2722
Protein features report (disordered structure)
'Protein features report (disordered structure)' SubClassOf 'Obsolete concept (EDAM)'
'Protein features report (disordered structure)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2724
Embryo report
'Embryo report' SubClassOf 'Obsolete concept (EDAM)'
'Embryo report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2726
Inhibitor annotation
'Inhibitor annotation' SubClassOf 'Obsolete concept (EDAM)'
'Inhibitor annotation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2081
Secondary structure
'Secondary structure' SubClassOf 'Obsolete concept (EDAM)'
'Secondary structure' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2083
Alignment data
'Alignment data' SubClassOf 'Obsolete concept (EDAM)'
'Alignment data' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1586
Nucleic acid melting temperature
'Nucleic acid melting temperature' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid melting temperature' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0005
Resource type
'Resource type' SubClassOf 'Obsolete concept (EDAM)'
'Resource type' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0007
Tool
'Tool' SubClassOf 'Obsolete concept (EDAM)'
'Tool' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3147
Mass spectrometry experiment
'Mass spectrometry experiment' SubClassOf 'Obsolete concept (EDAM)'
'Mass spectrometry experiment' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3298
Phenomics
'Phenomics' SubClassOf 'Omics'
http://edamontology.org/data_3143
SCOP superfamily
'SCOP superfamily' SubClassOf 'Obsolete concept (EDAM)'
'SCOP superfamily' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3144
SCOP family
'SCOP family' SubClassOf 'Obsolete concept (EDAM)'
'SCOP family' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3145
SCOP protein
'SCOP protein' SubClassOf 'Obsolete concept (EDAM)'
'SCOP protein' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3295
Epigenetics
'Epigenetics' SubClassOf 'Molecular genetics'
'Epigenetics' SubClassOf 'Genetics'
http://edamontology.org/data_3146
SCOP species
'SCOP species' SubClassOf 'Obsolete concept (EDAM)'
'SCOP species' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3140
Nucleic acid features (immunoglobulin gene structure)
'Nucleic acid features (immunoglobulin gene structure)' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid features (immunoglobulin gene structure)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3142
SCOP fold
'SCOP fold' SubClassOf 'Obsolete concept (EDAM)'
'SCOP fold' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3141
SCOP class
'SCOP class' SubClassOf 'Obsolete concept (EDAM)'
'SCOP class' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_2197
OWL format
'OWL format' SubClassOf 'XML'
'OWL format' SubClassOf 'RDF format'
http://edamontology.org/data_1125
Comparison matrix type
'Comparison matrix type' SubClassOf 'Obsolete concept (EDAM)'
'Comparison matrix type' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1121
BLAST sequence alignment type
'BLAST sequence alignment type' SubClassOf 'Obsolete concept (EDAM)'
'BLAST sequence alignment type' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1122
Phylogenetic tree type
'Phylogenetic tree type' SubClassOf 'Obsolete concept (EDAM)'
'Phylogenetic tree type' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1120
Sequence alignment type
'Sequence alignment type' SubClassOf 'Obsolete concept (EDAM)'
'Sequence alignment type' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_2188
UniProt format
'UniProt format' SubClassOf 'Obsolete concept (EDAM)'
'UniProt format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_2189
ipi
'ipi' SubClassOf 'Obsolete concept (EDAM)'
'ipi' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1747
PDB atom record format
'PDB atom record format' SubClassOf 'Obsolete concept (EDAM)'
'PDB atom record format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3165
NGS experiment
'NGS experiment' SubClassOf 'Obsolete concept (EDAM)'
'NGS experiment' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1150
Disease ID
'Disease ID' SubClassOf 'is identifier of' some 'Disease report'
'Disease ID' SubClassOf 'Identifier (typed)'
'Disease ID' SubClassOf http://edamontology.org/data_3667
http://edamontology.org/format_1760
CATH chain report format
'CATH chain report format' SubClassOf 'Obsolete concept (EDAM)'
'CATH chain report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1761
CATH PDB report format
'CATH PDB report format' SubClassOf 'Obsolete concept (EDAM)'
'CATH PDB report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1152
HIVDB identifier
'HIVDB identifier' SubClassOf 'Obsolete concept (EDAM)'
'HIVDB identifier' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1156
Pathway ID (aMAZE)
'Pathway ID (aMAZE)' SubClassOf 'Obsolete concept (EDAM)'
'Pathway ID (aMAZE)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0851
Sequence mask character
'Sequence mask character' SubClassOf 'Obsolete concept (EDAM)'
'Sequence mask character' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3105
Geotemporal metadata
'Geotemporal metadata' SubClassOf 'Obsolete concept (EDAM)'
'Geotemporal metadata' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1906
Quantitative trait locus
'Quantitative trait locus' SubClassOf 'Obsolete concept (EDAM)'
'Quantitative trait locus' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3101
Protein domain classification node
'Protein domain classification node' SubClassOf 'Obsolete concept (EDAM)'
'Protein domain classification node' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_2542
Protein features (domains) format
'Protein features (domains) format' SubClassOf 'Obsolete concept (EDAM)'
'Protein features (domains) format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0859
Sequence signature model
'Sequence signature model' SubClassOf 'Obsolete concept (EDAM)'
'Sequence signature model' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0852
Sequence mask type
'Sequence mask type' SubClassOf 'Obsolete concept (EDAM)'
'Sequence mask type' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3107
Sequence feature name
'Sequence feature name' SubClassOf 'Sequence feature identifier'
'Sequence feature name' SubClassOf 'Name'
'Sequence feature name' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0855
Sequence metadata
'Sequence metadata' SubClassOf 'Obsolete concept (EDAM)'
'Sequence metadata' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0854
Sequence length specification
'Sequence length specification' SubClassOf 'Obsolete concept (EDAM)'
'Sequence length specification' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_2159
Gene features (coding region) format
'Gene features (coding region) format' SubClassOf 'Gene annotation format'
'Gene features (coding region) format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0861
Sequence alignment (words)
'Sequence alignment (words)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence alignment (words)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3116
Microarray protocol annotation
'Microarray protocol annotation' SubClassOf 'Obsolete concept (EDAM)'
'Microarray protocol annotation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0866
Sequence alignment metadata
'Sequence alignment metadata' SubClassOf 'Obsolete concept (EDAM)'
'Sequence alignment metadata' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0864
Sequence alignment parameter
'Sequence alignment parameter' SubClassOf 'Obsolete concept (EDAM)'
'Sequence alignment parameter' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3119
Sequence features (compositionally-biased regions)
'Sequence features (compositionally-biased regions)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence features (compositionally-biased regions)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0863
Sequence alignment
'Sequence alignment' SubClassOf 'has topic' some 'Sequence comparison'
'Sequence alignment' SubClassOf 'has topic' some 'Sequence analysis'
http://edamontology.org/data_3118
Protein features report (topological domains)
'Protein features report (topological domains)' SubClassOf 'Obsolete concept (EDAM)'
'Protein features report (topological domains)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1782
NCBI gene report format
'NCBI gene report format' SubClassOf 'Obsolete concept (EDAM)'
'NCBI gene report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3122
Nucleic acid features (difference and change)
'Nucleic acid features (difference and change)' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid features (difference and change)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3123
Nucleic acid features report (expression signal)
'Nucleic acid features report (expression signal)' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid features report (expression signal)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3126
Nucleic acid repeats (report)
'Nucleic acid repeats (report)' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid repeats (report)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3125
Nucleic acid features report (binding)
'Nucleic acid features report (binding)' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid features report (binding)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3127
Nucleic acid features report (replication and recombination)
'Nucleic acid features report (replication and recombination)' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid features report (replication and recombination)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_2560
STRING entry format
'STRING entry format' SubClassOf 'Obsolete concept (EDAM)'
'STRING entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0831
MeSH vocabulary
'MeSH vocabulary' SubClassOf 'Obsolete concept (EDAM)'
'MeSH vocabulary' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3129
Protein features report (repeats)
'Protein features report (repeats)' SubClassOf 'Obsolete concept (EDAM)'
'Protein features report (repeats)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0832
HGNC vocabulary
'HGNC vocabulary' SubClassOf 'Obsolete concept (EDAM)'
'HGNC vocabulary' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0835
UMLS vocabulary
'UMLS vocabulary' SubClassOf 'Obsolete concept (EDAM)'
'UMLS vocabulary' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_2562
Amino acid identifier format
'Amino acid identifier format' SubClassOf 'Obsolete concept (EDAM)'
'Amino acid identifier format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1101
TREMBL accession
'TREMBL accession' SubClassOf 'Obsolete concept (EDAM)'
'TREMBL accession' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_2175
Gene cluster format
'Gene cluster format' SubClassOf 'Obsolete concept (EDAM)'
'Gene cluster format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3135
Nucleic acid features report (signal or transit peptide)
'Nucleic acid features report (signal or transit peptide)' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid features report (signal or transit peptide)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3133
Nucleic acid features (stem loop)
'Nucleic acid features (stem loop)' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid features (stem loop)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3132
Nucleic acid features (d-loop)
'Nucleic acid features (d-loop)' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid features (d-loop)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3139
Nucleic acid features report (STS)
'Nucleic acid features report (STS)' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid features report (STS)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3138
Transcriptional features (report)
'Transcriptional features (report)' SubClassOf 'Obsolete concept (EDAM)'
'Transcriptional features (report)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3137
Non-coding RNA
'Non-coding RNA' SubClassOf 'Obsolete concept (EDAM)'
'Non-coding RNA' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2990
Classification
'Classification' SubClassOf 'Analysis'
'Classification' SubClassOf 'Operation'
http://edamontology.org/data_0843
Database entry
'Database entry' SubClassOf 'Obsolete concept (EDAM)'
'Database entry' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2993
Molecular interaction data processing
'Molecular interaction data processing' SubClassOf 'Obsolete concept (EDAM)'
'Molecular interaction data processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2009
Ordered locus name
'Ordered locus name' SubClassOf 'Obsolete concept (EDAM)'
'Ordered locus name' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1111
EMBOSS listfile
'EMBOSS listfile' SubClassOf 'Obsolete concept (EDAM)'
'EMBOSS listfile' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1110
EMBOSS sequence type
'EMBOSS sequence type' SubClassOf 'Obsolete concept (EDAM)'
'EMBOSS sequence type' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1431
Phylogenetic property values format
'Phylogenetic property values format' SubClassOf 'Obsolete concept (EDAM)'
'Phylogenetic property values format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3130
Sequence motif matches (protein)
'Sequence motif matches (protein)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence motif matches (protein)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3131
Sequence motif matches (nucleic acid)
'Sequence motif matches (nucleic acid)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence motif matches (nucleic acid)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_1832
Residue contact calculation (residue-nucleic acid)
'Residue contact calculation (residue-nucleic acid)' SubClassOf 'Protein-nucleic acid binding site analysis'
'Residue contact calculation (residue-nucleic acid)' SubClassOf 'Residue contact calculation'
'Residue contact calculation (residue-nucleic acid)' SubClassOf 'Protein structural motif recognition'
'Residue contact calculation (residue-nucleic acid)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_1834
Residue contact calculation (residue-metal)
'Residue contact calculation (residue-metal)' SubClassOf 'Residue contact calculation'
'Residue contact calculation (residue-metal)' SubClassOf 'Protein binding site prediction (from structure)'
'Residue contact calculation (residue-metal)' SubClassOf 'Residue interaction calculation'
http://edamontology.org/operation_1835
Residue contact calculation (residue-negative ion)
'Residue contact calculation (residue-negative ion)' SubClassOf 'Residue contact calculation'
'Residue contact calculation (residue-negative ion)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_1831
Metal-bound cysteine detection
'Metal-bound cysteine detection' SubClassOf 'Residue interaction calculation'
http://edamontology.org/topic_0922
Primers
'Primers' SubClassOf 'Gene transcription features'
'Primers' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_1826
Full torsion angle calculation
'Full torsion angle calculation' SubClassOf 'Torsion angle calculation'
'Full torsion angle calculation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_1825
Backbone torsion angle calculation
'Backbone torsion angle calculation' SubClassOf 'Torsion angle calculation'
'Backbone torsion angle calculation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_1828
Tau angle calculation
'Tau angle calculation' SubClassOf 'Torsion angle calculation'
'Tau angle calculation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_1827
Cysteine torsion angle calculation
'Cysteine torsion angle calculation' SubClassOf 'Torsion angle calculation'
'Cysteine torsion angle calculation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2337
Resource metadata
'Resource metadata' SubClassOf 'Data'
'Resource metadata' SubClassOf 'Report'
http://edamontology.org/operation_1845
PDB file sequence retrieval
'PDB file sequence retrieval' SubClassOf 'Obsolete concept (EDAM)'
'PDB file sequence retrieval' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_1846
HET group detection
'HET group detection' SubClassOf 'Residue contact calculation (residue-ligand)'
'HET group detection' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_1843
Residue packing validation
'Residue packing validation' SubClassOf 'Residue non-canonical interaction detection'
'Residue packing validation' SubClassOf 'Protein model validation'
http://edamontology.org/operation_1841
Rotamer likelihood prediction
'Rotamer likelihood prediction' SubClassOf 'Protein modelling (side chains)'
'Rotamer likelihood prediction' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_1842
Proline mutation value calculation
'Proline mutation value calculation' SubClassOf 'Protein modelling (mutation)'
'Proline mutation value calculation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_1839
Salt bridge calculation
'Salt bridge calculation' SubClassOf 'Residue contact calculation (residue-residue)'
'Salt bridge calculation' SubClassOf 'Residue interaction calculation'
http://edamontology.org/operation_1838
Residue contact calculation (residue-ligand)
'Residue contact calculation (residue-ligand)' SubClassOf 'Protein binding site prediction (from structure)'
'Residue contact calculation (residue-ligand)' SubClassOf 'Residue contact calculation'
'Residue contact calculation (residue-ligand)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_1837
Residue symmetry contact calculation
'Residue symmetry contact calculation' SubClassOf 'Residue contact calculation (residue-residue)'
'Residue symmetry contact calculation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_1836
Residue bump detection
'Residue bump detection' SubClassOf 'Residue non-canonical interaction detection'
'Residue bump detection' SubClassOf 'Protein model validation'
http://edamontology.org/operation_2948
Molecular interaction analysis
'Molecular interaction analysis' SubClassOf 'Obsolete concept (EDAM)'
'Molecular interaction analysis' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2364
2D PAGE report
'2D PAGE report' SubClassOf 'Obsolete concept (EDAM)'
'2D PAGE report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2363
2D PAGE data
'2D PAGE data' SubClassOf 'Obsolete concept (EDAM)'
'2D PAGE data' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_1813
Sequence retrieval
'Sequence retrieval' SubClassOf 'Obsolete concept (EDAM)'
'Sequence retrieval' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2360
Domain-domain interaction (indirect)
'Domain-domain interaction (indirect)' SubClassOf 'Obsolete concept (EDAM)'
'Domain-domain interaction (indirect)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2952
Structure alignment processing
'Structure alignment processing' SubClassOf 'Obsolete concept (EDAM)'
'Structure alignment processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2951
Alignment processing
'Alignment processing' SubClassOf 'Obsolete concept (EDAM)'
'Alignment processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2359
Domain-domain interactions
'Domain-domain interactions' SubClassOf 'Obsolete concept (EDAM)'
'Domain-domain interactions' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_1820
Protein residue surface calculation (vacuum accessible)
'Protein residue surface calculation (vacuum accessible)' SubClassOf 'Protein residue surface calculation'
'Protein residue surface calculation (vacuum accessible)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2358
Domain-nucleic acid interaction report
'Domain-nucleic acid interaction report' SubClassOf 'Obsolete concept (EDAM)'
'Domain-nucleic acid interaction report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2357
Protein signature type
'Protein signature type' SubClassOf 'Obsolete concept (EDAM)'
'Protein signature type' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_1823
Protein surface calculation (accessible molecular)
'Protein surface calculation (accessible molecular)' SubClassOf 'Protein surface calculation'
'Protein surface calculation (accessible molecular)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_1824
Protein surface calculation (accessible)
'Protein surface calculation (accessible)' SubClassOf 'Protein surface calculation'
'Protein surface calculation (accessible)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_1821
Protein residue surface calculation (accessible molecular)
'Protein residue surface calculation (accessible molecular)' SubClassOf 'Protein residue surface calculation'
'Protein residue surface calculation (accessible molecular)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_1822
Protein residue surface calculation (vacuum molecular)
'Protein residue surface calculation (vacuum molecular)' SubClassOf 'Protein residue surface calculation'
'Protein residue surface calculation (vacuum molecular)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_1817
Protein atom surface calculation (accessible)
'Protein atom surface calculation (accessible)' SubClassOf 'Protein atom surface calculation'
'Protein atom surface calculation (accessible)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_1816
Surface rendering
'Surface rendering' SubClassOf 'Protein surface calculation'
'Surface rendering' SubClassOf 'Protein surface analysis'
http://edamontology.org/operation_1814
Structure retrieval
'Structure retrieval' SubClassOf 'Obsolete concept (EDAM)'
'Structure retrieval' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_3563
RNA-seq read count analysis
'RNA-seq read count analysis' SubClassOf 'Nucleic acid sequence analysis'
'RNA-seq read count analysis' SubClassOf http://edamontology.org/operation_3680
http://edamontology.org/operation_3565
RNA-seq time series data analysis
'RNA-seq time series data analysis' SubClassOf 'Nucleic acid sequence analysis'
'RNA-seq time series data analysis' SubClassOf http://edamontology.org/operation_3680
http://edamontology.org/operation_1819
Protein residue surface calculation (accessible)
'Protein residue surface calculation (accessible)' SubClassOf 'Protein residue surface calculation'
'Protein residue surface calculation (accessible)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_1818
Protein atom surface calculation (accessible molecular)
'Protein atom surface calculation (accessible molecular)' SubClassOf 'Protein atom surface calculation'
'Protein atom surface calculation (accessible molecular)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2946
Alignment analysis
'Alignment analysis' SubClassOf 'Obsolete concept (EDAM)'
'Alignment analysis' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2300
Gene name (NCBI)
'Gene name (NCBI)' SubClassOf 'Obsolete concept (EDAM)'
'Gene name (NCBI)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2495
Gene expression data analysis
'Gene expression data analysis' SubClassOf 'Operation (typed)'
'Gene expression data analysis' SubClassOf 'Analysis'
http://edamontology.org/operation_2496
Gene regulatory network processing
'Gene regulatory network processing' SubClassOf 'Obsolete concept (EDAM)'
'Gene regulatory network processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2307
Virus annotation
'Virus annotation' SubClassOf 'Obsolete concept (EDAM)'
'Virus annotation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2497
Pathway or network analysis
'Pathway or network analysis' SubClassOf 'has input' some 'Pathway or network'
'Pathway or network analysis' SubClassOf 'Pathway or network processing'
'Pathway or network analysis' SubClassOf 'Analysis'
'Pathway or network analysis' SubClassOf 'has topic' some 'Molecular interactions, pathways and networks'
http://edamontology.org/operation_2498
Sequencing-based expression profile data analysis
'Sequencing-based expression profile data analysis' SubClassOf 'Obsolete concept (EDAM)'
'Sequencing-based expression profile data analysis' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2491
Hydrogen bond calculation (inter-residue)
'Hydrogen bond calculation (inter-residue)' SubClassOf 'Hydrogen bond calculation'
'Hydrogen bond calculation (inter-residue)' SubClassOf 'Residue contact calculation (residue-residue)'
'Hydrogen bond calculation (inter-residue)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2928
Alignment
'Alignment' SubClassOf 'Analysis'
'Alignment' SubClassOf 'Operation'
http://edamontology.org/operation_2493
Codon usage data processing
'Codon usage data processing' SubClassOf 'Obsolete concept (EDAM)'
'Codon usage data processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2308
Virus annotation (taxonomy)
'Virus annotation (taxonomy)' SubClassOf 'Obsolete concept (EDAM)'
'Virus annotation (taxonomy)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2490
Residue contact calculation (residue-residue)
'Residue contact calculation (residue-residue)' SubClassOf 'Residue contact calculation'
'Residue contact calculation (residue-residue)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2932
Hopp and Woods plotting
'Hopp and Woods plotting' SubClassOf 'Peptide immunogenicity prediction'
'Hopp and Woods plotting' SubClassOf 'Plotting'
'Hopp and Woods plotting' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2931
Secondary structure comparison
'Secondary structure comparison' SubClassOf 'has topic' some 'Structure comparison'
'Secondary structure comparison' SubClassOf 'has topic' some 'Structure analysis'
http://edamontology.org/data_0901
Protein features report (domains)
'Protein features report (domains)' SubClassOf 'Obsolete concept (EDAM)'
'Protein features report (domains)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0900
Protein domain classification
'Protein domain classification' SubClassOf 'Obsolete concept (EDAM)'
'Protein domain classification' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0903
Protein folding report
'Protein folding report' SubClassOf 'Obsolete concept (EDAM)'
'Protein folding report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0902
Protein architecture report
'Protein architecture report' SubClassOf 'Obsolete concept (EDAM)'
'Protein architecture report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2486
Topology diagram drawing
'Topology diagram drawing' SubClassOf 'Protein secondary structure visualisation'
'Topology diagram drawing' SubClassOf 'Structure visualisation'
http://edamontology.org/operation_2485
Helical wheel drawing
'Helical wheel drawing' SubClassOf 'Protein secondary structure visualisation'
'Helical wheel drawing' SubClassOf 'Structure visualisation'
http://edamontology.org/operation_2482
Secondary structure processing
'Secondary structure processing' SubClassOf 'Obsolete concept (EDAM)'
'Secondary structure processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2483
Structure comparison
'Structure comparison' SubClassOf 'has topic' some 'Structure comparison'
'Structure comparison' SubClassOf 'has topic' some 'Structure analysis'
http://edamontology.org/operation_2480
Structure analysis
'Structure analysis' SubClassOf 'Operation (typed)'
'Structure analysis' SubClassOf 'Analysis'
http://edamontology.org/operation_3083
Pathway or network visualisation
'Pathway or network visualisation' SubClassOf 'Pathway or network processing'
'Pathway or network visualisation' SubClassOf 'Pathway or network analysis'
http://edamontology.org/operation_3084
Protein function prediction (from sequence)
'Protein function prediction (from sequence)' SubClassOf 'Obsolete concept (EDAM)'
'Protein function prediction (from sequence)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2470
Data retrieval (protein family annotation)
'Data retrieval (protein family annotation)' SubClassOf 'Obsolete concept (EDAM)'
'Data retrieval (protein family annotation)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2471
Data retrieval (RNA family annotation)
'Data retrieval (RNA family annotation)' SubClassOf 'Obsolete concept (EDAM)'
'Data retrieval (RNA family annotation)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2472
Data retrieval (gene annotation)
'Data retrieval (gene annotation)' SubClassOf 'Obsolete concept (EDAM)'
'Data retrieval (gene annotation)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2473
Data retrieval (genotype and phenotype annotation)
'Data retrieval (genotype and phenotype annotation)' SubClassOf 'Obsolete concept (EDAM)'
'Data retrieval (genotype and phenotype annotation)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_3090
Protein feature prediction (from structure)
'Protein feature prediction (from structure)' SubClassOf 'Obsolete concept (EDAM)'
'Protein feature prediction (from structure)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_3093
Database search (by sequence)
'Database search (by sequence)' SubClassOf 'Obsolete concept (EDAM)'
'Database search (by sequence)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_1847
DSSP secondary structure assignment
'DSSP secondary structure assignment' SubClassOf 'Obsolete concept (EDAM)'
'DSSP secondary structure assignment' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_1848
Structure formatting
'Structure formatting' SubClassOf 'Formatting'
'Structure formatting' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2468
Data retrieval (phylogenetic tree)
'Data retrieval (phylogenetic tree)' SubClassOf 'Obsolete concept (EDAM)'
'Data retrieval (phylogenetic tree)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2469
Data retrieval (protein interaction annotation)
'Data retrieval (protein interaction annotation)' SubClassOf 'Obsolete concept (EDAM)'
'Data retrieval (protein interaction annotation)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2466
Map annotation
'Map annotation' SubClassOf 'Obsolete concept (EDAM)'
'Map annotation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2467
Data retrieval (protein annotation)
'Data retrieval (protein annotation)' SubClassOf 'Obsolete concept (EDAM)'
'Data retrieval (protein annotation)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2460
Protein atom surface calculation
'Protein atom surface calculation' SubClassOf 'Protein surface and interior calculation'
'Protein atom surface calculation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3086
Nucleic acid sequence composition (report)
'Nucleic acid sequence composition (report)' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid sequence composition (report)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2461
Protein residue surface calculation
'Protein residue surface calculation' SubClassOf 'Protein surface and interior calculation'
'Protein residue surface calculation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3085
Protein sequence composition
'Protein sequence composition' SubClassOf 'Obsolete concept (EDAM)'
'Protein sequence composition' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2464
Protein-protein interaction prediction
'Protein-protein interaction prediction' SubClassOf 'Protein function prediction'
http://edamontology.org/operation_2465
Structure processing
'Structure processing' SubClassOf 'Obsolete concept (EDAM)'
'Structure processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2462
Protein surface calculation
'Protein surface calculation' SubClassOf 'Protein surface and interior calculation'
'Protein surface calculation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2463
Sequence alignment processing
'Sequence alignment processing' SubClassOf 'Obsolete concept (EDAM)'
'Sequence alignment processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2453
Feature table processing
'Feature table processing' SubClassOf 'Obsolete concept (EDAM)'
'Feature table processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2452
Sequence cluster processing
'Sequence cluster processing' SubClassOf 'Obsolete concept (EDAM)'
'Sequence cluster processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2451
Sequence comparison
'Sequence comparison' SubClassOf 'has topic' some 'Sequence comparison'
http://edamontology.org/operation_0385
Protein hydropathy cluster calculation
'Protein hydropathy cluster calculation' SubClassOf 'Protein hydropathy calculation (from structure)'
'Protein hydropathy cluster calculation' SubClassOf 'Protein residue cluster calculation'
'Protein hydropathy cluster calculation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0384
Protein solvent accessibility calculation
'Protein solvent accessibility calculation' SubClassOf 'Protein property calculation (from structure)'
'Protein solvent accessibility calculation' SubClassOf 'has topic' some 'Protein properties'
'Protein solvent accessibility calculation' SubClassOf 'Protein surface analysis'
http://edamontology.org/operation_0383
Protein hydropathy calculation (from structure)
'Protein hydropathy calculation (from structure)' SubClassOf 'Protein hydropathy calculation'
'Protein hydropathy calculation (from structure)' SubClassOf 'Protein property calculation (from structure)'
'Protein hydropathy calculation (from structure)' SubClassOf 'Protein structure analysis'
'Protein hydropathy calculation (from structure)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0388
Protein binding site prediction (from structure)
'Protein binding site prediction (from structure)' SubClassOf 'Protein structural motif recognition'
'Protein binding site prediction (from structure)' SubClassOf 'Protein binding site prediction'
'Protein binding site prediction (from structure)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2459
Structure processing (protein)
'Structure processing (protein)' SubClassOf 'Obsolete concept (EDAM)'
'Structure processing (protein)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0387
Protein surface and interior calculation
'Protein surface and interior calculation' SubClassOf 'has topic' some 'Protein structural motifs and surfaces'
'Protein surface and interior calculation' SubClassOf 'Protein solvent accessibility calculation'
'Protein surface and interior calculation' SubClassOf 'Protein surface analysis'
http://edamontology.org/format_3261
RDF/XML
'RDF/XML' SubClassOf 'OWL format'
http://edamontology.org/data_1536
MHC peptide immunogenicity report
'MHC peptide immunogenicity report' SubClassOf 'Obsolete concept (EDAM)'
'MHC peptide immunogenicity report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1533
Protein subcellular localization
'Protein subcellular localization' SubClassOf 'Obsolete concept (EDAM)'
'Protein subcellular localization' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_3501
Enrichment
'Enrichment' SubClassOf 'Analysis'
'Enrichment' SubClassOf 'Operation'
http://edamontology.org/operation_0391
Protein distance matrix calculation
'Protein distance matrix calculation' SubClassOf 'Residue interaction calculation'
'Protein distance matrix calculation' SubClassOf 'Residue contact calculation'
http://edamontology.org/operation_2440
Structure processing (RNA)
'Structure processing (RNA)' SubClassOf 'Obsolete concept (EDAM)'
'Structure processing (RNA)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0393
Protein residue cluster calculation
'Protein residue cluster calculation' SubClassOf 'Residue contact calculation (residue-residue)'
'Protein residue cluster calculation' SubClassOf 'Residue contact calculation'
http://edamontology.org/operation_2443
Phylogenetic tree processing
'Phylogenetic tree processing' SubClassOf 'has topic' some 'Phylogeny'
'Phylogenetic tree processing' SubClassOf 'Operation (typed)'
'Phylogenetic tree processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0392
Protein contact map calculation
'Protein contact map calculation' SubClassOf 'Residue contact calculation (residue-residue)'
'Protein contact map calculation' SubClassOf 'Protein distance matrix calculation'
http://edamontology.org/operation_0395
Residue non-canonical interaction detection
'Residue non-canonical interaction detection' SubClassOf 'Protein model validation'
'Residue non-canonical interaction detection' SubClassOf 'Residue interaction calculation'
'Residue non-canonical interaction detection' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2448
Sequence processing (nucleic acid)
'Sequence processing (nucleic acid)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence processing (nucleic acid)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2445
Protein interaction network processing
'Protein interaction network processing' SubClassOf 'Obsolete concept (EDAM)'
'Protein interaction network processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2444
Protein secondary structure processing
'Protein secondary structure processing' SubClassOf 'Obsolete concept (EDAM)'
'Protein secondary structure processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2447
Sequence processing (protein)
'Sequence processing (protein)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence processing (protein)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2446
Sequence processing
'Sequence processing' SubClassOf 'Obsolete concept (EDAM)'
'Sequence processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1549
Protein hydrogen bonds
'Protein hydrogen bonds' SubClassOf 'Protein residue interactions'
'Protein hydrogen bonds' SubClassOf 'Protein interaction report'
http://edamontology.org/data_1546
Protein distance matrix
'Protein distance matrix' SubClassOf 'Protein residue interactions'
'Protein distance matrix' SubClassOf 'Protein interaction report'
'Protein distance matrix' SubClassOf 'Distance matrix'
http://edamontology.org/data_1548
Protein residue 3D cluster
'Protein residue 3D cluster' SubClassOf 'Protein residue interactions'
'Protein residue 3D cluster' SubClassOf 'Protein interaction report'
http://edamontology.org/data_1547
Protein contact map
'Protein contact map' SubClassOf 'Protein residue interactions'
'Protein contact map' SubClassOf 'Protein interaction report'
http://edamontology.org/data_1542
Protein solvent accessibility
'Protein solvent accessibility' SubClassOf 'Protein residue interactions'
'Protein solvent accessibility' SubClassOf 'Protein structure report'
http://edamontology.org/data_1541
Protein flexibility or motion report
'Protein flexibility or motion report' SubClassOf 'Obsolete concept (EDAM)'
'Protein flexibility or motion report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1543
Protein surface report
'Protein surface report' SubClassOf 'Obsolete concept (EDAM)'
'Protein surface report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1540
Protein residue interactions
'Protein residue interactions' SubClassOf 'Protein property'
'Protein residue interactions' SubClassOf 'has topic' some 'Protein folding, stability and design'
'Protein residue interactions' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2432
Microarray data processing
'Microarray data processing' SubClassOf 'Obsolete concept (EDAM)'
'Microarray data processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0360
Structural similarity search
'Structural similarity search' SubClassOf 'has topic' some 'Structure comparison'
http://edamontology.org/operation_2430
Design
'Design' SubClassOf 'Analysis'
'Design' SubClassOf 'Operation'
http://edamontology.org/operation_2435
Gene expression profile processing
'Gene expression profile processing' SubClassOf 'Obsolete concept (EDAM)'
'Gene expression profile processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2434
Data retrieval (codon usage table)
'Data retrieval (codon usage table)' SubClassOf 'Obsolete concept (EDAM)'
'Data retrieval (codon usage table)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2438
Pathway or network processing
'Pathway or network processing' SubClassOf 'has topic' some 'Molecular interactions, pathways and networks'
'Pathway or network processing' SubClassOf 'Operation (typed)'
'Pathway or network processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2437
Gene regulatory network prediction
'Gene regulatory network prediction' SubClassOf 'has topic' some 'Gene regulatory networks'
'Gene regulatory network prediction' SubClassOf 'has topic' some 'Molecular interactions, pathways and networks'
http://edamontology.org/data_1559
CATH homologous superfamily
'CATH homologous superfamily' SubClassOf 'Obsolete concept (EDAM)'
'CATH homologous superfamily' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1558
CATH topology
'CATH topology' SubClassOf 'Obsolete concept (EDAM)'
'CATH topology' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1557
CATH architecture
'CATH architecture' SubClassOf 'Obsolete concept (EDAM)'
'CATH architecture' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1556
CATH class
'CATH class' SubClassOf 'Obsolete concept (EDAM)'
'CATH class' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1555
EMBASSY domain classification
'EMBASSY domain classification' SubClassOf 'Obsolete concept (EDAM)'
'EMBASSY domain classification' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1554
SCOP node
'SCOP node' SubClassOf 'Obsolete concept (EDAM)'
'SCOP node' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1553
CATH node
'CATH node' SubClassOf 'Obsolete concept (EDAM)'
'CATH node' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1550
Protein non-canonical interactions
'Protein non-canonical interactions' SubClassOf 'Obsolete concept (EDAM)'
'Protein non-canonical interactions' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2420
Operation (typed)
'Operation (typed)' SubClassOf 'Operation'
'Operation (typed)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2423
Prediction and recognition
'Prediction and recognition' SubClassOf 'Analysis'
'Prediction and recognition' SubClassOf 'Operation'
http://edamontology.org/operation_2425
Optimisation and refinement
'Optimisation and refinement' SubClassOf 'Analysis'
'Optimisation and refinement' SubClassOf 'Operation'
http://edamontology.org/operation_2424
Comparison
'Comparison' SubClassOf 'Analysis'
'Comparison' SubClassOf 'Operation'
http://edamontology.org/operation_2427
Data handling
'Data handling' SubClassOf 'Obsolete concept (EDAM)'
'Data handling' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0377
Sequence composition calculation (nucleic acid)
'Sequence composition calculation (nucleic acid)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence composition calculation (nucleic acid)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2426
Modelling and simulation
'Modelling and simulation' SubClassOf 'Analysis'
'Modelling and simulation' SubClassOf 'Operation'
http://edamontology.org/operation_2429
Mapping
'Mapping' SubClassOf 'Analysis'
'Mapping' SubClassOf 'Operation'
http://edamontology.org/operation_0378
Sequence composition calculation (protein)
'Sequence composition calculation (protein)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence composition calculation (protein)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2428
Validation
'Validation' SubClassOf 'Analysis'
'Validation' SubClassOf 'Operation'
http://edamontology.org/data_2381
Experiment report (genotyping)
'Experiment report (genotyping)' SubClassOf 'Obsolete concept (EDAM)'
'Experiment report (genotyping)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2409
Utility operation
'Utility operation' SubClassOf 'has topic' some 'File management'
'Utility operation' SubClassOf 'has topic' some 'Biological databases'
http://edamontology.org/operation_2408
Sequence feature analysis
'Sequence feature analysis' SubClassOf 'Obsolete concept (EDAM)'
'Sequence feature analysis' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2417
Physicochemical property data processing
'Physicochemical property data processing' SubClassOf 'Obsolete concept (EDAM)'
'Physicochemical property data processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0345
Sequence retrieval (by keyword)
'Sequence retrieval (by keyword)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence retrieval (by keyword)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0343
Transmembrane protein database search
'Transmembrane protein database search' SubClassOf 'Obsolete concept (EDAM)'
'Transmembrane protein database search' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0344
Sequence retrieval (by code)
'Sequence retrieval (by code)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence retrieval (by code)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2413
Sequence profile processing
'Sequence profile processing' SubClassOf 'Obsolete concept (EDAM)'
'Sequence profile processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2411
Structural profile processing
'Structural profile processing' SubClassOf 'Obsolete concept (EDAM)'
'Structural profile processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0347
Sequence database search (by motif or pattern)
'Sequence database search (by motif or pattern)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence database search (by motif or pattern)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2412
Data index processing
'Data index processing' SubClassOf 'Obsolete concept (EDAM)'
'Data index processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0348
Sequence database search (by amino acid composition)
'Sequence database search (by amino acid composition)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence database search (by amino acid composition)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2410
Gene expression analysis
'Gene expression analysis' SubClassOf 'Obsolete concept (EDAM)'
'Gene expression analysis' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0341
Motif database search
'Motif database search' SubClassOf 'Obsolete concept (EDAM)'
'Motif database search' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0342
Sequence profile database search
'Sequence profile database search' SubClassOf 'Obsolete concept (EDAM)'
'Sequence profile database search' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0340
Protein secondary database search
'Protein secondary database search' SubClassOf 'Obsolete concept (EDAM)'
'Protein secondary database search' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_3545
Mathematical modelling
'Mathematical modelling' SubClassOf 'Modelling and simulation'
'Mathematical modelling' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2788
Sequence profile data
'Sequence profile data' SubClassOf 'Obsolete concept (EDAM)'
'Sequence profile data' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2372
2D PAGE spot report
'2D PAGE spot report' SubClassOf 'Obsolete concept (EDAM)'
'2D PAGE spot report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2404
Sequence motif processing
'Sequence motif processing' SubClassOf 'Obsolete concept (EDAM)'
'Sequence motif processing' SubClassOf 'Sequence analysis'
http://edamontology.org/operation_0354
Sequence database search (by sequence for primer sequences)
'Sequence database search (by sequence for primer sequences)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence database search (by sequence for primer sequences)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2405
Protein interaction data processing
'Protein interaction data processing' SubClassOf 'Obsolete concept (EDAM)'
'Protein interaction data processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0355
Sequence database search (by molecular weight)
'Sequence database search (by molecular weight)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence database search (by molecular weight)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0356
Sequence database search (by isoelectric point)
'Sequence database search (by isoelectric point)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence database search (by isoelectric point)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2407
Annotation processing
'Annotation processing' SubClassOf 'Obsolete concept (EDAM)'
'Annotation processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0357
Structure retrieval (by code)
'Structure retrieval (by code)' SubClassOf 'Obsolete concept (EDAM)'
'Structure retrieval (by code)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0358
Structure retrieval (by keyword)
'Structure retrieval (by keyword)' SubClassOf 'Obsolete concept (EDAM)'
'Structure retrieval (by keyword)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0359
Structure database search (by sequence)
'Structure database search (by sequence)' SubClassOf 'Obsolete concept (EDAM)'
'Structure database search (by sequence)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2403
Sequence analysis
'Sequence analysis' SubClassOf 'Operation (typed)'
'Sequence analysis' SubClassOf 'Analysis'
http://edamontology.org/data_2378
Protein-motif interaction
'Protein-motif interaction' SubClassOf 'Obsolete concept (EDAM)'
'Protein-motif interaction' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3427
RNAi report
'RNAi report' SubClassOf 'Obsolete concept (EDAM)'
'RNAi report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3426
Proteomics experiment report
'Proteomics experiment report' SubClassOf 'Obsolete concept (EDAM)'
'Proteomics experiment report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3428
Simulation experiment report
'Simulation experiment report' SubClassOf 'Obsolete concept (EDAM)'
'Simulation experiment report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0350
Sequence database search (by sequence using word-based methods)
'Sequence database search (by sequence using word-based methods)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence database search (by sequence using word-based methods)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0351
Sequence database search (by sequence using profile-based methods)
'Sequence database search (by sequence using profile-based methods)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence database search (by sequence using profile-based methods)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0352
Sequence database search (by sequence using local alignment-based methods)
'Sequence database search (by sequence using local alignment-based methods)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence database search (by sequence using local alignment-based methods)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0353
Sequence database search (by sequence using global alignment-based methods)
'Sequence database search (by sequence using global alignment-based methods)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence database search (by sequence using global alignment-based methods)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0318
Structural genomics target selection
'Structural genomics target selection' SubClassOf 'Obsolete concept (EDAM)'
'Structural genomics target selection' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0325
Phylogenetic tree comparison
'Phylogenetic tree comparison' SubClassOf 'Phylogenetic tree processing'
'Phylogenetic tree comparison' SubClassOf 'Phylogenetic tree analysis'
http://edamontology.org/operation_0326
Phylogenetic tree editing
'Phylogenetic tree editing' SubClassOf 'Phylogenetic tree processing'
'Phylogenetic tree editing' SubClassOf 'Phylogenetic tree analysis'
http://edamontology.org/operation_0323
Phylogenetic tree generation
'Phylogenetic tree generation' SubClassOf 'Phylogenetic tree processing'
'Phylogenetic tree generation' SubClassOf 'Phylogenetic tree analysis'
http://edamontology.org/operation_0324
Phylogenetic tree analysis
'Phylogenetic tree analysis' SubClassOf 'has output' some 'Phylogenetic data'
'Phylogenetic tree analysis' SubClassOf 'Phylogenetic tree processing'
'Phylogenetic tree analysis' SubClassOf 'has input' some 'Phylogenetic tree'
'Phylogenetic tree analysis' SubClassOf 'has topic' some 'Phylogeny'
'Phylogenetic tree analysis' SubClassOf 'Analysis'
http://edamontology.org/operation_0321
Protein model validation
'Protein model validation' SubClassOf 'has topic' some 'Protein structure prediction'
http://edamontology.org/data_1517
Restriction enzyme report
'Restriction enzyme report' SubClassOf 'Obsolete concept (EDAM)'
'Restriction enzyme report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0336
Format validation
'Format validation' SubClassOf 'Utility operation'
http://edamontology.org/operation_0338
Sequence database search
'Sequence database search' SubClassOf 'has topic' some 'Sequence comparison'
http://edamontology.org/data_2399
Gene transcriptional features report
'Gene transcriptional features report' SubClassOf 'Obsolete concept (EDAM)'
'Gene transcriptional features report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0332
Immunogen design
'Immunogen design' SubClassOf 'Obsolete concept (EDAM)'
'Immunogen design' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2397
Gene features report (exon)
'Gene features report (exon)' SubClassOf 'Obsolete concept (EDAM)'
'Gene features report (exon)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2395
Fungi annotation
'Fungi annotation' SubClassOf 'Obsolete concept (EDAM)'
'Fungi annotation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1509
Enzyme report
'Enzyme report' SubClassOf 'Obsolete concept (EDAM)'
'Enzyme report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2396
Fungi annotation (anamorph)
'Fungi annotation (anamorph)' SubClassOf 'Obsolete concept (EDAM)'
'Fungi annotation (anamorph)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0330
Protein SNP mapping
'Protein SNP mapping' SubClassOf 'Mapping'
'Protein SNP mapping' SubClassOf 'Protein modelling (mutation)'
'Protein SNP mapping' SubClassOf 'has topic' some 'SNP'
'Protein SNP mapping' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_2230
Classification
'Classification' SubClassOf 'Obsolete concept (EDAM)'
'Classification' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1890
Gene name (Arabidopsis)
'Gene name (Arabidopsis)' SubClassOf 'Obsolete concept (EDAM)'
'Gene name (Arabidopsis)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0410
Protein crystallizability prediction
'Protein crystallizability prediction' SubClassOf 'Protein hydropathy calculation (from sequence)'
'Protein crystallizability prediction' SubClassOf 'Protein hydropathy calculation'
http://edamontology.org/data_1892
Gene name (GeneFarm)
'Gene name (GeneFarm)' SubClassOf 'Obsolete concept (EDAM)'
'Gene name (GeneFarm)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0414
Protein feature prediction (from sequence)
'Protein feature prediction (from sequence)' SubClassOf 'Obsolete concept (EDAM)'
'Protein feature prediction (from sequence)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_2232
Lipoproteins
'Lipoproteins' SubClassOf 'Obsolete concept (EDAM)'
'Lipoproteins' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0413
MHC peptide immunogenicity prediction
'MHC peptide immunogenicity prediction' SubClassOf 'Peptide immunogenicity prediction'
'MHC peptide immunogenicity prediction' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2880
Secondary structure image
'Secondary structure image' SubClassOf 'Obsolete concept (EDAM)'
'Secondary structure image' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2881
Secondary structure report
'Secondary structure report' SubClassOf 'Obsolete concept (EDAM)'
'Secondary structure report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2882
DNA features
'DNA features' SubClassOf 'Obsolete concept (EDAM)'
'DNA features' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2883
RNA features report
'RNA features report' SubClassOf 'Obsolete concept (EDAM)'
'RNA features report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2885
Nucleic acid features report (polymorphism)
'Nucleic acid features report (polymorphism)' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid features report (polymorphism)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0408
Protein globularity prediction
'Protein globularity prediction' SubClassOf 'Protein hydropathy calculation (from sequence)'
'Protein globularity prediction' SubClassOf 'Protein hydropathy calculation'
http://edamontology.org/operation_0409
Protein solubility prediction
'Protein solubility prediction' SubClassOf 'Protein hydropathy calculation (from sequence)'
'Protein solubility prediction' SubClassOf 'Protein hydropathy calculation'
http://edamontology.org/data_2888
Protein sequence record (full)
'Protein sequence record (full)' SubClassOf 'Obsolete concept (EDAM)'
'Protein sequence record (full)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0406
Protein aliphatic index calculation
'Protein aliphatic index calculation' SubClassOf 'Protein hydropathy calculation (from sequence)'
'Protein aliphatic index calculation' SubClassOf 'Protein hydropathy calculation'
http://edamontology.org/data_2889
Nucleic acid sequence record (full)
'Nucleic acid sequence record (full) ' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid sequence record (full) ' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0407
Protein hydrophobic moment plotting
'Protein hydrophobic moment plotting' SubClassOf 'Protein hydropathy calculation (from sequence)'
'Protein hydrophobic moment plotting' SubClassOf 'Protein hydropathy calculation'
http://edamontology.org/data_1880
Misnomer
'Misnomer' SubClassOf 'Obsolete concept (EDAM)'
'Misnomer' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0401
Protein hydropathy calculation (from sequence)
'Protein hydropathy calculation (from sequence)' SubClassOf 'Protein hydropathy calculation'
'Protein hydropathy calculation (from sequence)' SubClassOf 'Protein sequence analysis'
'Protein hydropathy calculation (from sequence)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1884
UniProt keywords
'UniProt keywords' SubClassOf 'Obsolete concept (EDAM)'
'UniProt keywords' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0405
Protein hydrophobic region calculation
'Protein hydrophobic region calculation' SubClassOf 'Protein hydropathy calculation (from sequence)'
'Protein hydrophobic region calculation' SubClassOf 'Protein hydropathy calculation'
http://edamontology.org/data_1888
Gene ID (MIPS Medicago)
'Gene ID (MIPS Medicago)' SubClassOf 'Obsolete concept (EDAM)'
'Gene ID (MIPS Medicago)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1889
Gene name (DragonDB)
'Gene name (DragonDB)' SubClassOf 'Obsolete concept (EDAM)'
'Gene name (DragonDB)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1887
Gene ID (MIPS Maize)
'Gene ID (MIPS Maize)' SubClassOf 'Obsolete concept (EDAM)'
'Gene ID (MIPS Maize)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_2243
phylip property values
'phylip property values' SubClassOf 'Obsolete concept (EDAM)'
'phylip property values' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2874
Sequence set (polymorphic)
'Sequence set (polymorphic)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence set (polymorphic)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2875
DRCAT resource
'DRCAT resource' SubClassOf 'Obsolete concept (EDAM)'
'DRCAT resource' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_2225
Protein databases
'Protein databases' SubClassOf 'Obsolete concept (EDAM)'
'Protein databases' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_2226
Structure determination
'Structure determination' SubClassOf 'Obsolete concept (EDAM)'
'Structure determination' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0438
Regulatory element prediction
'Regulatory element prediction' SubClassOf 'Gene component prediction'
'Regulatory element prediction' SubClassOf 'Gene prediction'
http://edamontology.org/operation_0437
Selenocysteine insertion sequence (SECIS) prediction
'Selenocysteine insertion sequence (SECIS) prediction' SubClassOf 'Gene component prediction'
'Selenocysteine insertion sequence (SECIS) prediction' SubClassOf 'Gene prediction'
http://edamontology.org/operation_0436
Coding region prediction
'Coding region prediction' SubClassOf 'Gene component prediction'
'Coding region prediction' SubClassOf 'Gene prediction'
http://edamontology.org/operation_0435
Operon prediction
'Operon prediction' SubClassOf 'Whole gene prediction'
'Operon prediction' SubClassOf 'Gene prediction'
http://edamontology.org/operation_0434
Integrated gene prediction
'Integrated gene prediction' SubClassOf 'Whole gene prediction'
'Integrated gene prediction' SubClassOf 'Gene prediction'
http://edamontology.org/data_1490
Multiple protein tertiary structure alignment (C-alpha atoms)
'Multiple protein tertiary structure alignment (C-alpha atoms)' SubClassOf 'Obsolete concept (EDAM)'
'Multiple protein tertiary structure alignment (C-alpha atoms)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1491
Structure alignment (nucleic acid pair)
'Structure alignment (nucleic acid pair)' SubClassOf 'Structure alignment (pair)'
'Structure alignment (nucleic acid pair)' SubClassOf 'Structure alignment (nucleic acid)'
'Structure alignment (nucleic acid pair)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1492
Multiple nucleic acid tertiary structure alignment
'Multiple nucleic acid tertiary structure alignment' SubClassOf 'Obsolete concept (EDAM)'
'Multiple nucleic acid tertiary structure alignment' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_2754
Introns
'Introns' SubClassOf 'Gene transcript features'
'Introns' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1496
Molecular similarity score
'Molecular similarity score' SubClassOf 'Obsolete concept (EDAM)'
'Molecular similarity score' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1495
DaliLite hit table
'DaliLite hit table' SubClassOf 'Obsolete concept (EDAM)'
'DaliLite hit table' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2869
Nucleic acid features report (RFLP)
'Nucleic acid features report (RFLP)' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid features report (RFLP)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2866
Northern blot report
'Northern blot report' SubClassOf 'Obsolete concept (EDAM)'
'Northern blot report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2867
Nucleic acid features report (VNTR)
'Nucleic acid features report (VNTR)' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid features report (VNTR)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0429
Quadruplex formation site detection
'Quadruplex formation site detection' SubClassOf 'has topic' some 'Nucleic acid structure prediction'
http://edamontology.org/data_2868
Nucleic acid features report (microsatellite)
'Nucleic acid features report (microsatellite)' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid features report (microsatellite)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0425
Whole gene prediction
'Whole gene prediction' SubClassOf 'Gene prediction'
'Whole gene prediction' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0424
Epitope mapping (MHC Class II)
'Epitope mapping (MHC Class II)' SubClassOf 'Obsolete concept (EDAM)'
'Epitope mapping (MHC Class II)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0426
Gene component prediction
'Gene component prediction' SubClassOf 'Gene prediction'
'Gene component prediction' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1099
UniProt accession (extended)
'UniProt accession (extended)' SubClassOf 'Obsolete concept (EDAM)'
'UniProt accession (extended)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0420
Protein-nucleic acid binding prediction
'Protein-nucleic acid binding prediction' SubClassOf 'Protein binding site prediction (from sequence)'
'Protein-nucleic acid binding prediction' SubClassOf 'Protein binding site prediction'
http://edamontology.org/operation_0423
Epitope mapping (MHC Class I)
'Epitope mapping (MHC Class I)' SubClassOf 'Obsolete concept (EDAM)'
'Epitope mapping (MHC Class I)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1480
Structure alignment (multiple)
'Structure alignment (multiple)' SubClassOf 'Obsolete concept (EDAM)'
'Structure alignment (multiple)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3346
Sequence search
'Sequence search' SubClassOf 'Sequence analysis'
'Sequence search' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3344
Biomedical science
'Biomedical science' SubClassOf 'Biology'
'Biomedical science' SubClassOf 'Medicine'
'Biomedical science' SubClassOf 'Topic'
http://edamontology.org/data_1489
Multiple protein tertiary structure alignment (all atoms)
'Multiple protein tertiary structure alignment (all atoms)' SubClassOf 'Obsolete concept (EDAM)'
'Multiple protein tertiary structure alignment (all atoms)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1488
Pairwise protein tertiary structure alignment (C-alpha atoms)
'Pairwise protein tertiary structure alignment (C-alpha atoms)' SubClassOf 'Obsolete concept (EDAM)'
'Pairwise protein tertiary structure alignment (C-alpha atoms)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1487
Pairwise protein tertiary structure alignment (all atoms)
'Pairwise protein tertiary structure alignment (all atoms)' SubClassOf 'Obsolete concept (EDAM)'
'Pairwise protein tertiary structure alignment (all atoms)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1486
Structure alignment (protein C-alpha atoms)
'Structure alignment (protein C-alpha atoms)' SubClassOf 'Obsolete concept (EDAM)'
'Structure alignment (protein C-alpha atoms)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1485
Structure alignment (protein all atoms)
'Structure alignment (protein all atoms)' SubClassOf 'Obsolete concept (EDAM)'
'Structure alignment (protein all atoms)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1484
Multiple protein tertiary structure alignment
'Multiple protein tertiary structure alignment' SubClassOf 'Obsolete concept (EDAM)'
'Multiple protein tertiary structure alignment' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1483
Structure alignment (protein pair)
'Structure alignment (protein pair)' SubClassOf 'Structure alignment (protein)'
'Structure alignment (protein pair)' SubClassOf 'Structure alignment (pair)'
'Structure alignment (protein pair)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1094
Sequence type
'Sequence type' SubClassOf 'Obsolete concept (EDAM)'
'Sequence type' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2857
Article metadata
'Article metadata' SubClassOf 'Obsolete concept (EDAM)'
'Article metadata' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0419
Protein binding site prediction (from sequence)
'Protein binding site prediction (from sequence)' SubClassOf 'Protein sequence feature detection'
'Protein binding site prediction (from sequence)' SubClassOf 'Protein binding site prediction'
'Protein binding site prediction (from sequence)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1853
Chromosome annotation (aberration)
'Chromosome annotation (aberration)' SubClassOf 'Obsolete concept (EDAM)'
'Chromosome annotation (aberration)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_2210
Strain data format
'Strain data format' SubClassOf 'Obsolete concept (EDAM)'
'Strain data format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_2211
CIP strain data format
'CIP strain data format' SubClassOf 'Obsolete concept (EDAM)'
'CIP strain data format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1065
Sequence signature identifier
'Sequence signature identifier' SubClassOf 'Obsolete concept (EDAM)'
'Sequence signature identifier' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1067
Phylogenetic distance matrix identifier
'Phylogenetic distance matrix identifier' SubClassOf 'Obsolete concept (EDAM)'
'Phylogenetic distance matrix identifier' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_2271
Structure database search
'Structure database search' SubClassOf 'Obsolete concept (EDAM)'
'Structure database search' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_2278
Transmembrane protein prediction
'Transmembrane protein prediction' SubClassOf 'Obsolete concept (EDAM)'
'Transmembrane protein prediction' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_2277
SNP
'SNP' SubClassOf 'DNA polymorphism'
'SNP' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_2276
Protein function prediction
'Protein function prediction' SubClassOf 'Obsolete concept (EDAM)'
'Protein function prediction' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1852
Sequence assembly component
'Sequence assembly component' SubClassOf 'Obsolete concept (EDAM)'
'Sequence assembly component' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1062
Database entry identifier
'Database entry identifier' SubClassOf 'Obsolete concept (EDAM)'
'Database entry identifier' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1471
Protein chain (all atoms)
'Protein chain (all atoms)' SubClassOf 'Obsolete concept (EDAM)'
'Protein chain (all atoms)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1472
Protein chain (C-alpha atoms)
'Protein chain (C-alpha atoms)' SubClassOf 'Obsolete concept (EDAM)'
'Protein chain (C-alpha atoms)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1473
Protein domain (all atoms)
'Protein domain (all atoms)' SubClassOf 'Obsolete concept (EDAM)'
'Protein domain (all atoms)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1474
Protein domain (C-alpha atoms)
'Protein domain (C-alpha atoms)' SubClassOf 'Obsolete concept (EDAM)'
'Protein domain (C-alpha atoms)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_2202
Sequence record full format
'Sequence record full format' SubClassOf 'Obsolete concept (EDAM)'
'Sequence record full format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_2203
Sequence record lite format
'Sequence record lite format' SubClassOf 'Obsolete concept (EDAM)'
'Sequence record lite format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1604
DictyBase gene report format
'DictyBase gene report format' SubClassOf 'Obsolete concept (EDAM)'
'DictyBase gene report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1603
Ensembl gene report format
'Ensembl gene report format' SubClassOf 'Obsolete concept (EDAM)'
'Ensembl gene report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1607
EcoCyc gene report format
'EcoCyc gene report format' SubClassOf 'Obsolete concept (EDAM)'
'EcoCyc gene report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1608
FlyBase gene report format
'FlyBase gene report format' SubClassOf 'Obsolete concept (EDAM)'
'FlyBase gene report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1605
CGD gene report format
'CGD gene report format' SubClassOf 'Obsolete concept (EDAM)'
'CGD gene report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1606
DragonDB gene report format
'DragonDB gene report format' SubClassOf 'Obsolete concept (EDAM)'
'DragonDB gene report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1469
Protein structure (all atoms)
'Protein structure (all atoms)' SubClassOf 'Obsolete concept (EDAM)'
'Protein structure (all atoms)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2832
Web portal
'Web portal' SubClassOf 'Obsolete concept (EDAM)'
'Web portal' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2838
Experimental data (proteomics)
'Experimental data (proteomics)' SubClassOf 'Obsolete concept (EDAM)'
'Experimental data (proteomics)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1609
Gramene gene report format
'Gramene gene report format' SubClassOf 'Obsolete concept (EDAM)'
'Gramene gene report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3323
Metabolic disease
'Metabolic disease' SubClassOf 'Obsolete concept (EDAM)'
'Metabolic disease' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2831
Databank
'Databank' SubClassOf 'Obsolete concept (EDAM)'
'Databank' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3321
Molecular genetics
'Molecular genetics' SubClassOf 'Computational biology'
http://edamontology.org/topic_3320
RNA splicing
'RNA splicing' SubClassOf 'Molecular genetics'
'RNA splicing' SubClassOf 'Gene expression'
http://edamontology.org/data_1879
Acronym
'Acronym' SubClassOf 'Obsolete concept (EDAM)'
'Acronym' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1878
Misspelling
'Misspelling' SubClassOf 'Obsolete concept (EDAM)'
'Misspelling' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1877
Synonym
'Synonym' SubClassOf 'Obsolete concept (EDAM)'
'Synonym' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_2257
Phylogeny visualisation
'Phylogeny visualisation' SubClassOf 'Obsolete concept (EDAM)'
'Phylogeny visualisation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_2258
Cheminformatics
'Cheminformatics' SubClassOf 'Chemistry'
'Cheminformatics' SubClassOf 'Computer science'
'Cheminformatics' SubClassOf 'Informatics'
http://edamontology.org/data_1453
Amino acid comparison matrix (floats)
'Amino acid comparison matrix (floats)' SubClassOf 'Obsolete concept (EDAM)'
'Amino acid comparison matrix (floats)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1456
Protein features report (membrane regions)
'Protein features report (membrane regions)' SubClassOf 'Obsolete concept (EDAM)'
'Protein features report (membrane regions)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1450
Nucleotide comparison matrix (integers)
'Nucleotide comparison matrix (integers)' SubClassOf 'Obsolete concept (EDAM)'
'Nucleotide comparison matrix (integers)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1451
Nucleotide comparison matrix (floats)
'Nucleotide comparison matrix (floats)' SubClassOf 'Obsolete concept (EDAM)'
'Nucleotide comparison matrix (floats)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1452
Amino acid comparison matrix (integers)
'Amino acid comparison matrix (integers)' SubClassOf 'Obsolete concept (EDAM)'
'Amino acid comparison matrix (integers)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3307
Computational biology
'Computational biology' SubClassOf 'Biology'
'Computational biology' SubClassOf 'Computer science'
'Computational biology' SubClassOf 'Topic'
http://edamontology.org/data_1866
Map type
'Map type' SubClassOf 'Obsolete concept (EDAM)'
'Map type' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1865
Map feature
'Map feature' SubClassOf 'Obsolete concept (EDAM)'
'Map feature' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1057
Sequence database name
'Sequence database name' SubClassOf 'Obsolete concept (EDAM)'
'Sequence database name' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1446
Comparison matrix (integers)
'Comparison matrix (integers)' SubClassOf 'Obsolete concept (EDAM)'
'Comparison matrix (integers)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1447
Comparison matrix (floats)
'Comparison matrix (floats)' SubClassOf 'Obsolete concept (EDAM)'
'Comparison matrix (floats)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3301
Microbiology
'Microbiology' SubClassOf 'Biomedical science'
'Microbiology' SubClassOf 'Biology'
http://edamontology.org/data_1443
Phylogenetic tree report (tree stratigraphic)
'Phylogenetic tree report (tree stratigraphic)' SubClassOf 'Obsolete concept (EDAM)'
'Phylogenetic tree report (tree stratigraphic)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1440
Phylogenetic tree report (tree shape)
'Phylogenetic tree report (tree shape)' SubClassOf 'Obsolete concept (EDAM)'
'Phylogenetic tree report (tree shape)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1441
Phylogenetic tree report (tree evaluation)
'Phylogenetic tree report (tree evaluation)' SubClassOf 'Obsolete concept (EDAM)'
'Phylogenetic tree report (tree evaluation)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1806
Gene synonym
'Gene synonym' SubClassOf 'Obsolete concept (EDAM)'
'Gene synonym' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1022
Sequence feature label
'Sequence feature label' SubClassOf 'Sequence feature identifier'
'Sequence feature label' SubClassOf 'Name'
http://edamontology.org/data_1024
Codon name
'Codon name' SubClassOf 'Obsolete concept (EDAM)'
'Codon name' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1028
Gene identifier (NCBI RefSeq)
'Gene identifier (NCBI RefSeq)' SubClassOf 'Obsolete concept (EDAM)'
'Gene identifier (NCBI RefSeq)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1029
Gene identifier (NCBI UniGene)
'Gene identifier (NCBI UniGene)' SubClassOf 'Obsolete concept (EDAM)'
'Gene identifier (NCBI UniGene)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1649
HumanCyc entry format
'HumanCyc entry format' SubClassOf 'Obsolete concept (EDAM)'
'HumanCyc entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1030
Gene identifier (Entrez)
'Gene identifier (Entrez)' SubClassOf 'Obsolete concept (EDAM)'
'Gene identifier (Entrez)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1513
KEGG REACTION enzyme report format
'KEGG REACTION enzyme report format' SubClassOf 'Obsolete concept (EDAM)'
'KEGG REACTION enzyme report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1514
KEGG ENZYME enzyme report format
'KEGG ENZYME enzyme report format' SubClassOf 'Obsolete concept (EDAM)'
'KEGG ENZYME enzyme report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1515
REBASE proto enzyme report format
'REBASE proto enzyme report format' SubClassOf 'Obsolete concept (EDAM)'
'REBASE proto enzyme report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1516
REBASE withrefm enzyme report format
'REBASE withrefm enzyme report format' SubClassOf 'Obsolete concept (EDAM)'
'REBASE withrefm enzyme report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1645
EMDB entry format
'EMDB entry format' SubClassOf 'Obsolete concept (EDAM)'
'EMDB entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2400
Toxin annotation
'Toxin annotation' SubClassOf 'Obsolete concept (EDAM)'
'Toxin annotation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1647
KEGG PATHWAY entry format
'KEGG PATHWAY entry format' SubClassOf 'Obsolete concept (EDAM)'
'KEGG PATHWAY entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1511
IntEnz enzyme report format
'IntEnz enzyme report format' SubClassOf 'Obsolete concept (EDAM)'
'IntEnz enzyme report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2402
Protein-drug interaction report
'Protein-drug interaction report' SubClassOf 'Protein structure report'
'Protein-drug interaction report' SubClassOf 'Protein-ligand interaction report'
'Protein-drug interaction report' SubClassOf 'Drug report'
'Protein-drug interaction report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1648
MetaCyc entry format
'MetaCyc entry format' SubClassOf 'Obsolete concept (EDAM)'
'MetaCyc entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1512
BRENDA enzyme report format
'BRENDA enzyme report format' SubClassOf 'Obsolete concept (EDAM)'
'BRENDA enzyme report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2401
Protein report (membrane protein)
'Protein report (membrane protein)' SubClassOf 'Obsolete concept (EDAM)'
'Protein report (membrane protein)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1800
Gene ID (GeneDB Schizosaccharomyces pombe)
'Gene ID (GeneDB Schizosaccharomyces pombe)' SubClassOf 'Obsolete concept (EDAM)'
'Gene ID (GeneDB Schizosaccharomyces pombe)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1801
Gene ID (GeneDB Trypanosoma brucei)
'Gene ID (GeneDB Trypanosoma brucei)' SubClassOf 'Obsolete concept (EDAM)'
'Gene ID (GeneDB Trypanosoma brucei)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1640
ArrayExpress entry format
'ArrayExpress entry format' SubClassOf 'Obsolete concept (EDAM)'
'ArrayExpress entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3026
GO concept name (biological process)
'GO concept name (biological process)' SubClassOf 'Obsolete concept (EDAM)'
'GO concept name (biological process)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3027
GO concept name (molecular function)
'GO concept name (molecular function)' SubClassOf 'Obsolete concept (EDAM)'
'GO concept name (molecular function)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1619
TIGR gene report format
'TIGR gene report format' SubClassOf 'Obsolete concept (EDAM)'
'TIGR gene report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1618
ZFIN gene report format
'ZFIN gene report format' SubClassOf 'Obsolete concept (EDAM)'
'ZFIN gene report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1617
WormBase gene report format
'WormBase gene report format' SubClassOf 'Obsolete concept (EDAM)'
'WormBase gene report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1616
TAIR gene report format
'TAIR gene report format' SubClassOf 'Obsolete concept (EDAM)'
'TAIR gene report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1614
SGD gene report format
'SGD gene report format' SubClassOf 'Obsolete concept (EDAM)'
'SGD gene report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1500
Domainatrix 3D-1D scoring matrix format
'Domainatrix 3D-1D scoring matrix format' SubClassOf 'Obsolete concept (EDAM)'
'Domainatrix 3D-1D scoring matrix format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1615
GeneDB gene report format
'GeneDB gene report format' SubClassOf 'Obsolete concept (EDAM)'
'GeneDB gene report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1612
MGD gene report format
'MGD gene report format' SubClassOf 'Obsolete concept (EDAM)'
'MGD gene report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1613
RGD gene report format
'RGD gene report format' SubClassOf 'Obsolete concept (EDAM)'
'RGD gene report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1610
KEGG GENES gene report format
'KEGG GENES gene report format' SubClassOf 'Obsolete concept (EDAM)'
'KEGG GENES gene report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1611
MaizeGDB gene report format
'MaizeGDB gene report format' SubClassOf 'Obsolete concept (EDAM)'
'MaizeGDB gene report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1623
OMIM entry format
'OMIM entry format' SubClassOf 'Obsolete concept (EDAM)'
'OMIM entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1624
HGVbase entry format
'HGVbase entry format' SubClassOf 'Obsolete concept (EDAM)'
'HGVbase entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1014
Sequence position specification
'Sequence position specification' SubClassOf 'Obsolete concept (EDAM)'
'Sequence position specification' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1625
HIVDB entry format
'HIVDB entry format' SubClassOf 'Obsolete concept (EDAM)'
'HIVDB entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1626
KEGG DISEASE entry format
'KEGG DISEASE entry format' SubClassOf 'Obsolete concept (EDAM)'
'KEGG DISEASE entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1620
dbSNP polymorphism report format
'dbSNP polymorphism report format' SubClassOf 'Obsolete concept (EDAM)'
'dbSNP polymorphism report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_2280
Nucleic acid structure comparison
'Nucleic acid structure comparison' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid structure comparison' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3031
Core data
'Core data' SubClassOf 'Obsolete concept (EDAM)'
'Core data' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1018
Nucleic acid feature identifier
'Nucleic acid feature identifier' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid feature identifier' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1019
Protein feature identifier
'Protein feature identifier' SubClassOf 'Obsolete concept (EDAM)'
'Protein feature identifier' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3391
Omics
'Omics' SubClassOf 'Biology'
'Omics' SubClassOf 'Topic'
http://edamontology.org/format_1563
SMART domain assignment report format
'SMART domain assignment report format' SubClassOf 'Obsolete concept (EDAM)'
'SMART domain assignment report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1569
IntAct entry format
'IntAct entry format' SubClassOf 'Obsolete concept (EDAM)'
'IntAct entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1568
BIND entry format
'BIND entry format' SubClassOf 'Obsolete concept (EDAM)'
'BIND entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0821
Enzymes
'Enzymes' SubClassOf 'Protein families'
'Enzymes' SubClassOf 'Proteins'
http://edamontology.org/topic_0820
Membrane and lipoproteins
'Membrane and lipoproteins' SubClassOf 'Protein families'
'Membrane and lipoproteins' SubClassOf 'Proteins'
http://edamontology.org/topic_0079
Metabolites
'Metabolites' SubClassOf 'Small molecules'
'Metabolites' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0078
Proteins
'Proteins' SubClassOf 'Biochemistry'
'Proteins' SubClassOf 'Computational biology'
http://edamontology.org/topic_0077
Nucleic acids
'Nucleic acids' SubClassOf 'Biochemistry'
'Nucleic acids' SubClassOf 'Computational biology'
http://edamontology.org/format_1651
PATIKA entry format
'PATIKA entry format' SubClassOf 'Obsolete concept (EDAM)'
'PATIKA entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1650
INOH entry format
'INOH entry format' SubClassOf 'Obsolete concept (EDAM)'
'INOH entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3379
Preclinical and clinical studies
'Preclinical and clinical studies' SubClassOf http://edamontology.org/topic_3678
http://edamontology.org/topic_0084
Phylogeny
'Phylogeny' SubClassOf 'Computational biology'
http://edamontology.org/topic_0083
Alignment
'Alignment' SubClassOf 'Obsolete concept (EDAM)'
'Alignment' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0089
Ontology and terminology
'Ontology and terminology' SubClassOf 'Data management'
'Ontology and terminology' SubClassOf 'Informatics'
http://edamontology.org/format_1655
Panther Pathways entry format
'Panther Pathways entry format' SubClassOf 'Obsolete concept (EDAM)'
'Panther Pathways entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1654
CPDB entry format
'CPDB entry format' SubClassOf 'Obsolete concept (EDAM)'
'CPDB entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1653
aMAZE entry format
'aMAZE entry format' SubClassOf 'Obsolete concept (EDAM)'
'aMAZE entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1652
Reactome entry format
'Reactome entry format' SubClassOf 'Obsolete concept (EDAM)'
'Reactome entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0090
Data search, query and retrieval
'Data search, query and retrieval' SubClassOf 'Data management'
'Data search, query and retrieval' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0092
Data visualisation
'Data visualisation' SubClassOf 'Data management'
'Data visualisation' SubClassOf 'Computer science'
http://edamontology.org/topic_0091
Bioinformatics
'Bioinformatics' SubClassOf 'Biology'
'Bioinformatics' SubClassOf 'Computer science'
'Bioinformatics' SubClassOf 'Informatics'
http://edamontology.org/topic_0094
Nucleic acid thermodynamics
'Nucleic acid thermodynamics' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid thermodynamics' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0097
Nucleic acid structure analysis
'Nucleic acid structure analysis' SubClassOf 'Nucleic acids'
http://edamontology.org/format_1666
BioModel mathematical model format
'BioModel mathematical model format' SubClassOf 'Obsolete concept (EDAM)'
'BioModel mathematical model format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_3435
Standardization and normalization
'Standardization and normalization' SubClassOf 'Analysis'
'Standardization and normalization' SubClassOf 'Operation'
http://edamontology.org/operation_3434
Conversion
'Conversion' SubClassOf 'Utility operation'
'Conversion' SubClassOf 'Operation'
http://edamontology.org/operation_3439
Pathway or network prediction
'Pathway or network prediction' SubClassOf 'Pathway or network processing'
'Pathway or network prediction' SubClassOf 'Pathway or network analysis'
http://edamontology.org/operation_3438
Calculation
'Calculation' SubClassOf 'Analysis'
'Calculation' SubClassOf 'Operation'
http://edamontology.org/operation_3433
Assembly
'Assembly' SubClassOf 'Analysis'
'Assembly' SubClassOf 'Operation'
http://edamontology.org/operation_3432
Clustering
'Clustering' SubClassOf 'Analysis'
'Clustering' SubClassOf 'Operation'
http://edamontology.org/operation_3440
Genome assembly
'Genome assembly' SubClassOf 'Sequence assembly'
'Genome assembly' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_3441
Plotting
'Plotting' SubClassOf 'Analysis'
'Plotting' SubClassOf 'Operation'
http://edamontology.org/operation_3443
Image analysis
'Image analysis' SubClassOf 'Operation (typed)'
'Image analysis' SubClassOf 'Analysis'
http://edamontology.org/format_1579
TIGRFam entry format
'TIGRFam entry format' SubClassOf 'Obsolete concept (EDAM)'
'TIGRFam entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1577
SMART entry format
'SMART entry format' SubClassOf 'Obsolete concept (EDAM)'
'SMART entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1578
Superfamily entry format
'Superfamily entry format' SubClassOf 'Obsolete concept (EDAM)'
'Superfamily entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1575
Panther Families and HMMs entry format
'Panther Families and HMMs entry format' SubClassOf 'Obsolete concept (EDAM)'
'Panther Families and HMMs entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1576
Pfam entry format
'Pfam entry format' SubClassOf 'Obsolete concept (EDAM)'
'Pfam entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1573
PIRSF entry format
'PIRSF entry format' SubClassOf 'Obsolete concept (EDAM)'
'PIRSF entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1574
PRINTS entry format
'PRINTS entry format' SubClassOf 'Obsolete concept (EDAM)'
'PRINTS entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1571
InterPro entry abstract format
'InterPro entry abstract format' SubClassOf 'Obsolete concept (EDAM)'
'InterPro entry abstract format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1572
Gene3D entry format
'Gene3D entry format' SubClassOf 'Obsolete concept (EDAM)'
'Gene3D entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1570
InterPro entry format
'InterPro entry format' SubClassOf 'Obsolete concept (EDAM)'
'InterPro entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0803
Human disease
'Human disease' SubClassOf 'Obsolete concept (EDAM)'
'Human disease' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1697
KEGG LIGAND entry format
'KEGG LIGAND entry format' SubClassOf 'Obsolete concept (EDAM)'
'KEGG LIGAND entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1698
KEGG COMPOUND entry format
'KEGG COMPOUND entry format' SubClassOf 'Obsolete concept (EDAM)'
'KEGG COMPOUND entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1699
KEGG PLANT entry format
'KEGG PLANT entry format' SubClassOf 'Obsolete concept (EDAM)'
'KEGG PLANT entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1580
ProDom entry format
'ProDom entry format' SubClassOf 'Obsolete concept (EDAM)'
'ProDom entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1581
FSSP entry format
'FSSP entry format' SubClassOf 'Obsolete concept (EDAM)'
'FSSP entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_3463
Gene expression correlation analysis
'Gene expression correlation analysis' SubClassOf 'Correlation'
'Gene expression correlation analysis' SubClassOf http://edamontology.org/operation_3465
http://edamontology.org/topic_0111
Promoters
'Promoters' SubClassOf 'Obsolete concept (EDAM)'
'Promoters' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0110
Transcription
'Transcription' SubClassOf 'Obsolete concept (EDAM)'
'Transcription' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0114
Gene structure
'Gene structure' SubClassOf 'Nucleic acid sites, features and motifs'
http://edamontology.org/topic_0112
Nucleic acid folding
'Nucleic acid folding' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid folding' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0100
Nucleic acid restriction
'Nucleic acid restriction' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid restriction' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0107
Genetic codes and codon usage
'Genetic codes and codon usage' SubClassOf 'Obsolete concept (EDAM)'
'Genetic codes and codon usage' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0109
Gene finding
'Gene finding' SubClassOf 'Obsolete concept (EDAM)'
'Gene finding' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0133
Two-dimensional gel electrophoresis
'Two-dimensional gel electrophoresis' SubClassOf 'Obsolete concept (EDAM)'
'Two-dimensional gel electrophoresis' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0137
Protein hydropathy
'Protein hydropathy' SubClassOf 'Obsolete concept (EDAM)'
'Protein hydropathy' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0134
Mass spectrometry
'Mass spectrometry' SubClassOf 'Proteomics experiment'
'Mass spectrometry' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0135
Protein microarrays
'Protein microarrays' SubClassOf 'Obsolete concept (EDAM)'
'Protein microarrays' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1420
Sequence-profile alignment (fingerprint)
'Sequence-profile alignment (fingerprint)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence-profile alignment (fingerprint)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0486
Functional mapping
'Functional mapping' SubClassOf 'Obsolete concept (EDAM)'
'Functional mapping' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0483
Structured RNA prediction and optimisation
'Structured RNA prediction and optimisation' SubClassOf 'has topic' some 'Nucleic acid structure prediction'
http://edamontology.org/data_1438
Phylogenetic report
'Phylogenetic report' SubClassOf 'Obsolete concept (EDAM)'
'Phylogenetic report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0494
Pairwise sequence alignment generation (global)
'Pairwise sequence alignment generation (global)' SubClassOf 'Obsolete concept (EDAM)'
'Pairwise sequence alignment generation (global)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0493
Pairwise sequence alignment generation (local)
'Pairwise sequence alignment generation (local)' SubClassOf 'Obsolete concept (EDAM)'
'Pairwise sequence alignment generation (local)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0490
Dotplot plotting
'Dotplot plotting' SubClassOf 'Sequence alignment visualisation'
'Dotplot plotting' SubClassOf 'Sequence visualisation'
http://edamontology.org/data_1400
Terminal gap penalty
'Terminal gap penalty' SubClassOf 'Obsolete concept (EDAM)'
'Terminal gap penalty' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1405
Gap opening penalty (float)
'Gap opening penalty (float)' SubClassOf 'Obsolete concept (EDAM)'
'Gap opening penalty (float)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1404
Gap opening penalty (integer)
'Gap opening penalty (integer)' SubClassOf 'Obsolete concept (EDAM)'
'Gap opening penalty (integer)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1407
Gap extension penalty (float)
'Gap extension penalty (float)' SubClassOf 'Obsolete concept (EDAM)'
'Gap extension penalty (float)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1406
Gap extension penalty (integer)
'Gap extension penalty (integer)' SubClassOf 'Obsolete concept (EDAM)'
'Gap extension penalty (integer)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1409
Gap separation penalty (float)
'Gap separation penalty (float)' SubClassOf 'Obsolete concept (EDAM)'
'Gap separation penalty (float)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1408
Gap separation penalty (integer)
'Gap separation penalty (integer)' SubClassOf 'Obsolete concept (EDAM)'
'Gap separation penalty (integer)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1416
Sequence alignment report (site correlation)
'Sequence alignment report (site correlation)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence alignment report (site correlation)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1415
Sequence alignment report (site conservation)
'Sequence alignment report (site conservation)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence alignment report (site conservation)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1414
Sequence alignment metadata (quality report)
'Sequence alignment metadata (quality report)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence alignment metadata (quality report)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1418
Sequence-profile alignment (HMM)
'Sequence-profile alignment (HMM)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence-profile alignment (HMM)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1417
Sequence-profile alignment (Domainatrix signature)
'Sequence-profile alignment (Domainatrix signature)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence-profile alignment (Domainatrix signature)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0449
Sequence alignment analysis (site correlation)
'Sequence alignment analysis (site correlation)' SubClassOf 'Correlation'
'Sequence alignment analysis (site correlation)' SubClassOf http://edamontology.org/operation_3465
http://edamontology.org/topic_0594
Sequence classification
'Sequence classification' SubClassOf 'Sequence analysis'
'Sequence classification' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0595
Protein classification
'Protein classification' SubClassOf 'Obsolete concept (EDAM)'
'Protein classification' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0598
Sequence motif or profile
'Sequence motif or profile' SubClassOf 'Obsolete concept (EDAM)'
'Sequence motif or profile' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0452
Indel detection
'Indel detection' SubClassOf 'Mutation detection'
http://edamontology.org/operation_0453
Nucleosome formation potential prediction
'Nucleosome formation potential prediction' SubClassOf 'Obsolete concept (EDAM)'
'Nucleosome formation potential prediction' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0464
tRNA gene prediction
'tRNA gene prediction' SubClassOf 'Whole gene prediction'
'tRNA gene prediction' SubClassOf 'Gene prediction'
http://edamontology.org/operation_1913
Residue validation
'Residue validation' SubClassOf 'Protein model validation'
'Residue validation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_1914
Structure retrieval (water)
'Structure retrieval (water)' SubClassOf 'Obsolete concept (EDAM)'
'Structure retrieval (water)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_3429
Generation
'Generation' SubClassOf 'Analysis'
'Generation' SubClassOf 'Operation'
http://edamontology.org/operation_0474
Protein structure prediction
'Protein structure prediction' SubClassOf 'has topic' some 'Protein structure prediction'
http://edamontology.org/operation_0475
Nucleic acid structure prediction
'Nucleic acid structure prediction' SubClassOf 'has topic' some 'Nucleic acid structure analysis'
http://edamontology.org/operation_0478
Molecular docking
'Molecular docking' SubClassOf 'has topic' some 'Molecular docking'
http://edamontology.org/data_3546
Image metadata
'Image metadata' SubClassOf 'Data'
'Image metadata' SubClassOf 'Report'
http://edamontology.org/data_1330
MHC Class II epitopes report
'MHC Class II epitopes report' SubClassOf 'Obsolete concept (EDAM)'
'MHC Class II epitopes report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1331
Protein features (PEST sites)
'Protein features (PEST sites)' SubClassOf 'Obsolete concept (EDAM)'
'Protein features (PEST sites)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2090
Database entry version information
'Database entry version information' SubClassOf 'Obsolete concept (EDAM)'
'Database entry version information' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1338
Sequence database hits scores list
'Sequence database hits scores list' SubClassOf 'Obsolete concept (EDAM)'
'Sequence database hits scores list' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1339
Sequence database hits alignments list
'Sequence database hits alignments list' SubClassOf 'Obsolete concept (EDAM)'
'Sequence database hits alignments list' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2092
SNP
'SNP' SubClassOf 'Obsolete concept (EDAM)'
'SNP' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1323
Protein features report (cleavage sites)
'Protein features report (cleavage sites)' SubClassOf 'Obsolete concept (EDAM)'
'Protein features report (cleavage sites)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1324
Protein features (post-translation modifications)
'Protein features (post-translation modifications)' SubClassOf 'Obsolete concept (EDAM)'
'Protein features (post-translation modifications)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1321
Protein features (sites)
'Protein features (sites)' SubClassOf 'Obsolete concept (EDAM)'
'Protein features (sites)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1322
Protein features report (signal peptides)
'Protein features report (signal peptides)' SubClassOf 'Obsolete concept (EDAM)'
'Protein features report (signal peptides)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1329
MHC Class I epitopes report
'MHC Class I epitopes report' SubClassOf 'Obsolete concept (EDAM)'
'MHC Class I epitopes report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1327
Protein features (epitopes)
'Protein features (epitopes)' SubClassOf 'Obsolete concept (EDAM)'
'Protein features (epitopes)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1328
Protein features report (nucleic acid binding sites)
'Protein features report (nucleic acid binding sites)' SubClassOf 'Obsolete concept (EDAM)'
'Protein features report (nucleic acid binding sites)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1325
Protein features report (active sites)
'Protein features report (active sites)' SubClassOf 'Obsolete concept (EDAM)'
'Protein features report (active sites)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1326
Protein features report (binding sites)
'Protein features report (binding sites)' SubClassOf 'Obsolete concept (EDAM)'
'Protein features report (binding sites)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_2303
STRING entry format (HTML)
'STRING entry format (HTML)' SubClassOf 'Obsolete concept (EDAM)'
'STRING entry format (HTML)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1729
GO (cellular component)
'GO (cellular component)' SubClassOf 'Obsolete concept (EDAM)'
'GO (cellular component)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1358
Prosite nucleotide pattern
'Prosite nucleotide pattern' SubClassOf 'Obsolete concept (EDAM)'
'Prosite nucleotide pattern' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1359
Prosite protein pattern
'Prosite protein pattern' SubClassOf 'Obsolete concept (EDAM)'
'Prosite protein pattern' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1959
selex sequence format
'selex sequence format' SubClassOf 'Obsolete concept (EDAM)'
'selex sequence format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_2334
URI format
'URI format' SubClassOf 'Obsolete concept (EDAM)'
'URI format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_2399
Gene transcription features
'Gene transcription features' SubClassOf 'Gene structure'
'Gene transcription features' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_2397
Exons
'Exons' SubClassOf 'Coding RNA'
'Exons' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1956
phylipnon sequence format
'phylipnon sequence format' SubClassOf 'Obsolete concept (EDAM)'
'phylipnon sequence format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1955
phylip sequence format
'phylip sequence format' SubClassOf 'Obsolete concept (EDAM)'
'phylip sequence format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1730
Ontology relation type
'Ontology relation type' SubClassOf 'Obsolete concept (EDAM)'
'Ontology relation type' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1733
Ontology concept reference
'Ontology concept reference' SubClassOf 'Obsolete concept (EDAM)'
'Ontology concept reference' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1732
Ontology concept comment
'Ontology concept comment' SubClassOf 'Obsolete concept (EDAM)'
'Ontology concept comment' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1738
doc2loc document information
'doc2loc document information' SubClassOf 'Obsolete concept (EDAM)'
'doc2loc document information' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1718
HGNC
'HGNC' SubClassOf 'Obsolete concept (EDAM)'
'HGNC' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1340
Sequence database hits evaluation data
'Sequence database hits evaluation data' SubClassOf 'Obsolete concept (EDAM)'
'Sequence database hits evaluation data' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1719
NCBI taxonomy vocabulary
'NCBI taxonomy vocabulary' SubClassOf 'Obsolete concept (EDAM)'
'NCBI taxonomy vocabulary' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1345
MEME background frequencies file
'MEME background frequencies file' SubClassOf 'Obsolete concept (EDAM)'
'MEME background frequencies file' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1346
MEME motifs directive file
'MEME motifs directive file' SubClassOf 'Obsolete concept (EDAM)'
'MEME motifs directive file' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1344
MEME motif alphabet
'MEME motif alphabet' SubClassOf 'Obsolete concept (EDAM)'
'MEME motif alphabet' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1348
HMM emission and transition counts
'HMM emission and transition counts' SubClassOf 'Obsolete concept (EDAM)'
'HMM emission and transition counts' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_2323
ENZYME enzyme report format
'ENZYME enzyme report format' SubClassOf 'Obsolete concept (EDAM)'
'ENZYME enzyme report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_2329
GeneCards gene report format
'GeneCards gene report format' SubClassOf 'Obsolete concept (EDAM)'
'GeneCards gene report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1720
Plant ontology term
'Plant ontology term' SubClassOf 'Obsolete concept (EDAM)'
'Plant ontology term' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1965
treecon sequence format
'treecon sequence format' SubClassOf 'Obsolete concept (EDAM)'
'treecon sequence format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_2328
PseudoCAP gene report format
'PseudoCAP gene report format' SubClassOf 'Obsolete concept (EDAM)'
'PseudoCAP gene report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1964
plain text format (unformatted)
'plain text format (unformatted)' SubClassOf 'Sequence record format (text)'
http://edamontology.org/data_1724
ChEBI
'ChEBI' SubClassOf 'Obsolete concept (EDAM)'
'ChEBI' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1723
EMAP
'EMAP' SubClassOf 'Obsolete concept (EDAM)'
'EMAP' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1722
FMA
'FMA' SubClassOf 'Obsolete concept (EDAM)'
'FMA' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1721
UMLS
'UMLS' SubClassOf 'Obsolete concept (EDAM)'
'UMLS' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1728
GO (molecular function)
'GO (molecular function)' SubClassOf 'Obsolete concept (EDAM)'
'GO (molecular function)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_2322
BioCyc enzyme report format
'BioCyc enzyme report format' SubClassOf 'Obsolete concept (EDAM)'
'BioCyc enzyme report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1727
GO (biological process)
'GO (biological process)' SubClassOf 'Obsolete concept (EDAM)'
'GO (biological process)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1726
myGrid
'myGrid' SubClassOf 'Obsolete concept (EDAM)'
'myGrid' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1725
MGED
'MGED' SubClassOf 'Obsolete concept (EDAM)'
'MGED' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1377
Protein conserved site signature
'Protein conserved site signature' SubClassOf 'Obsolete concept (EDAM)'
'Protein conserved site signature' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1376
Protein site signature
'Protein site signature' SubClassOf 'Obsolete concept (EDAM)'
'Protein site signature' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1379
Protein binding site signature
'Protein binding site signature' SubClassOf 'Obsolete concept (EDAM)'
'Protein binding site signature' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1378
Protein active site signature
'Protein active site signature' SubClassOf 'Obsolete concept (EDAM)'
'Protein active site signature' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1373
Protein domain signature
'Protein domain signature' SubClassOf 'Obsolete concept (EDAM)'
'Protein domain signature' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1372
Protein family signature
'Protein family signature' SubClassOf 'Obsolete concept (EDAM)'
'Protein family signature' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1375
Protein repeat signature
'Protein repeat signature' SubClassOf 'Obsolete concept (EDAM)'
'Protein repeat signature' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1374
Protein region signature
'Protein region signature' SubClassOf 'Obsolete concept (EDAM)'
'Protein region signature' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1371
HMMER NULL hidden Markov model
'HMMER NULL hidden Markov model' SubClassOf 'Obsolete concept (EDAM)'
'HMMER NULL hidden Markov model' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1798
Gene ID (GeneDB Leishmania major)
'Gene ID (GeneDB Leishmania major)' SubClassOf 'Obsolete concept (EDAM)'
'Gene ID (GeneDB Leishmania major)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1799
Gene ID (GeneDB Plasmodium falciparum)
'Gene ID (GeneDB Plasmodium falciparum)' SubClassOf 'Obsolete concept (EDAM)'
'Gene ID (GeneDB Plasmodium falciparum)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1797
Gene ID (GeneDB Glossina morsitans)
'Gene ID (GeneDB Glossina morsitans)' SubClassOf 'Obsolete concept (EDAM)'
'Gene ID (GeneDB Glossina morsitans)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1790
Gene name (CGSC)
'Gene name (CGSC)' SubClassOf 'Obsolete concept (EDAM)'
'Gene name (CGSC)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1791
Gene name (HGNC)
'Gene name (HGNC)' SubClassOf 'Obsolete concept (EDAM)'
'Gene name (HGNC)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1792
Gene name (MGD)
'Gene name (MGD)' SubClassOf 'Obsolete concept (EDAM)'
'Gene name (MGD)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1793
Gene name (Bacillus subtilis)
'Gene name (Bacillus subtilis)' SubClassOf 'Obsolete concept (EDAM)'
'Gene name (Bacillus subtilis)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1368
Domainatrix signature
'Domainatrix signature' SubClassOf 'Obsolete concept (EDAM)'
'Domainatrix signature' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1364
Hidden Markov model
'Hidden Markov model' SubClassOf 'Mathematical model'
http://edamontology.org/topic_2867
VNTR
'VNTR' SubClassOf 'DNA polymorphism'
'VNTR' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_2868
Microsatellites
'Microsatellites' SubClassOf 'DNA polymorphism'
'Microsatellites' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_3476
Gene expression data format
'Gene expression data format' SubClassOf 'is format of' some 'Gene expression data'
'Gene expression data format' SubClassOf 'Format (typed)'
'Gene expression data format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_2869
RFLP
'RFLP' SubClassOf 'DNA polymorphism'
'RFLP' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_3477
Cytoscape input file format
'Cytoscape input file format' SubClassOf 'Gene expression data format'
'Cytoscape input file format' SubClassOf 'Gene expression report format'
http://edamontology.org/format_2341
NCI-Nature pathway entry format
'NCI-Nature pathway entry format' SubClassOf 'Obsolete concept (EDAM)'
'NCI-Nature pathway entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1789
Gene name (TGD)
'Gene name (TGD)' SubClassOf 'Obsolete concept (EDAM)'
'Gene name (TGD)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1787
Gene name (MaizeGDB)
'Gene name (MaizeGDB)' SubClassOf 'Obsolete concept (EDAM)'
'Gene name (MaizeGDB)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1788
Gene name (SGD)
'Gene name (SGD)' SubClassOf 'Obsolete concept (EDAM)'
'Gene name (SGD)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1785
Gene name (dictyBase)
'Gene name (dictyBase)' SubClassOf 'Obsolete concept (EDAM)'
'Gene name (dictyBase)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1786
Gene name (EcoGene primary)
'Gene name (EcoGene primary)' SubClassOf 'Obsolete concept (EDAM)'
'Gene name (EcoGene primary)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1783
Gene name (ASPGD)
'Gene name (ASPGD)' SubClassOf 'Obsolete concept (EDAM)'
'Gene name (ASPGD)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1784
Gene name (CGD)
'Gene name (CGD)' SubClassOf 'Obsolete concept (EDAM)'
'Gene name (CGD)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2524
Protein data
'Protein data' SubClassOf 'Obsolete concept (EDAM)'
'Protein data' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2525
Nucleic acid data
'Nucleic acid data' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid data' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1918
Atomic data format
'Atomic data format' SubClassOf 'Obsolete concept (EDAM)'
'Atomic data format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2528
Molecular data
'Molecular data' SubClassOf 'Obsolete concept (EDAM)'
'Molecular data' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2529
Molecule report
'Molecule report' SubClassOf 'Obsolete concept (EDAM)'
'Molecule report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1395
Score end gaps control
'Score end gaps control' SubClassOf 'Obsolete concept (EDAM)'
'Score end gaps control' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1396
Aligned sequence order
'Aligned sequence order' SubClassOf 'Obsolete concept (EDAM)'
'Aligned sequence order' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2522
Map data
'Map data' SubClassOf 'Obsolete concept (EDAM)'
'Map data' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1776
Protein report (function)
'Protein report (function)' SubClassOf 'Obsolete concept (EDAM)'
'Protein report (function)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1390
Multiple protein sequence alignment
'Multiple protein sequence alignment' SubClassOf 'Obsolete concept (EDAM)'
'Multiple protein sequence alignment' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_2376
RDF format
'RDF format' SubClassOf 'XML'
'RDF format' SubClassOf 'Format'
'RDF format' SubClassOf http://edamontology.org/format_3748
http://edamontology.org/format_1924
clustal sequence format
'clustal sequence format' SubClassOf 'Obsolete concept (EDAM)'
'clustal sequence format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1386
Sequence alignment (nucleic acid pair)
'Sequence alignment (nucleic acid pair)' SubClassOf 'Sequence alignment (pair)'
'Sequence alignment (nucleic acid pair)' SubClassOf 'Sequence alignment (nucleic acid)'
'Sequence alignment (nucleic acid pair)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1389
Multiple nucleotide sequence alignment
'Multiple nucleotide sequence alignment' SubClassOf 'Obsolete concept (EDAM)'
'Multiple nucleotide sequence alignment' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1388
Hybrid sequence alignment (pair)
'Hybrid sequence alignment (pair)' SubClassOf 'Obsolete concept (EDAM)'
'Hybrid sequence alignment (pair)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1387
Sequence alignment (protein pair)
'Sequence alignment (protein pair)' SubClassOf 'Sequence alignment (pair)'
'Sequence alignment (protein pair)' SubClassOf 'Sequence alignment (protein)'
'Sequence alignment (protein pair)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1767
CATH domain sequences (COMBS)
'CATH domain sequences (COMBS)' SubClassOf 'Obsolete concept (EDAM)'
'CATH domain sequences (COMBS)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_2842
High-throughput sequencing
'High-throughput sequencing' SubClassOf 'Obsolete concept (EDAM)'
'High-throughput sequencing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1765
CATH representative domain sequences (COMBS)
'CATH representative domain sequences (COMBS)' SubClassOf 'Obsolete concept (EDAM)'
'CATH representative domain sequences (COMBS)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1766
CATH domain sequences (ATOM)
'CATH domain sequences (ATOM)' SubClassOf 'Obsolete concept (EDAM)'
'CATH domain sequences (ATOM)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_2844
Structural clustering
'Structural clustering' SubClassOf 'Obsolete concept (EDAM)'
'Structural clustering' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1382
Sequence alignment (multiple)
'Sequence alignment (multiple)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence alignment (multiple)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_2846
Gene regulatory networks
'Gene regulatory networks' SubClassOf 'Molecular interactions, pathways and networks'
'Gene regulatory networks' SubClassOf 'Gene regulation'
'Gene regulatory networks' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_2847
Disease (specific)
'Disease (specific)' SubClassOf 'Obsolete concept (EDAM)'
'Disease (specific)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1380
Protein post-translational modification signature
'Protein post-translational modification signature' SubClassOf 'Obsolete concept (EDAM)'
'Protein post-translational modification signature' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1764
CATH representative domain sequences (ATOM)
'CATH representative domain sequences (ATOM)' SubClassOf 'Obsolete concept (EDAM)'
'CATH representative domain sequences (ATOM)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1762
CATH domain report
'CATH domain report' SubClassOf 'Obsolete concept (EDAM)'
'CATH domain report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_2839
Molecules
'Molecules' SubClassOf 'Obsolete concept (EDAM)'
'Molecules' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_2830
Immunoproteins, genes and antigens
'Immunoproteins, genes and antigens' SubClassOf 'Protein families'
'Immunoproteins, genes and antigens' SubClassOf 'Gene families'
http://edamontology.org/operation_0504
Multiple structure alignment construction
'Multiple structure alignment construction' SubClassOf 'Obsolete concept (EDAM)'
'Multiple structure alignment construction' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0500
Secondary structure alignment generation
'Secondary structure alignment generation' SubClassOf 'Obsolete concept (EDAM)'
'Secondary structure alignment generation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_2829
Ontologies, nomenclature and classification
'Ontologies, nomenclature and classification' SubClassOf 'Obsolete concept (EDAM)'
'Ontologies, nomenclature and classification' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_2826
Protein structure alignment
'Protein structure alignment' SubClassOf 'Obsolete concept (EDAM)'
'Protein structure alignment' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0507
Pairwise structure alignment generation (local)
'Pairwise structure alignment generation (local)' SubClassOf 'Obsolete concept (EDAM)'
'Pairwise structure alignment generation (local)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0508
Pairwise structure alignment generation (global)
'Pairwise structure alignment generation (global)' SubClassOf 'Obsolete concept (EDAM)'
'Pairwise structure alignment generation (global)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0505
Structure alignment (protein)
'Structure alignment (protein)' SubClassOf 'Obsolete concept (EDAM)'
'Structure alignment (protein)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0506
Structure alignment (RNA)
'Structure alignment (RNA)' SubClassOf 'Obsolete concept (EDAM)'
'Structure alignment (RNA)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0515
Data retrieval (tool metadata)
'Data retrieval (tool metadata)' SubClassOf 'Obsolete concept (EDAM)'
'Data retrieval (tool metadata)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0514
Structural profile alignment generation (multiple)
'Structural profile alignment generation (multiple)' SubClassOf 'Obsolete concept (EDAM)'
'Structural profile alignment generation (multiple)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0512
Sequence alignment generation (multiple profile)
'Sequence alignment generation (multiple profile)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence alignment generation (multiple profile)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3356
Hidden Markov model
'Hidden Markov model' SubClassOf 'Mathematical model'
'Hidden Markov model' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3413
Infectious tropical disease
'Infectious tropical disease' SubClassOf 'Infectious disease'
'Infectious tropical disease' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_2816
Gene resources
'Gene resources' SubClassOf 'Obsolete concept (EDAM)'
'Gene resources' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0188
Sequence profiles and HMMs
'Sequence profiles and HMMs' SubClassOf 'Obsolete concept (EDAM)'
'Sequence profiles and HMMs' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_2817
Yeast
'Yeast' SubClassOf 'Obsolete concept (EDAM)'
'Yeast' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0184
Threading
'Threading' SubClassOf 'Obsolete concept (EDAM)'
'Threading' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0183
Structure alignment
'Structure alignment' SubClassOf 'Obsolete concept (EDAM)'
'Structure alignment' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0182
Sequence alignment
'Sequence alignment' SubClassOf 'Obsolete concept (EDAM)'
'Sequence alignment' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0180
Protein fold recognition
'Protein fold recognition' SubClassOf 'Structure prediction'
'Protein fold recognition' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3038
Structure databases
'Structure databases' SubClassOf 'Obsolete concept (EDAM)'
'Structure databases' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3039
Nucleic acid structure
'Nucleic acid structure' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid structure' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_3464
JSON
'JSON' SubClassOf 'Textual format'
'JSON' SubClassOf 'Format'
'JSON' SubClassOf http://edamontology.org/format_3750
http://edamontology.org/topic_2811
Nomenclature
'Nomenclature' SubClassOf 'Obsolete concept (EDAM)'
'Nomenclature' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_2814
Protein structure analysis
'Protein structure analysis' SubClassOf 'Proteins'
http://edamontology.org/format_3466
EPS
'EPS' SubClassOf 'Textual format'
'EPS' SubClassOf http://edamontology.org/format_3696
http://edamontology.org/topic_2813
Disease genes and proteins
'Disease genes and proteins' SubClassOf 'Obsolete concept (EDAM)'
'Disease genes and proteins' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3032
Primer or probe design
'Primer or probe design' SubClassOf 'Obsolete concept (EDAM)'
'Primer or probe design' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_2807
Tool topic
'Tool topic' SubClassOf 'Obsolete concept (EDAM)'
'Tool topic' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0199
Genetic variation
'Genetic variation' SubClassOf 'Genotype and phenotype'
'Genetic variation' SubClassOf 'Nucleic acid sites, features and motifs'
'Genetic variation' SubClassOf 'Molecular genetics'
http://edamontology.org/topic_2809
Study topic
'Study topic' SubClassOf 'Obsolete concept (EDAM)'
'Study topic' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0195
Virtual PCR
'Virtual PCR' SubClassOf 'Obsolete concept (EDAM)'
'Virtual PCR' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0191
Phylogeny reconstruction
'Phylogeny reconstruction' SubClassOf 'Obsolete concept (EDAM)'
'Phylogeny reconstruction' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3042
Nucleic acid sequences
'Nucleic acid sequences' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid sequences' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3041
Sequence databases
'Sequence databases' SubClassOf 'Obsolete concept (EDAM)'
'Sequence databases' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3044
Protein interaction networks
'Protein interaction networks' SubClassOf 'Obsolete concept (EDAM)'
'Protein interaction networks' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3043
Protein sequences
'Protein sequences' SubClassOf 'Obsolete concept (EDAM)'
'Protein sequences' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3048
Mammals
'Mammals' SubClassOf 'Obsolete concept (EDAM)'
'Mammals' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1716
GO
'GO' SubClassOf 'Obsolete concept (EDAM)'
'GO' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1717
MeSH
'MeSH' SubClassOf 'Obsolete concept (EDAM)'
'MeSH' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1715
BioPax term
'BioPax term' SubClassOf 'Obsolete concept (EDAM)'
'BioPax term' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1977
swiss feature
'swiss feature' SubClassOf 'Obsolete concept (EDAM)'
'swiss feature' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0160
Sequence sites, features and motifs
'Sequence sites, features and motifs' SubClassOf 'Sequence analysis'
'Sequence sites, features and motifs' SubClassOf 'Computational biology'
http://edamontology.org/format_1976
pir
'pir' SubClassOf 'Obsolete concept (EDAM)'
'pir' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0166
Protein structural motifs and surfaces
'Protein structural motifs and surfaces' SubClassOf 'Protein sites, features and motifs'
http://edamontology.org/topic_0163
Sequence database search
'Sequence database search' SubClassOf 'Obsolete concept (EDAM)'
'Sequence database search' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1971
meganon sequence format
'meganon sequence format' SubClassOf 'Obsolete concept (EDAM)'
'meganon sequence format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0164
Sequence clustering
'Sequence clustering' SubClassOf 'Obsolete concept (EDAM)'
'Sequence clustering' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0167
Structural (3D) profiles
'Structural (3D) profiles' SubClassOf 'Obsolete concept (EDAM)'
'Structural (3D) profiles' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3052
Sequence clusters and classification
'Sequence clusters and classification' SubClassOf 'Obsolete concept (EDAM)'
'Sequence clusters and classification' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1980
EMBL feature
'EMBL feature' SubClassOf 'Obsolete concept (EDAM)'
'EMBL feature' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1981
GenBank feature
'GenBank feature' SubClassOf 'Obsolete concept (EDAM)'
'GenBank feature' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0172
Protein structure prediction
'Protein structure prediction' SubClassOf 'Protein structure analysis'
'Protein structure prediction' SubClassOf 'Structure prediction'
'Protein structure prediction' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0173
Nucleic acid structure prediction
'Nucleic acid structure prediction' SubClassOf 'Structure prediction'
'Nucleic acid structure prediction' SubClassOf 'Nucleic acid structure analysis'
'Nucleic acid structure prediction' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0174
Ab initio structure prediction
'Ab initio structure prediction' SubClassOf 'Obsolete concept (EDAM)'
'Ab initio structure prediction' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0175
Homology modelling
'Homology modelling' SubClassOf 'Obsolete concept (EDAM)'
'Homology modelling' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0177
Molecular docking
'Molecular docking' SubClassOf 'Structure prediction'
'Molecular docking' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0179
Protein tertiary structure prediction
'Protein tertiary structure prediction' SubClassOf 'Obsolete concept (EDAM)'
'Protein tertiary structure prediction' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3060
Regulatory RNA
'Regulatory RNA' SubClassOf 'Obsolete concept (EDAM)'
'Regulatory RNA' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0178
Protein secondary structure prediction
'Protein secondary structure prediction' SubClassOf 'Obsolete concept (EDAM)'
'Protein secondary structure prediction' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3061
Documentation and help
'Documentation and help' SubClassOf 'Literature and reference'
'Documentation and help' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3062
Genetic organisation
'Genetic organisation' SubClassOf 'Obsolete concept (EDAM)'
'Genetic organisation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0559
Immunogenicity prediction
'Immunogenicity prediction' SubClassOf 'has output' some 'Protein structure'
'Immunogenicity prediction' SubClassOf 'Peptide immunogenicity prediction'
'Immunogenicity prediction' SubClassOf 'has topic' some 'Protein folding, stability and design'
'Immunogenicity prediction' SubClassOf 'has topic' some 'Immunology'
'Immunogenicity prediction' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3063
Medical informatics
'Medical informatics' SubClassOf 'Medicine'
'Medical informatics' SubClassOf 'Computer science'
'Medical informatics' SubClassOf 'Informatics'
http://edamontology.org/operation_0517
PCR primer design (for large scale sequencing)
'PCR primer design (for large scale sequencing)' SubClassOf 'has topic' some 'Sequencing'
'PCR primer design (for large scale sequencing)' SubClassOf 'PCR primer design'
'PCR primer design (for large scale sequencing)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0516
Data retrieval (database metadata)
'Data retrieval (database metadata)' SubClassOf 'Obsolete concept (EDAM)'
'Data retrieval (database metadata)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0519
PCR primer design (for gene transcription profiling)
'PCR primer design (for gene transcription profiling)' SubClassOf 'has topic' some 'Gene expression'
'PCR primer design (for gene transcription profiling)' SubClassOf 'PCR primer design'
'PCR primer design (for gene transcription profiling)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0518
PCR primer design (for genotyping polymorphisms)
'PCR primer design (for genotyping polymorphisms)' SubClassOf 'PCR primer design'
'PCR primer design (for genotyping polymorphisms)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0143
Protein structure comparison
'Protein structure comparison' SubClassOf 'Obsolete concept (EDAM)'
'Protein structure comparison' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1995
nexusnon alignment format
'nexusnon alignment format' SubClassOf 'Obsolete concept (EDAM)'
'nexusnon alignment format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0144
Protein residue interactions
'Protein residue interactions' SubClassOf 'Obsolete concept (EDAM)'
'Protein residue interactions' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0141
Protein cleavage sites and proteolysis
'Protein cleavage sites and proteolysis' SubClassOf 'Obsolete concept (EDAM)'
'Protein cleavage sites and proteolysis' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1993
msf alignment format
'msf alignment format' SubClassOf 'Obsolete concept (EDAM)'
'msf alignment format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1994
nexus alignment format
'nexus alignment format' SubClassOf 'Obsolete concept (EDAM)'
'nexus alignment format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0149
Protein-nucleic acid interactions
'Protein-nucleic acid interactions' SubClassOf 'Obsolete concept (EDAM)'
'Protein-nucleic acid interactions' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3072
Sequence feature detection
'Sequence feature detection' SubClassOf 'Obsolete concept (EDAM)'
'Sequence feature detection' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0148
Protein-ligand interactions
'Protein-ligand interactions' SubClassOf 'Obsolete concept (EDAM)'
'Protein-ligand interactions' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3073
Nucleic acid feature detection
'Nucleic acid feature detection' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid feature detection' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0147
Protein-protein interactions
'Protein-protein interactions' SubClassOf 'Obsolete concept (EDAM)'
'Protein-protein interactions' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3071
Data management
'Data management' SubClassOf 'Topic'
'Data management' SubClassOf 'Informatics'
http://edamontology.org/operation_3283
Anonymisation
'Anonymisation' SubClassOf 'Utility operation'
'Anonymisation' SubClassOf 'Operation'
http://edamontology.org/operation_0520
PCR primer design (for conserved primers)
'PCR primer design (for conserved primers)' SubClassOf 'PCR primer design'
'PCR primer design (for conserved primers)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3074
Protein feature detection
'Protein feature detection' SubClassOf 'Obsolete concept (EDAM)'
'Protein feature detection' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0521
PCR primer design (based on gene structure)
'PCR primer design (based on gene structure)' SubClassOf 'has topic' some 'Gene structure'
'PCR primer design (based on gene structure)' SubClassOf 'PCR primer design'
'PCR primer design (based on gene structure)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3075
Biological system modelling
'Biological system modelling' SubClassOf 'Obsolete concept (EDAM)'
'Biological system modelling' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0522
PCR primer design (for methylation PCRs)
'PCR primer design (for methylation PCRs)' SubClassOf 'PCR primer design'
'PCR primer design (for methylation PCRs)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3078
Genes and proteins resources
'Genes and proteins resources' SubClassOf 'Obsolete concept (EDAM)'
'Genes and proteins resources' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0529
MPSS data processing
'MPSS data processing' SubClassOf 'Obsolete concept (EDAM)'
'MPSS data processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0528
SAGE data processing
'SAGE data processing' SubClassOf 'Obsolete concept (EDAM)'
'SAGE data processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0527
Tag mapping
'Tag mapping' SubClassOf 'has output' some 'Sequence tag profile (with gene assignment)'
http://edamontology.org/topic_0152
Carbohydrates
'Carbohydrates' SubClassOf 'Biochemistry'
'Carbohydrates' SubClassOf 'Structure analysis'
http://edamontology.org/topic_0153
Lipids
'Lipids' SubClassOf 'Biochemistry'
'Lipids' SubClassOf 'Structure analysis'
http://edamontology.org/topic_0154
Small molecules
'Small molecules' SubClassOf 'Biochemistry'
'Small molecules' SubClassOf 'Structure analysis'
http://edamontology.org/topic_0150
Protein design
'Protein design' SubClassOf 'Obsolete concept (EDAM)'
'Protein design' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0151
G protein-coupled receptors (GPCR)
'G protein-coupled receptors (GPCR)' SubClassOf 'Obsolete concept (EDAM)'
'G protein-coupled receptors (GPCR)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0156
Sequence editing
'Sequence editing' SubClassOf 'Obsolete concept (EDAM)'
'Sequence editing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0159
Sequence comparison
'Sequence comparison' SubClassOf 'Sequence analysis'
'Sequence comparison' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0158
Sequence motifs
'Sequence motifs' SubClassOf 'Obsolete concept (EDAM)'
'Sequence motifs' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0532
Gene expression profile analysis
'Gene expression profile analysis' SubClassOf 'Obsolete concept (EDAM)'
'Gene expression profile analysis' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0530
SBS data processing
'SBS data processing' SubClassOf 'Obsolete concept (EDAM)'
'SBS data processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0536
Protein structure assignment (from X-ray crystallographic data)
'Protein structure assignment (from X-ray crystallographic data)' SubClassOf 'Obsolete concept (EDAM)'
'Protein structure assignment (from X-ray crystallographic data)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0537
Protein structure assignment (from NMR data)
'Protein structure assignment (from NMR data)' SubClassOf 'Obsolete concept (EDAM)'
'Protein structure assignment (from NMR data)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_1770
Structure comparison
'Structure comparison' SubClassOf 'Structure analysis'
'Structure comparison' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0644
Proteome
'Proteome' SubClassOf 'Obsolete concept (EDAM)'
'Proteome' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0642
Low complexity sequences
'Low complexity sequences' SubClassOf 'Obsolete concept (EDAM)'
'Low complexity sequences' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0641
Repeat sequences
'Repeat sequences' SubClassOf 'Obsolete concept (EDAM)'
'Repeat sequences' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0640
Nucleic acid sequence analysis
'Nucleic acid sequence analysis' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid sequence analysis' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0655
Coding RNA
'Coding RNA' SubClassOf 'Gene transcript features'
'Coding RNA' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0574
Sequence motif rendering
'Sequence motif rendering' SubClassOf 'Obsolete concept (EDAM)'
'Sequence motif rendering' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0577
DNA linear map rendering
'DNA linear map rendering' SubClassOf 'Obsolete concept (EDAM)'
'DNA linear map rendering' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_3351
Protein surface analysis
'Protein surface analysis' SubClassOf 'Protein property calculation (from structure)'
'Protein surface analysis' SubClassOf 'has topic' some 'Protein structural motifs and surfaces'
'Protein surface analysis' SubClassOf 'Structure analysis'
'Protein surface analysis' SubClassOf 'has topic' some 'Protein properties'
http://edamontology.org/operation_3353
Ontology comparison
'Ontology comparison' SubClassOf 'Obsolete concept (EDAM)'
'Ontology comparison' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0629
Gene expression and microarray
'Gene expression and microarray' SubClassOf 'Obsolete concept (EDAM)'
'Gene expression and microarray' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0620
Drugs and target structures
'Drugs and target structures' SubClassOf 'Drug discovery'
'Drugs and target structures' SubClassOf 'Small molecules'
'Drugs and target structures' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0624
Chromosomes
'Chromosomes' SubClassOf 'DNA'
'Chromosomes' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0623
Gene families
'Gene families' SubClassOf 'Genetics'
'Gene families' SubClassOf 'Molecular genetics'
'Gene families' SubClassOf 'Proteins'
http://edamontology.org/operation_0569
Protein secondary structure rendering
Protein secondary structure visualisation
'Protein secondary structure visualisation' SubClassOf 'has topic' some 'Protein structure analysis'
'Protein secondary structure visualisation' SubClassOf 'Visualisation'
'Protein secondary structure visualisation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0568
RNA secondary structure visualisation
'RNA secondary structure visualisation' SubClassOf 'RNA secondary structure analysis'
'RNA secondary structure visualisation' SubClassOf 'Visualisation'
'RNA secondary structure visualisation' SubClassOf 'has input' some 'RNA secondary structure'
'RNA secondary structure visualisation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0567
Phylogenetic tree visualisation
'Phylogenetic tree visualisation' SubClassOf 'Phylogenetic tree processing'
'Phylogenetic tree visualisation' SubClassOf 'Phylogenetic tree analysis'
http://edamontology.org/operation_0566
Sequence cluster visualisation
'Sequence cluster visualisation' SubClassOf 'has topic' some 'Sequence comparison'
http://edamontology.org/operation_0565
Sequence alignment visualisation
'Sequence alignment visualisation' SubClassOf 'has output' some 'Sequence alignment image'
'Sequence alignment visualisation' SubClassOf 'has input' some 'Sequence alignment'
'Sequence alignment visualisation' SubClassOf 'Visualisation'
'Sequence alignment visualisation' SubClassOf 'Sequence analysis'
'Sequence alignment visualisation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0563
Codon usage table formatting
'Codon usage table formatting' SubClassOf 'Formatting'
'Codon usage table formatting' SubClassOf 'Codon usage table processing'
'Codon usage table formatting' SubClassOf 'has output' some 'Codon usage table'
'Codon usage table formatting' SubClassOf 'has input' some 'Codon usage table'
'Codon usage table formatting' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0222
Genome annotation
'Genome annotation' SubClassOf 'Obsolete concept (EDAM)'
'Genome annotation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0562
Sequence alignment formatting
'Sequence alignment formatting' SubClassOf 'has input' some 'Sequence alignment'
'Sequence alignment formatting' SubClassOf 'has output' some 'Sequence alignment'
'Sequence alignment formatting' SubClassOf 'Formatting'
'Sequence alignment formatting' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0561
Sequence formatting
'Sequence formatting' SubClassOf 'has input' some 'Sequence'
'Sequence formatting' SubClassOf 'Formatting'
'Sequence formatting' SubClassOf 'has output' some 'Sequence'
'Sequence formatting' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0560
DNA vaccine design
'DNA vaccine design' SubClassOf 'Design'
'DNA vaccine design' SubClassOf 'has topic' some 'Nucleic acid structure prediction'
http://edamontology.org/topic_0639
Protein sequence analysis
'Protein sequence analysis' SubClassOf 'Obsolete concept (EDAM)'
'Protein sequence analysis' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0221
Sequence annotation
'Sequence annotation' SubClassOf 'Obsolete concept (EDAM)'
'Sequence annotation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0220
File management
'File management' SubClassOf 'Data management'
'File management' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0635
Specific protein resources
'Specific protein resources' SubClassOf 'Obsolete concept (EDAM)'
'Specific protein resources' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0217
Literature analysis
'Literature analysis' SubClassOf 'Obsolete concept (EDAM)'
'Literature analysis' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0215
Worms
'Worms' SubClassOf 'Obsolete concept (EDAM)'
'Worms' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0211
Flies
'Flies' SubClassOf 'Obsolete concept (EDAM)'
'Flies' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0602
Molecular interactions, pathways and networks
'Molecular interactions, pathways and networks' SubClassOf 'Biology'
'Molecular interactions, pathways and networks' SubClassOf 'Computational biology'
http://edamontology.org/data_2106
Reaction ID (BioCyc)
'Reaction ID (BioCyc)' SubClassOf 'has topic' some 'Peptides and amino acids'
'Reaction ID (BioCyc)' SubClassOf 'has topic' some 'Small molecules'
http://edamontology.org/topic_0210
Fish
'Fish' SubClassOf 'Obsolete concept (EDAM)'
'Fish' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2100
Type
'Type' SubClassOf 'Obsolete concept (EDAM)'
'Type' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0608
Cell and tissue culture
'Cell and tissue culture' SubClassOf 'Obsolete concept (EDAM)'
'Cell and tissue culture' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0606
Literature data resources
'Literature data resources' SubClassOf 'Obsolete concept (EDAM)'
'Literature data resources' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0607
Laboratory information management
'Laboratory information management' SubClassOf 'Data management'
'Laboratory information management' SubClassOf 'Informatics'
http://edamontology.org/data_2103
Gene name (KEGG GENES)
'Gene name (KEGG GENES)' SubClassOf 'Obsolete concept (EDAM)'
'Gene name (KEGG GENES)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0605
Informatics
'Informatics' SubClassOf 'Obsolete concept (EDAM)'
'Informatics' SubClassOf 'Topic'
http://edamontology.org/topic_0200
Microarrays
'Microarrays' SubClassOf 'Obsolete concept (EDAM)'
'Microarrays' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0203
Gene expression
'Gene expression' SubClassOf 'Genetics'
'Gene expression' SubClassOf 'Molecular genetics'
http://edamontology.org/topic_0612
Cell cycle
'Cell cycle' SubClassOf 'Obsolete concept (EDAM)'
'Cell cycle' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0613
Peptides and amino acids
'Peptides and amino acids' SubClassOf 'Small molecules'
'Peptides and amino acids' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2925
Sequence data
'Sequence data' SubClassOf 'Obsolete concept (EDAM)'
'Sequence data' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2927
Codon usage
'Codon usage' SubClassOf 'Obsolete concept (EDAM)'
'Codon usage' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1228
UniGene entry format
'UniGene entry format' SubClassOf 'Obsolete concept (EDAM)'
'UniGene entry format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0616
Organelles
'Organelles' SubClassOf 'Obsolete concept (EDAM)'
'Organelles' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0617
Ribosomes
'Ribosomes' SubClassOf 'Obsolete concept (EDAM)'
'Ribosomes' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0618
Scents
'Scents' SubClassOf 'Obsolete concept (EDAM)'
'Scents' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3517
GWAS study
'GWAS study' SubClassOf 'Laboratory techniques'
'GWAS study' SubClassOf http://edamontology.org/topic_3678
http://edamontology.org/topic_3515
Protein-drug interactions
'Protein-drug interactions' SubClassOf 'Protein-ligand interactions'
'Protein-drug interactions' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3514
Protein-ligand interactions
'Protein-ligand interactions' SubClassOf 'Protein interactions'
'Protein-ligand interactions' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3511
Nucleic acid sites, features and motifs
'Nucleic acid sites, features and motifs' SubClassOf 'Nucleic acids'
http://edamontology.org/topic_3510
Protein sites, features and motifs
'Protein sites, features and motifs' SubClassOf 'Proteins'
http://edamontology.org/topic_3526
Protein-protein interactions
'Protein-protein interactions' SubClassOf 'Protein interactions'
'Protein-protein interactions' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3527
Cellular process pathways
'Cellular process pathways' SubClassOf 'Molecular interactions, pathways and networks'
'Cellular process pathways' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3528
Disease pathways
'Disease pathways' SubClassOf 'Molecular interactions, pathways and networks'
'Disease pathways' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3529
Environmental information processing pathways
'Environmental information processing pathways' SubClassOf 'Molecular interactions, pathways and networks'
'Environmental information processing pathways' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3522
Northern blot experiment
'Northern blot experiment' SubClassOf 'Proteomics experiment'
'Northern blot experiment' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3523
RNAi experiment
'RNAi experiment' SubClassOf 'Sequencing'
'RNAi experiment' SubClassOf 'Laboratory techniques'
http://edamontology.org/topic_3525
Protein-nucleic acid interactions
'Protein-nucleic acid interactions' SubClassOf 'Protein interactions'
'Protein-nucleic acid interactions' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3521
2D PAGE experiment
'2D PAGE experiment' SubClassOf 'Proteomics experiment'
'2D PAGE experiment' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2116
Nucleic acid features (codon)
'Nucleic acid features (codon)' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid features (codon)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1247
COG sequence cluster format
'COG sequence cluster format' SubClassOf 'Obsolete concept (EDAM)'
'COG sequence cluster format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2142
EMBOSS graph
'EMBOSS graph' SubClassOf 'Obsolete concept (EDAM)'
'EMBOSS graph' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2143
EMBOSS report
'EMBOSS report' SubClassOf 'Obsolete concept (EDAM)'
'EMBOSS report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2145
Sequence offset
'Sequence offset' SubClassOf 'Obsolete concept (EDAM)'
'Sequence offset' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2146
Threshold
'Threshold' SubClassOf 'Obsolete concept (EDAM)'
'Threshold' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2147
Protein report (transcription factor)
'Protein report (transcription factor)' SubClassOf 'Obsolete concept (EDAM)'
'Protein report (transcription factor)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2149
Database category name
'Database category name' SubClassOf 'Obsolete concept (EDAM)'
'Database category name' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2954
Article report
'Article report' SubClassOf 'Obsolete concept (EDAM)'
'Article report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_1308
Matrix/scaffold attachment sites
'Matrix/scaffold attachment sites' SubClassOf 'Gene transcription features'
'Matrix/scaffold attachment sites' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2246
Demonstration
'Demonstration' SubClassOf 'Obsolete concept (EDAM)'
'Demonstration' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2533
Nucleic acid features report (mutation)
'Nucleic acid features report (mutation)' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid features report (mutation)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_1307
Splice sites
'Splice sites' SubClassOf 'Gene transcript features'
'Splice sites' SubClassOf 'RNA splicing'
'Splice sites' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_1305
Restriction sites
'Restriction sites' SubClassOf 'DNA binding sites'
'Restriction sites' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_1304
CpG island and isochores
'CpG island and isochores' SubClassOf 'Gene transcription features'
'CpG island and isochores' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2241
Transmembrane protein visualisation
'Transmembrane protein visualisation' SubClassOf 'Protein secondary structure visualisation'
'Transmembrane protein visualisation' SubClassOf 'Structure visualisation'
http://edamontology.org/topic_1302
PolyA signal or sites
'PolyA signal or sites' SubClassOf 'Gene transcript features'
'PolyA signal or sites' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2539
Alignment data
'Alignment data' SubClassOf 'Obsolete concept (EDAM)'
'Alignment data' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2141
Window step size
'Window step size' SubClassOf 'Obsolete concept (EDAM)'
'Window step size' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2134
Results sort order
'Results sort order' SubClassOf 'Obsolete concept (EDAM)'
'Results sort order' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2132
Mutation type
'Mutation type' SubClassOf 'Obsolete concept (EDAM)'
'Mutation type' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2135
Toggle
'Toggle' SubClassOf 'Obsolete concept (EDAM)'
'Toggle' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2136
Sequence width
'Sequence width' SubClassOf 'Obsolete concept (EDAM)'
'Sequence width' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2961
Gene regulatory network report
'Gene regulatory network report' SubClassOf 'Obsolete concept (EDAM)'
'Gene regulatory network report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2966
Oligonucleotide probe sets annotation
'Oligonucleotide probe sets annotation' SubClassOf 'Oligonucleotide probe annotation'
'Oligonucleotide probe sets annotation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2967
Microarray image
'Microarray image' SubClassOf 'Obsolete concept (EDAM)'
'Microarray image' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2965
2D PAGE gel report
'2D PAGE gel report' SubClassOf 'Obsolete concept (EDAM)'
'2D PAGE gel report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2540
Data index data
'Data index data' SubClassOf 'Obsolete concept (EDAM)'
'Data index data' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2130
Sequence profile type
'Sequence profile type' SubClassOf 'Obsolete concept (EDAM)'
'Sequence profile type' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2169
Nucleic acid features (siRNA)
'Nucleic acid features (siRNA)' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid features (siRNA)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2164
Protein sequence properties plot
'Protein sequence properties plot' SubClassOf 'Obsolete concept (EDAM)'
'Protein sequence properties plot' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2224
Data retrieval (ontology concept)
'Data retrieval (ontology concept)' SubClassOf 'Obsolete concept (EDAM)'
'Data retrieval (ontology concept)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2222
Data retrieval (ontology annotation)
'Data retrieval (ontology annotation)' SubClassOf 'Obsolete concept (EDAM)'
'Data retrieval (ontology annotation)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2157
Word composition
'Word composition' SubClassOf 'Obsolete concept (EDAM)'
'Word composition' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2156
Date
'Date' SubClassOf 'Obsolete concept (EDAM)'
'Date' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2237
Data retrieval (sequence profile)
'Data retrieval (sequence profile)' SubClassOf 'Obsolete concept (EDAM)'
'Data retrieval (sequence profile)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2239
3D-1D scoring matrix generation
'3D-1D scoring matrix generation' SubClassOf 'has topic' some 'Structure comparison'
'3D-1D scoring matrix generation' SubClassOf 'has topic' some 'Structure analysis'
http://edamontology.org/data_2152
Rendering parameter
'Rendering parameter' SubClassOf 'Obsolete concept (EDAM)'
'Rendering parameter' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2151
Color
'Color' SubClassOf 'Obsolete concept (EDAM)'
'Color' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2150
Sequence profile name
'Sequence profile name' SubClassOf 'Obsolete concept (EDAM)'
'Sequence profile name' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2234
Structure file processing
'Structure file processing' SubClassOf 'Obsolete concept (EDAM)'
'Structure file processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2233
Representative sequence identification
'Representative sequence identification' SubClassOf 'has topic' some 'Sequence comparison'
http://edamontology.org/data_2991
Protein torsion angle data
'Protein torsion angle data' SubClassOf 'Protein property'
'Protein torsion angle data' SubClassOf 'Protein structure report'
http://edamontology.org/data_2579
Expressed gene list
'Expressed gene list' SubClassOf 'Obsolete concept (EDAM)'
'Expressed gene list' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2180
2 or more
'2 or more' SubClassOf 'Obsolete concept (EDAM)'
'2 or more' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0697
RNA structure
'RNA structure' SubClassOf 'Obsolete concept (EDAM)'
'RNA structure' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2581
GO concept name
'GO concept name' SubClassOf 'Obsolete concept (EDAM)'
'GO concept name' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0698
Protein tertiary structure
'Protein tertiary structure' SubClassOf 'Obsolete concept (EDAM)'
'Protein tertiary structure' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2178
1 or more
'1 or more' SubClassOf 'Obsolete concept (EDAM)'
'1 or more' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2177
Exactly 1
'Exactly 1' SubClassOf 'Obsolete concept (EDAM)'
'Exactly 1' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2176
Cardinality
'Cardinality' SubClassOf 'Obsolete concept (EDAM)'
'Cardinality' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2179
Exactly 2
'Exactly 2' SubClassOf 'Obsolete concept (EDAM)'
'Exactly 2' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2173
Sequence set (stream)
'Sequence set (stream)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence set (stream)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0694
Protein secondary structure
'Protein secondary structure' SubClassOf 'Obsolete concept (EDAM)'
'Protein secondary structure' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2584
GO concept name (cellular component)
'GO concept name (cellular component)' SubClassOf 'Obsolete concept (EDAM)'
'GO concept name (cellular component)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2590
Hierarchy identifier
'Hierarchy identifier' SubClassOf 'Obsolete concept (EDAM)'
'Hierarchy identifier' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0663
tRNA
'tRNA' SubClassOf 'Obsolete concept (EDAM)'
'tRNA' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2592
Cancer type
'Cancer type' SubClassOf 'Obsolete concept (EDAM)'
'Cancer type' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2972
Workflow
'Workflow' SubClassOf 'Obsolete concept (EDAM)'
'Workflow' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2971
Workflow data
'Workflow data' SubClassOf 'Obsolete concept (EDAM)'
'Workflow data' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2973
Secondary structure data
'Secondary structure data' SubClassOf 'Obsolete concept (EDAM)'
'Secondary structure data' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1308
Nucleic acid features report (matrix/scaffold attachment sites)
'Nucleic acid features report (matrix/scaffold attachment sites)' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid features report (matrix/scaffold attachment sites)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1307
Nucleic acid features report (splice sites)
'Nucleic acid features report (splice sites)' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid features report (splice sites)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1309
Gene features (exonic splicing enhancer)
'Gene features (exonic splicing enhancer)' SubClassOf 'Obsolete concept (EDAM)'
'Gene features (exonic splicing enhancer)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1304
Nucleic acid features report (CpG island and isochore)
'Nucleic acid features report (CpG island and isochore)' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid features report (CpG island and isochore)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1303
Nucleic acid features (quadruplexes)
'Nucleic acid features (quadruplexes)' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid features (quadruplexes)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2264
Data retrieval (pathway or network)
'Data retrieval (pathway or network)' SubClassOf 'Obsolete concept (EDAM)'
'Data retrieval (pathway or network)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1306
Nucleosome exclusion sequences
'Nucleosome exclusion sequences' SubClassOf 'Obsolete concept (EDAM)'
'Nucleosome exclusion sequences' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2265
Data retrieval (identifier)
'Data retrieval (identifier)' SubClassOf 'Obsolete concept (EDAM)'
'Data retrieval (identifier)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1305
Nucleic acid features report (restriction sites)
'Nucleic acid features report (restriction sites)' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid features report (restriction sites)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1300
Gene and transcript structure (report)
'Gene and transcript structure (report)' SubClassOf 'Obsolete concept (EDAM)'
'Gene and transcript structure (report)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2598
Secondary structure alignment metadata
'Secondary structure alignment metadata' SubClassOf 'Obsolete concept (EDAM)'
'Secondary structure alignment metadata' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1302
Nucleic acid features report (PolyA signal or site)
'Nucleic acid features report (PolyA signal or site)' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid features report (PolyA signal or site)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2599
Molecule interaction report
'Molecule interaction report' SubClassOf 'Obsolete concept (EDAM)'
'Molecule interaction report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1301
Mobile genetic elements
'Mobile genetic elements' SubClassOf 'Obsolete concept (EDAM)'
'Mobile genetic elements' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0660
rRNA
'rRNA' SubClassOf 'Obsolete concept (EDAM)'
'rRNA' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2989
Protein features report (key folding sites)
'Protein features report (key folding sites)' SubClassOf 'Obsolete concept (EDAM)'
'Protein features report (key folding sites)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2987
Classification report
'Classification report' SubClassOf 'Obsolete concept (EDAM)'
'Classification report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2986
Nucleic acid classification
'Nucleic acid classification' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid classification' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2983
Pathway or network data
'Pathway or network data' SubClassOf 'Obsolete concept (EDAM)'
'Pathway or network data' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2982
Sequence profile data
'Sequence profile data' SubClassOf 'Obsolete concept (EDAM)'
'Sequence profile data' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2981
Sequence motif data
'Sequence motif data' SubClassOf 'Obsolete concept (EDAM)'
'Sequence motif data' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2980
Protein classification
'Protein classification' SubClassOf 'Obsolete concept (EDAM)'
'Protein classification' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2198
Gene cluster
'Gene cluster' SubClassOf 'Obsolete concept (EDAM)'
'Gene cluster' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_1311
Operon
'Operon' SubClassOf 'Gene structure'
'Operon' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_1312
Promoters
'Promoters' SubClassOf 'Gene transcription features'
'Promoters' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2191
Protein features report (chemical modifications)
'Protein features report (chemical modifications)' SubClassOf 'Obsolete concept (EDAM)'
'Protein features report (chemical modifications)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2192
Error
'Error' SubClassOf 'Obsolete concept (EDAM)'
'Error' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1315
Transcription factor binding sites
'Transcription factor binding sites' SubClassOf 'Obsolete concept (EDAM)'
'Transcription factor binding sites' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1314
Gene features (SECIS element)
'Gene features (SECIS element)' SubClassOf 'Obsolete concept (EDAM)'
'Gene features (SECIS element)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1313
Coding region
'Coding region' SubClassOf 'Obsolete concept (EDAM)'
'Coding region' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1312
Nucleic acid features report (promoters)
'Nucleic acid features report (promoters)' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid features report (promoters)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1311
Gene features report (operon)
'Gene features report (operon)' SubClassOf 'Obsolete concept (EDAM)'
'Gene features report (operon)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1310
Nucleic acid features (microRNA)
'Nucleic acid features (microRNA)' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid features (microRNA)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1237
HMMER synthetic sequences set
'HMMER synthetic sequences set' SubClassOf 'Obsolete concept (EDAM)'
'HMMER synthetic sequences set' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2602
Genotype and phenotype data
'Genotype and phenotype data' SubClassOf 'Obsolete concept (EDAM)'
'Genotype and phenotype data' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2601
Small molecule data
'Small molecule data' SubClassOf 'Obsolete concept (EDAM)'
'Small molecule data' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1235
Sequence cluster
'Sequence cluster' SubClassOf 'has topic' some 'Sequence comparison'
'Sequence cluster' SubClassOf 'has topic' some 'Protein families'
'Sequence cluster' SubClassOf 'has topic' some 'Gene families'
http://edamontology.org/data_1236
Psiblast checkpoint file
'Psiblast checkpoint file' SubClassOf 'Obsolete concept (EDAM)'
'Psiblast checkpoint file' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1601
Nc statistic
'Nc statistic' SubClassOf 'Obsolete concept (EDAM)'
'Nc statistic' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1634
Linkage disequilibrium (report)
'Linkage disequilibrium (report)' SubClassOf 'Obsolete concept (EDAM)'
'Linkage disequilibrium (report)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1810
ColiCard report format
'ColiCard report format' SubClassOf 'Obsolete concept (EDAM)'
'ColiCard report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1274
Map
'Map' SubClassOf 'Data'
'Map' SubClassOf 'Map data'
http://edamontology.org/operation_1774
Annotation retrieval
'Annotation retrieval' SubClassOf 'Obsolete concept (EDAM)'
'Annotation retrieval' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0992
Ligand identifier
'Ligand identifier' SubClassOf 'Obsolete concept (EDAM)'
'Ligand identifier' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1656
Metabolic pathway report
'Metabolic pathway report' SubClassOf 'Obsolete concept (EDAM)'
'Metabolic pathway report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3118
Protein topological domains
'Protein topological domains' SubClassOf 'Protein domains and folds'
'Protein topological domains' SubClassOf 'Protein domains'
'Protein topological domains' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1657
Genetic information processing pathway report
'Genetic information processing pathway report' SubClassOf 'Obsolete concept (EDAM)'
'Genetic information processing pathway report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1658
Environmental information processing pathway report
'Environmental information processing pathway report' SubClassOf 'Obsolete concept (EDAM)'
'Environmental information processing pathway report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1659
Signal transduction pathway report
'Signal transduction pathway report' SubClassOf 'Obsolete concept (EDAM)'
'Signal transduction pathway report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3120
Protein variants
'Protein variants' SubClassOf 'Protein structure analysis'
'Protein variants' SubClassOf 'Protein expression'
http://edamontology.org/data_1264
Sequence composition table
'Sequence composition table' SubClassOf 'Obsolete concept (EDAM)'
'Sequence composition table' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1269
DAS sequence feature annotation
'DAS sequence feature annotation' SubClassOf 'Obsolete concept (EDAM)'
'DAS sequence feature annotation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3123
Expression signals
'Expression signals' SubClassOf 'Gene structure'
'Expression signals' SubClassOf 'Gene expression'
'Expression signals' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_1781
Gene regulatory network analysis
'Gene regulatory network analysis' SubClassOf 'has topic' some 'Gene regulatory networks'
'Gene regulatory network analysis' SubClassOf 'has topic' some 'Molecular interactions, pathways and networks'
http://edamontology.org/operation_1780
Sequence submission
'Sequence submission' SubClassOf 'Obsolete concept (EDAM)'
'Sequence submission' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1809
BacMap gene card format
'BacMap gene card format' SubClassOf 'Obsolete concept (EDAM)'
'BacMap gene card format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_1808
GeneIlluminator gene report format
'GeneIlluminator gene report format' SubClassOf 'Obsolete concept (EDAM)'
'GeneIlluminator gene report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1642
Affymetrix probe sets library file
'Affymetrix probe sets library file' SubClassOf 'Obsolete concept (EDAM)'
'Affymetrix probe sets library file' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1643
Affymetrix probe sets information library file
'Affymetrix probe sets information library file' SubClassOf 'Obsolete concept (EDAM)'
'Affymetrix probe sets information library file' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1646
Molecular weights standard fingerprint
'Molecular weights standard fingerprint' SubClassOf 'Peptide mass fingerprint'
'Molecular weights standard fingerprint' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3127
DNA replication and recombination
'DNA replication and recombination' SubClassOf 'DNA binding sites'
'DNA replication and recombination' SubClassOf 'DNA'
http://edamontology.org/topic_3126
Nucleic acid repeats
'Nucleic acid repeats' SubClassOf 'Nucleic acid sites, features and motifs'
'Nucleic acid repeats' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1256
Sequence features (comparative)
'Sequence features (comparative)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence features (comparative)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1258
Sequence property (nucleic acid)
'Sequence property (nucleic acid)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence property (nucleic acid)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1257
Sequence property (protein)
'Sequence property (protein)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence property (protein)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1252
Sequence length range
'Sequence length range' SubClassOf 'Obsolete concept (EDAM)'
'Sequence length range' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1251
Window size
'Window size' SubClassOf 'Obsolete concept (EDAM)'
'Window size' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1253
Sequence information report
'Sequence information report' SubClassOf 'Obsolete concept (EDAM)'
'Sequence information report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2627
Molecular interaction ID
'Molecular interaction ID' SubClassOf 'Obsolete concept (EDAM)'
'Molecular interaction ID' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1673
Swiss-Prot to PDB mapping
'Swiss-Prot to PDB mapping' SubClassOf 'Obsolete concept (EDAM)'
'Swiss-Prot to PDB mapping' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1674
Sequence database cross-references
'Sequence database cross-references' SubClassOf 'Obsolete concept (EDAM)'
'Sequence database cross-references' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1675
Job status
'Job status' SubClassOf 'Obsolete concept (EDAM)'
'Job status' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1676
Job ID
'Job ID' SubClassOf 'Obsolete concept (EDAM)'
'Job ID' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1670
Database version information
'Database version information' SubClassOf 'Obsolete concept (EDAM)'
'Database version information' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1671
Tool version information
'Tool version information' SubClassOf 'Obsolete concept (EDAM)'
'Tool version information' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1672
CATH version information
'CATH version information' SubClassOf 'Obsolete concept (EDAM)'
'CATH version information' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1250
Word size
'Word size' SubClassOf 'Obsolete concept (EDAM)'
'Word size' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1677
Job type
'Job type' SubClassOf 'Obsolete concept (EDAM)'
'Job type' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1678
Tool log
'Tool log' SubClassOf 'Obsolete concept (EDAM)'
'Tool log' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1679
DaliLite log file
'DaliLite log file' SubClassOf 'Obsolete concept (EDAM)'
'DaliLite log file' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1244
primersearch primer pairs sequence record
'primersearch primer pairs sequence record' SubClassOf 'Obsolete concept (EDAM)'
'primersearch primer pairs sequence record' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1243
Primer3 mispriming library file
'Primer3 mispriming library file' SubClassOf 'Obsolete concept (EDAM)'
'Primer3 mispriming library file' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1242
Primer3 internal oligo mishybridizing library
'Primer3 internal oligo mishybridizing library' SubClassOf 'Obsolete concept (EDAM)'
'Primer3 internal oligo mishybridizing library' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1241
vectorstrip cloning vector definition file
'vectorstrip cloning vector definition file' SubClassOf 'Obsolete concept (EDAM)'
'vectorstrip cloning vector definition file' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1664
MIRIAM datatype
'MIRIAM datatype' SubClassOf 'Obsolete concept (EDAM)'
'MIRIAM datatype' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1663
Protein interaction networks
'Protein interaction networks' SubClassOf 'Obsolete concept (EDAM)'
'Protein interaction networks' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1660
Cellular process pathways report
'Cellular process pathways report' SubClassOf 'Obsolete concept (EDAM)'
'Cellular process pathways report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1661
Disease pathway or network report
'Disease pathway or network report' SubClassOf 'Obsolete concept (EDAM)'
'Disease pathway or network report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0948
Data resource definition
'Data resource definition' SubClassOf 'Obsolete concept (EDAM)'
'Data resource definition' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0952
EMBOSS database resource definition
'EMBOSS database resource definition' SubClassOf 'Obsolete concept (EDAM)'
'EMBOSS database resource definition' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0953
Version information
'Version information' SubClassOf 'Obsolete concept (EDAM)'
'Version information' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0956
Data index report
'Data index report' SubClassOf 'has topic' some 'File management'
'Data index report' SubClassOf 'has topic' some 'Biological databases'
http://edamontology.org/data_0955
Data index
'Data index' SubClassOf 'has topic' some 'File management'
'Data index' SubClassOf 'has topic' some 'Biological databases'
http://edamontology.org/format_1316
est2genome format
'est2genome format' SubClassOf 'Gene features (coding region) format'
'est2genome format' SubClassOf 'Gene annotation format'
http://edamontology.org/operation_3191
Trim to reference
'Trim to reference' SubClassOf 'Sequence trimming'
'Trim to reference' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0959
Job metadata
'Job metadata' SubClassOf 'Obsolete concept (EDAM)'
'Job metadata' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_3190
Trim vector
'Trim vector' SubClassOf 'Sequence trimming'
'Trim vector' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0964
Scent annotation
'Scent annotation' SubClassOf 'Obsolete concept (EDAM)'
'Scent annotation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3169
ChIP-seq
'ChIP-seq' SubClassOf 'Obsolete concept (EDAM)'
'ChIP-seq' SubClassOf 'Sequencing'
'ChIP-seq' SubClassOf http://edamontology.org/topic_3656
http://edamontology.org/data_1294
GlobPlot domain image
'GlobPlot domain image' SubClassOf 'Obsolete concept (EDAM)'
'GlobPlot domain image' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1293
SMART protein schematic
'SMART protein schematic' SubClassOf 'Obsolete concept (EDAM)'
'SMART protein schematic' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1292
InterPro architecture image
'InterPro architecture image' SubClassOf 'Obsolete concept (EDAM)'
'InterPro architecture image' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1291
InterPro detailed match image
'InterPro detailed match image' SubClassOf 'Obsolete concept (EDAM)'
'InterPro detailed match image' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3139
Sequence tagged sites
'Sequence tagged sites' SubClassOf 'Nucleic acid sites, features and motifs'
'Sequence tagged sites' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1290
InterPro compact match image
'InterPro compact match image' SubClassOf 'Obsolete concept (EDAM)'
'InterPro compact match image' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_2953
Nucleic acid design
'Nucleic acid design' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid design' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3542
Protein secondary structure
'Protein secondary structure' SubClassOf 'Protein sites, features and motifs'
http://edamontology.org/topic_3543
Protein sequence repeats
'Protein sequence repeats' SubClassOf 'Protein sites, features and motifs'
'Protein sequence repeats' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3540
Protein key folding sites
'Protein key folding sites' SubClassOf 'Protein sites, features and motifs'
'Protein key folding sites' SubClassOf 'Protein folding, stability and design'
'Protein key folding sites' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3541
Protein post-translational modifications
'Protein post-translational modifications' SubClassOf 'Protein sites, features and motifs'
'Protein post-translational modifications' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0581
Database
'Database' SubClassOf 'Obsolete concept (EDAM)'
'Database' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0582
Ontology
'Ontology' SubClassOf 'Data'
'Ontology' SubClassOf 'Ontology data'
http://edamontology.org/data_0583
Directory metadata
'Directory metadata' SubClassOf 'Obsolete concept (EDAM)'
'Directory metadata' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0978
Discrete entity identifier
'Discrete entity identifier' SubClassOf 'Obsolete concept (EDAM)'
'Discrete entity identifier' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0979
Entity feature identifier
'Entity feature identifier' SubClassOf 'Obsolete concept (EDAM)'
'Entity feature identifier' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0974
Entity identifier
'Entity identifier' SubClassOf 'Obsolete concept (EDAM)'
'Entity identifier' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3544
Protein signal peptides
'Protein signal peptides' SubClassOf 'Protein sites, features and motifs'
'Protein signal peptides' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0975
Data resource identifier
'Data resource identifier' SubClassOf 'Obsolete concept (EDAM)'
'Data resource identifier' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3135
Signal or transit peptide
'Signal or transit peptide' SubClassOf 'Gene transcript features'
'Signal or transit peptide' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1299
Sequence features (repeats)
'Sequence features (repeats)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence features (repeats)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0971
Article
'Article' SubClassOf 'Data'
'Article' SubClassOf 'Article data'
http://edamontology.org/data_1298
Sequence motif matches
'Sequence motif matches' SubClassOf 'Obsolete concept (EDAM)'
'Sequence motif matches' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1281
Sequence signature map
'Sequence signature map' SubClassOf 'Obsolete concept (EDAM)'
'Sequence signature map' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3530
Genetic information processing pathways
'Genetic information processing pathways' SubClassOf 'Molecular interactions, pathways and networks'
'Genetic information processing pathways' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3531
Protein super-secondary structure
'Protein super-secondary structure' SubClassOf 'Protein structural motifs and surfaces'
'Protein super-secondary structure' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3538
Protein disordered structure
'Protein disordered structure' SubClassOf 'Protein sites, features and motifs'
'Protein disordered structure' SubClassOf 'Protein structure analysis'
http://edamontology.org/topic_3537
Protein chemical modifications
'Protein chemical modifications' SubClassOf 'Protein sites, features and motifs'
'Protein chemical modifications' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3539
Protein domains
'Protein domains' SubClassOf 'Protein sites, features and motifs'
'Protein domains' SubClassOf 'Protein domains and folds'
'Protein domains' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3534
Protein binding sites
'Protein binding sites' SubClassOf 'Protein structural motifs and surfaces'
'Protein binding sites' SubClassOf 'Protein sites, features and motifs'
http://edamontology.org/topic_3533
Protein active sites
'Protein active sites' SubClassOf 'Protein structural motifs and surfaces'
'Protein active sites' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0986
Chemical identifier
'Chemical identifier' SubClassOf 'Obsolete concept (EDAM)'
'Chemical identifier' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3536
Protein cleavage sites
'Protein cleavage sites' SubClassOf 'Protein sites, features and motifs'
'Protein cleavage sites' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0985
Molecule type
'Molecule type' SubClassOf 'Obsolete concept (EDAM)'
'Molecule type' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3535
Protein-nucleic acid binding sites
'Protein-nucleic acid binding sites' SubClassOf 'Protein structural motifs and surfaces'
'Protein-nucleic acid binding sites' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0981
Phenomenon identifier
'Phenomenon identifier' SubClassOf 'Obsolete concept (EDAM)'
'Phenomenon identifier' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0980
Entity collection identifier
'Entity collection identifier' SubClassOf 'Obsolete concept (EDAM)'
'Entity collection identifier' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3231
GWAS report
'GWAS report' SubClassOf 'Obsolete concept (EDAM)'
'GWAS report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0904
Protein features (mutation)
'Protein features (mutation)' SubClassOf 'Obsolete concept (EDAM)'
'Protein features (mutation)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0907
Protein family report
'Protein family report' SubClassOf 'has topic' some 'Protein families'
'Protein family report' SubClassOf 'has topic' some 'Gene families'
http://edamontology.org/data_0906
Protein interaction report
'Protein interaction report' SubClassOf 'Protein report'
'Protein interaction report' SubClassOf 'Protein structure report'
http://edamontology.org/data_0911
Nucleotide base annotation
'Nucleotide base annotation' SubClassOf 'Obsolete concept (EDAM)'
'Nucleotide base annotation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0918
DNA variation
'DNA variation' SubClassOf 'Obsolete concept (EDAM)'
'DNA variation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0917
Gene classification
'Gene classification' SubClassOf 'Obsolete concept (EDAM)'
'Gene classification' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0919
Chromosome report
'Chromosome report' SubClassOf 'has topic' some 'Chromosomes'
http://edamontology.org/data_0922
Nucleic acid features report (primers)
'Nucleic acid features report (primers)' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid features report (primers)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0923
PCR experiment report
'PCR experiment report' SubClassOf 'Obsolete concept (EDAM)'
'PCR experiment report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3179
ChIP-on-chip
'ChIP-on-chip' SubClassOf 'Obsolete concept (EDAM)'
'ChIP-on-chip' SubClassOf http://edamontology.org/topic_3656
http://edamontology.org/data_3268
Sequence feature type
'Sequence feature type' SubClassOf 'Obsolete concept (EDAM)'
'Sequence feature type' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_3269
Gene homology (report)
'Gene homology (report)' SubClassOf 'Obsolete concept (EDAM)'
'Gene homology (report)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3177
DNA-Seq
'DNA-Seq' SubClassOf 'Obsolete concept (EDAM)'
'DNA-Seq' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3178
RNA-Seq alignment
'RNA-Seq alignment' SubClassOf 'Obsolete concept (EDAM)'
'RNA-Seq alignment' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3175
Structural variation
'Structural variation' SubClassOf 'Chromosomes'
'Structural variation' SubClassOf 'DNA'
http://edamontology.org/topic_3171
DNA methylation
'DNA methylation' SubClassOf 'Obsolete concept (EDAM)'
'DNA methylation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0933
SAGE experimental data
'SAGE experimental data' SubClassOf 'Obsolete concept (EDAM)'
'SAGE experimental data' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0934
MPSS experimental data
'MPSS experimental data' SubClassOf 'Obsolete concept (EDAM)'
'MPSS experimental data' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0935
SBS experimental data
'SBS experimental data' SubClassOf 'Obsolete concept (EDAM)'
'SBS experimental data' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3170
RNA-Seq
'RNA-Seq' SubClassOf 'Obsolete concept (EDAM)'
'RNA-Seq' SubClassOf 'Sequencing'
http://edamontology.org/data_0936
Sequence tag profile (with gene assignment)
'Sequence tag profile (with gene assignment)' SubClassOf 'Sequence tag profile'
'Sequence tag profile (with gene assignment)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_3189
Trim ends
'Trim ends' SubClassOf 'Sequence trimming'
'Trim ends' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0931
Microarray experiment report
'Microarray experiment report' SubClassOf 'Obsolete concept (EDAM)'
'Microarray experiment report' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0932
Oligonucleotide probe data
'Oligonucleotide probe data' SubClassOf 'Obsolete concept (EDAM)'
'Oligonucleotide probe data' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0946
Pathway or network annotation
'Pathway or network annotation' SubClassOf 'Obsolete concept (EDAM)'
'Pathway or network annotation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_0947
Biological pathway map
'Biological pathway map' SubClassOf 'Obsolete concept (EDAM)'
'Biological pathway map' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0741
Protein sequence alignment
'Protein sequence alignment' SubClassOf 'Obsolete concept (EDAM)'
'Protein sequence alignment' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0740
Nucleic acid sequence alignment
'Nucleic acid sequence alignment' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid sequence alignment' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0280
Data retrieval (restriction enzyme annotation)
'Data retrieval (restriction enzyme annotation)' SubClassOf 'Obsolete concept (EDAM)'
'Data retrieval (restriction enzyme annotation)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0281
Genetic marker identification
'Genetic marker identification' SubClassOf 'Obsolete concept (EDAM)'
'Genetic marker identification' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0749
Transcription factors and regulatory sites
'Transcription factors and regulatory sites' SubClassOf 'Protein families'
'Transcription factors and regulatory sites' SubClassOf 'Promoters'
'Transcription factors and regulatory sites' SubClassOf 'Gene expression'
'Transcription factors and regulatory sites' SubClassOf 'Proteins'
http://edamontology.org/topic_0748
Protein sites and features
'Protein sites and features' SubClassOf 'Obsolete concept (EDAM)'
'Protein sites and features' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2201
Sequence record full
'Sequence record full' SubClassOf 'Obsolete concept (EDAM)'
'Sequence record full' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0747
Nucleic acid sites and features
'Nucleic acid sites and features' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid sites and features' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_2034
Biological model format
'Biological model format' SubClassOf 'Obsolete concept (EDAM)'
'Biological model format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0751
Phosphorylation sites
'Phosphorylation sites' SubClassOf 'Obsolete concept (EDAM)'
'Phosphorylation sites' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0753
Metabolic pathways
'Metabolic pathways' SubClassOf 'Molecular interactions, pathways and networks'
'Metabolic pathways' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0293
Hybrid sequence alignment construction
'Hybrid sequence alignment construction' SubClassOf 'Obsolete concept (EDAM)'
'Hybrid sequence alignment construction' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0754
Signaling pathways
'Signaling pathways' SubClassOf 'Molecular interactions, pathways and networks'
'Signaling pathways' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0291
Sequence clustering
'Sequence clustering' SubClassOf 'has topic' some 'Sequence comparison'
http://edamontology.org/operation_0299
3D profile-to-3D profile alignment
'3D profile-to-3D profile alignment' SubClassOf 'Alignment'
http://edamontology.org/format_2045
Electron microscopy model format
'Electron microscopy model format' SubClassOf 'Obsolete concept (EDAM)'
'Electron microscopy model format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_3259
Transcriptome assembly (de novo)
'Transcriptome assembly (de novo)' SubClassOf 'Obsolete concept (EDAM)'
'Transcriptome assembly (de novo)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0767
Protein and peptide identification
'Protein and peptide identification' SubClassOf 'Obsolete concept (EDAM)'
'Protein and peptide identification' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0769
Workflows
'Workflows' SubClassOf 'Obsolete concept (EDAM)'
'Workflows' SubClassOf 'Data management'
http://edamontology.org/format_2051
Polymorphism report format
'Polymorphism report format' SubClassOf 'Obsolete concept (EDAM)'
'Polymorphism report format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_2056
Microarray experiment data format
'Microarray experiment data format' SubClassOf 'Format (typed)'
'Microarray experiment data format' SubClassOf 'Experiment annotation format'
http://edamontology.org/format_2058
Gene expression report format
'Gene expression report format' SubClassOf 'is format of' some 'Processed microarray data'
'Gene expression report format' SubClassOf 'Gene annotation format'
'Gene expression report format' SubClassOf 'Format (typed)'
'Gene expression report format' SubClassOf 'is format of' some 'Gene expression data'
http://edamontology.org/format_2059
Genotype and phenotype annotation format
'Genotype and phenotype annotation format' SubClassOf 'Obsolete concept (EDAM)'
'Genotype and phenotype annotation format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0770
Data types and objects
'Data types and objects' SubClassOf 'Obsolete concept (EDAM)'
'Data types and objects' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0771
Theoretical biology
'Theoretical biology' SubClassOf 'Obsolete concept (EDAM)'
'Theoretical biology' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0779
Mitochondria
'Mitochondria' SubClassOf 'Obsolete concept (EDAM)'
'Mitochondria' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_3260
Transcriptome assembly (mapping)
'Transcriptome assembly (mapping)' SubClassOf 'Obsolete concept (EDAM)'
'Transcriptome assembly (mapping)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2240
Heterogen annotation
'Heterogen annotation' SubClassOf 'Obsolete concept (EDAM)'
'Heterogen annotation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_2063
Protein report (enzyme) format
'Protein report (enzyme) format' SubClassOf 'Obsolete concept (EDAM)'
'Protein report (enzyme) format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2248
Schema
'Schema' SubClassOf 'Obsolete concept (EDAM)'
'Schema' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2247
Phylogenetic consensus tree
'Phylogenetic consensus tree' SubClassOf 'Obsolete concept (EDAM)'
'Phylogenetic consensus tree' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2245
Sequence set (bootstrapped)
'Sequence set (bootstrapped)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence set (bootstrapped)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2242
Phylogenetic property values
'Phylogenetic property values' SubClassOf 'Obsolete concept (EDAM)'
'Phylogenetic property values' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2249
DTD
'DTD' SubClassOf 'Obsolete concept (EDAM)'
'DTD' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_3200
DNA barcoding
'DNA barcoding' SubClassOf 'Taxonomic classification'
http://edamontology.org/data_2235
Raw SCOP domain classification
'Raw SCOP domain classification' SubClassOf 'Obsolete concept (EDAM)'
'Raw SCOP domain classification' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2236
Raw CATH domain classification
'Raw CATH domain classification' SubClassOf 'Obsolete concept (EDAM)'
'Raw CATH domain classification' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_3219
Read pre-processing
'Read pre-processing' SubClassOf 'Validation'
'Read pre-processing' SubClassOf 'Sequencing quality control'
http://edamontology.org/operation_3214
Spectral analysis
'Spectral analysis' SubClassOf 'has topic' some 'Proteomics'
http://edamontology.org/operation_3213
Genome indexing (suffix arrays)
'Genome indexing (suffix arrays)' SubClassOf 'Genome indexing'
'Genome indexing (suffix arrays)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_3212
Genome indexing (Burrows-Wheeler)
'Genome indexing (Burrows-Wheeler)' SubClassOf 'Genome indexing'
'Genome indexing (Burrows-Wheeler)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://www.geneontology.org/formats/oboInOwl#ObsoleteClass
Obsolete concept (EDAM)
'Obsolete concept (EDAM)' SubClassOf 'Obsolete concept (EDAM)'
http://edamontology.org/topic_0724
Protein families
'Protein families' SubClassOf 'Proteins'
'Protein families' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0722
Nucleic acid classification
'Nucleic acid classification' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid classification' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_3229
Exome analysis
'Exome analysis' SubClassOf 'Nucleic acid sequence analysis'
'Exome analysis' SubClassOf 'Sequence assembly'
http://edamontology.org/operation_3223
Differential expression analysis
'Differential expression analysis' SubClassOf 'Gene expression profile comparison'
'Differential expression analysis' SubClassOf 'Nucleic acid comparison'
'Differential expression analysis' SubClassOf http://edamontology.org/operation_3742
http://edamontology.org/data_2213
Mutation annotation (prevalence)
'Mutation annotation (prevalence)' SubClassOf 'Obsolete concept (EDAM)'
'Mutation annotation (prevalence)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2212
Mutation annotation (basic)
'Mutation annotation (basic)' SubClassOf 'Obsolete concept (EDAM)'
'Mutation annotation (basic)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2215
Mutation annotation (functional)
'Mutation annotation (functional)' SubClassOf 'Obsolete concept (EDAM)'
'Mutation annotation (functional)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2214
Mutation annotation (prognostic)
'Mutation annotation (prognostic)' SubClassOf 'Obsolete concept (EDAM)'
'Mutation annotation (prognostic)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2217
Tumor annotation
'Tumor annotation' SubClassOf 'Obsolete concept (EDAM)'
'Tumor annotation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2218
Server metadata
'Server metadata' SubClassOf 'Obsolete concept (EDAM)'
'Server metadata' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1688
EMBOSS vectorstrip log file
'EMBOSS vectorstrip log file' SubClassOf 'Obsolete concept (EDAM)'
'EMBOSS vectorstrip log file' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2512
Sequence editing (protein)
'Sequence editing (protein)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence editing (protein)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_3161
MAGE-ML
'MAGE-ML' SubClassOf 'Microarray experiment data format'
'MAGE-ML' SubClassOf 'is format of' some 'Processed microarray data'
http://edamontology.org/data_1685
EMBOSS supermatcher error file
'EMBOSS supermatcher error file' SubClassOf 'Obsolete concept (EDAM)'
'EMBOSS supermatcher error file' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2289
Sequence identifier (nucleic acid)
'Sequence identifier (nucleic acid)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence identifier (nucleic acid)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1684
EMBOSS sites log file
'EMBOSS sites log file' SubClassOf 'Obsolete concept (EDAM)'
'EMBOSS sites log file' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1687
EMBOSS whichdb log file
'EMBOSS whichdb log file' SubClassOf 'Obsolete concept (EDAM)'
'EMBOSS whichdb log file' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2511
Sequence editing (nucleic acid)
'Sequence editing (nucleic acid)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence editing (nucleic acid)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1686
EMBOSS megamerger log file
'EMBOSS megamerger log file' SubClassOf 'Obsolete concept (EDAM)'
'EMBOSS megamerger log file' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2516
Protein sequence visualisation
'Protein sequence visualisation' SubClassOf 'Obsolete concept (EDAM)'
'Protein sequence visualisation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1681
NACCESS log file
'NACCESS log file' SubClassOf 'Obsolete concept (EDAM)'
'NACCESS log file' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1680
STRIDE log file
'STRIDE log file' SubClassOf 'Obsolete concept (EDAM)'
'STRIDE log file' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1683
EMBOSS domainatrix log file
'EMBOSS domainatrix log file' SubClassOf 'Obsolete concept (EDAM)'
'EMBOSS domainatrix log file' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2515
Nucleic acid sequence visualisation
'Nucleic acid sequence visualisation' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid sequence visualisation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1682
EMBOSS wordfinder log file
'EMBOSS wordfinder log file' SubClassOf 'Obsolete concept (EDAM)'
'EMBOSS wordfinder log file' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2288
Sequence identifier (protein)
'Sequence identifier (protein)' SubClassOf 'Obsolete concept (EDAM)'
'Sequence identifier (protein)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2679
Ensembl ID ('Echinops telfairi')
'Ensembl ID ('Echinops telfairi')' SubClassOf 'Obsolete concept (EDAM)'
'Ensembl ID ('Echinops telfairi')' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2678
Ensembl ID ('Dasypus novemcinctus')
'Ensembl ID ('Dasypus novemcinctus')' SubClassOf 'Obsolete concept (EDAM)'
'Ensembl ID ('Dasypus novemcinctus')' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2675
Ensembl ID ('Ciona intestinalis')
'Ensembl ID ('Ciona intestinalis')' SubClassOf 'Obsolete concept (EDAM)'
'Ensembl ID ('Ciona intestinalis')' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2674
Ensembl ID ('Cavia porcellus')
'Ensembl ID ('Cavia porcellus')' SubClassOf 'Obsolete concept (EDAM)'
'Ensembl ID ('Cavia porcellus')' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2677
Ensembl ID ('Danio rerio')
'Ensembl ID ('Danio rerio')' SubClassOf 'Obsolete concept (EDAM)'
'Ensembl ID ('Danio rerio')' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2676
Ensembl ID ('Ciona savignyi')
'Ensembl ID ('Ciona savignyi')' SubClassOf 'Obsolete concept (EDAM)'
'Ensembl ID ('Ciona savignyi')' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2671
Ensembl ID (Homo sapiens)
'Ensembl ID (Homo sapiens)' SubClassOf 'Obsolete concept (EDAM)'
'Ensembl ID (Homo sapiens)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2673
Ensembl ID ('Canis familiaris')
'Ensembl ID ('Canis familiaris')' SubClassOf 'Obsolete concept (EDAM)'
'Ensembl ID ('Canis familiaris')' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2672
Ensembl ID ('Bos taurus')
'Ensembl ID ('Bos taurus')' SubClassOf 'Obsolete concept (EDAM)'
'Ensembl ID ('Bos taurus')' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2680
Ensembl ID ('Erinaceus europaeus')
'Ensembl ID ('Erinaceus europaeus')' SubClassOf 'Obsolete concept (EDAM)'
'Ensembl ID ('Erinaceus europaeus')' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2500
Microarray raw data analysis
'Microarray raw data analysis' SubClassOf 'Obsolete concept (EDAM)'
'Microarray raw data analysis' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2501
Nucleic acid analysis
'Nucleic acid analysis' SubClassOf 'Operation (typed)'
'Nucleic acid analysis' SubClassOf 'Analysis'
http://edamontology.org/data_1696
Drug report
'Drug report' SubClassOf 'has topic' some 'Drugs and target structures'
'Drug report' SubClassOf 'has topic' some 'Small molecules'
http://edamontology.org/operation_2502
Protein analysis
'Protein analysis' SubClassOf 'has topic' some 'Proteins'
'Protein analysis' SubClassOf 'Operation (typed)'
'Protein analysis' SubClassOf 'has topic' some 'Proteomics'
'Protein analysis' SubClassOf 'Analysis'
http://edamontology.org/data_1695
Hit sort order
'Hit sort order' SubClassOf 'Obsolete concept (EDAM)'
'Hit sort order' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2503
Sequence data processing
'Sequence data processing' SubClassOf 'Obsolete concept (EDAM)'
'Sequence data processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1694
Number of output entities
'Number of output entities' SubClassOf 'Obsolete concept (EDAM)'
'Number of output entities' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2504
Structural data processing
'Structural data processing' SubClassOf 'Obsolete concept (EDAM)'
'Structural data processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_1693
Number of iterations
'Number of iterations' SubClassOf 'Obsolete concept (EDAM)'
'Number of iterations' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2505
Text processing
'Text processing' SubClassOf 'Obsolete concept (EDAM)'
'Text processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_3162
MAGE-TAB
'MAGE-TAB' SubClassOf 'Microarray experiment data format'
'MAGE-TAB' SubClassOf 'is format of' some 'Processed microarray data'
http://edamontology.org/data_2689
Ensembl ID ('Myotis lucifugus')
'Ensembl ID ('Myotis lucifugus')' SubClassOf 'Obsolete concept (EDAM)'
'Ensembl ID ('Myotis lucifugus')' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2688
Ensembl ID ('Mus musculus')
'Ensembl ID ('Mus musculus')' SubClassOf 'Obsolete concept (EDAM)'
'Ensembl ID ('Mus musculus')' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2687
Ensembl ID ('Monodelphis domestica')
'Ensembl ID ('Monodelphis domestica')' SubClassOf 'Obsolete concept (EDAM)'
'Ensembl ID ('Monodelphis domestica')' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2686
Ensembl ID ('Macaca mulatta')
'Ensembl ID ('Macaca mulatta')' SubClassOf 'Obsolete concept (EDAM)'
'Ensembl ID ('Macaca mulatta')' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2685
Ensembl ID ('Loxodonta africana')
'Ensembl ID ('Loxodonta africana')' SubClassOf 'Obsolete concept (EDAM)'
'Ensembl ID ('Loxodonta africana')' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2684
Ensembl ID ('Homo sapiens')
'Ensembl ID ('Homo sapiens')' SubClassOf 'Obsolete concept (EDAM)'
'Ensembl ID ('Homo sapiens')' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2683
Ensembl ID ('Gasterosteus aculeatus')
'Ensembl ID ('Gasterosteus aculeatus')' SubClassOf 'Obsolete concept (EDAM)'
'Ensembl ID ('Gasterosteus aculeatus')' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2682
Ensembl ID ('Gallus gallus')
'Ensembl ID ('Gallus gallus')' SubClassOf 'Obsolete concept (EDAM)'
'Ensembl ID ('Gallus gallus')' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2681
Ensembl ID ('Felis catus')
'Ensembl ID ('Felis catus')' SubClassOf 'Obsolete concept (EDAM)'
'Ensembl ID ('Felis catus')' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0224
Query and retrieval
'Query and retrieval' SubClassOf 'has topic' some 'Data search, query and retrieval'
'Query and retrieval' SubClassOf 'has topic' some 'Data management'
http://edamontology.org/operation_0225
Data retrieval (database cross-reference)
'Data retrieval (database cross-reference)' SubClassOf 'Obsolete concept (EDAM)'
'Data retrieval (database cross-reference)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0228
Data index analysis
'Data index analysis' SubClassOf 'Obsolete concept (EDAM)'
'Data index analysis' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0229
Annotation retrieval (sequence)
'Annotation retrieval (sequence)' SubClassOf 'Obsolete concept (EDAM)'
'Annotation retrieval (sequence)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0226
Annotation
'Annotation' SubClassOf 'Analysis'
'Annotation' SubClassOf 'Operation'
http://edamontology.org/operation_0227
Indexing
'Indexing' SubClassOf 'Utility operation'
'Indexing' SubClassOf 'Operation'
http://edamontology.org/operation_2123
Small molecule data processing
'Small molecule data processing' SubClassOf 'Obsolete concept (EDAM)'
'Small molecule data processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2122
Sequence alignment file processing
'Sequence alignment file processing' SubClassOf 'Obsolete concept (EDAM)'
'Sequence alignment file processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2120
Listfile processing
'Listfile processing' SubClassOf 'Obsolete concept (EDAM)'
'Listfile processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_1768
Nucleic acid folding family identification
'Nucleic acid folding family identification' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid folding family identification' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/correlation_3465
Correlation
'Correlation' SubClassOf 'Analysis'
'Correlation' SubClassOf 'has topic' some 'Proteomics'
http://edamontology.org/data_2252
XSLT stylesheet
'XSLT stylesheet' SubClassOf 'Obsolete concept (EDAM)'
'XSLT stylesheet' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_2521
Map data processing
'Map data processing' SubClassOf 'Obsolete concept (EDAM)'
'Map data processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0238
Sequence motif discovery
'Sequence motif discovery' SubClassOf 'Sequence motif processing'
http://edamontology.org/operation_0239
Sequence signature recognition
'Sequence signature recognition' SubClassOf 'Sequence motif processing'
http://edamontology.org/operation_2519
Structure processing (nucleic acid)
'Structure processing (nucleic acid)' SubClassOf 'Obsolete concept (EDAM)'
'Structure processing (nucleic acid)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2251
Relax-NG schema
'Relax-NG schema' SubClassOf 'Obsolete concept (EDAM)'
'Relax-NG schema' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2250
XML Schema
'XML Schema' SubClassOf 'Obsolete concept (EDAM)'
'XML Schema' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0248
Residue interaction calculation
'Residue interaction calculation' SubClassOf 'has output' some 'Protein residue interactions'
http://edamontology.org/operation_0241
Transcription regulatory sequence analysis
'Transcription regulatory sequence analysis' SubClassOf 'Obsolete concept (EDAM)'
'Transcription regulatory sequence analysis' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0786
Arabidopsis
'Arabidopsis' SubClassOf 'Obsolete concept (EDAM)'
'Arabidopsis' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0240
Sequence motif comparison
'Sequence motif comparison' SubClassOf 'Sequence motif processing'
http://edamontology.org/topic_0787
Rice
'Rice' SubClassOf 'Obsolete concept (EDAM)'
'Rice' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0255
Feature table query
'Feature table query' SubClassOf 'Obsolete concept (EDAM)'
'Feature table query' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0257
Data retrieval (sequence alignment)
'Data retrieval (sequence alignment)' SubClassOf 'Obsolete concept (EDAM)'
'Data retrieval (sequence alignment)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0796
Genetic mapping and linkage
'Genetic mapping and linkage' SubClassOf 'Obsolete concept (EDAM)'
'Genetic mapping and linkage' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0254
Data retrieval (feature table)
'Data retrieval (feature table)' SubClassOf 'Obsolete concept (EDAM)'
'Data retrieval (feature table)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_0798
Mobile genetic elements
'Mobile genetic elements' SubClassOf 'Nucleic acid sites, features and motifs'
'Mobile genetic elements' SubClassOf 'Genetics'
'Mobile genetic elements' SubClassOf 'Gene structure'
http://edamontology.org/operation_0250
Protein property calculation
'Protein property calculation' SubClassOf 'has output' some 'Protein property'
'Protein property calculation' SubClassOf 'has topic' some 'Protein properties'
http://edamontology.org/operation_0267
Protein secondary structure prediction
'Protein secondary structure prediction' SubClassOf 'has topic' some 'Protein structure prediction'
http://edamontology.org/operation_2575
Protein binding site prediction
'Protein binding site prediction' SubClassOf 'Protein feature detection'
http://edamontology.org/operation_0261
Nucleic acid property processing
'Nucleic acid property processing' SubClassOf 'Obsolete concept (EDAM)'
'Nucleic acid property processing' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2691
Ensembl ID ('Oryctolagus cuniculus')
'Ensembl ID ('Oryctolagus cuniculus')' SubClassOf 'Obsolete concept (EDAM)'
'Ensembl ID ('Oryctolagus cuniculus')' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2690
Ensembl ID ("Ornithorhynchus anatinus")
'Ensembl ID ("Ornithorhynchus anatinus")' SubClassOf 'Obsolete concept (EDAM)'
'Ensembl ID ("Ornithorhynchus anatinus")' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2692
Ensembl ID ('Oryzias latipes')
'Ensembl ID ('Oryzias latipes')' SubClassOf 'Obsolete concept (EDAM)'
'Ensembl ID ('Oryzias latipes')' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2693
Ensembl ID ('Otolemur garnettii')
'Ensembl ID ('Otolemur garnettii')' SubClassOf 'Obsolete concept (EDAM)'
'Ensembl ID ('Otolemur garnettii')' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2694
Ensembl ID ('Pan troglodytes')
'Ensembl ID ('Pan troglodytes')' SubClassOf 'Obsolete concept (EDAM)'
'Ensembl ID ('Pan troglodytes')' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2695
Ensembl ID ('Rattus norvegicus')
'Ensembl ID ('Rattus norvegicus')' SubClassOf 'Obsolete concept (EDAM)'
'Ensembl ID ('Rattus norvegicus')' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2696
Ensembl ID ('Spermophilus tridecemlineatus')
'Ensembl ID ('Spermophilus tridecemlineatus')' SubClassOf 'Obsolete concept (EDAM)'
'Ensembl ID ('Spermophilus tridecemlineatus')' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2697
Ensembl ID ('Takifugu rubripes')
'Ensembl ID ('Takifugu rubripes')' SubClassOf 'Obsolete concept (EDAM)'
'Ensembl ID ('Takifugu rubripes')' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2698
Ensembl ID ('Tupaia belangeri')
'Ensembl ID ('Tupaia belangeri')' SubClassOf 'Obsolete concept (EDAM)'
'Ensembl ID ('Tupaia belangeri')' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/data_2699
Ensembl ID ('Xenopus tropicalis')
'Ensembl ID ('Xenopus tropicalis')' SubClassOf 'Obsolete concept (EDAM)'
'Ensembl ID ('Xenopus tropicalis')' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0278
RNA secondary structure prediction
'RNA secondary structure prediction' SubClassOf 'has topic' some 'Nucleic acid structure prediction'
http://edamontology.org/operation_0279
Nucleic acid folding prediction
'Nucleic acid folding prediction' SubClassOf 'has topic' some 'Nucleic acid structure prediction'
http://edamontology.org/data_2296
Gene name (AceView)
'Gene name (AceView)' SubClassOf 'Obsolete concept (EDAM)'
'Gene name (AceView)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0274
Protein-protein interaction prediction (from protein sequence)
'Protein-protein interaction prediction (from protein sequence)' SubClassOf 'Protein function prediction'
'Protein-protein interaction prediction (from protein sequence)' SubClassOf 'Protein-protein interaction prediction'
'Protein-protein interaction prediction (from protein sequence)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/operation_0275
Protein-protein interaction prediction (from protein structure)
'Protein-protein interaction prediction (from protein structure)' SubClassOf 'Protein-protein interaction prediction'
'Protein-protein interaction prediction (from protein structure)' SubClassOf 'Protein structure analysis'
'Protein-protein interaction prediction (from protein structure)' SubClassOf 'Protein feature detection'
'Protein-protein interaction prediction (from protein structure)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/format_2015
Sequence-profile alignment (HMM) format
'Sequence-profile alignment (HMM) format' SubClassOf 'Obsolete concept (EDAM)'
'Sequence-profile alignment (HMM) format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_1456
Protein membrane regions
'Protein membrane regions' SubClassOf 'Protein domains and folds'
'Protein membrane regions' SubClassOf 'Protein domains'
'Protein membrane regions' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass
http://edamontology.org/topic_3697
Microbial ecology
'Microbial ecology' SubClassOf 'Ecology'
'Microbial ecology' SubClassOf 'Microbiology'
http://edamontology.org/format_3665
K-mer countgraph
'K-mer countgraph' SubClassOf 'Graph format'
'K-mer countgraph' SubClassOf 'Binary format'
http://edamontology.org/format_3652
dta
'dta' SubClassOf 'Mass spectrometry data format'
http://edamontology.org/format_3653
pkl
'pkl' SubClassOf 'Mass spectrometry data format'
http://edamontology.org/format_3650
netCDF
'netCDF' SubClassOf 'Mass spectrometry data format'
http://edamontology.org/format_3651
MGF
'MGF' SubClassOf 'Mass spectrometry data format'
http://edamontology.org/format_3657
GPML
'GPML' SubClassOf 'Biological pathway or network format'
'GPML' SubClassOf 'XML'
http://edamontology.org/format_3654
mzXML
'mzXML' SubClassOf 'Mass spectrometry data format'
http://edamontology.org/format_3655
pepXML
'pepXML' SubClassOf 'Mass spectrometry data format'
'pepXML' SubClassOf 'XML'
http://edamontology.org/format_3688
SBtab
'SBtab' SubClassOf 'Textual format'
'SBtab' SubClassOf 'Biological pathway or network format'
http://edamontology.org/format_3687
ISA-TAB
'ISA-TAB' SubClassOf 'Experiment annotation format'
'ISA-TAB' SubClassOf 'Textual format'
'ISA-TAB' SubClassOf 'Gene expression report format'
http://edamontology.org/format_3689
BCML
'BCML' SubClassOf 'Biological pathway or network format'
'BCML' SubClassOf 'XML'
http://edamontology.org/format_3684
PRIDE XML
'PRIDE XML' SubClassOf 'Experiment annotation format'
'PRIDE XML' SubClassOf 'Mass spectrometry data format'
'PRIDE XML' SubClassOf 'XML'
http://edamontology.org/format_3683
qcML
'qcML' SubClassOf 'Mass spectrometry data format'
'qcML' SubClassOf 'Experiment annotation format'
'qcML' SubClassOf 'XML'
http://edamontology.org/format_3686
COMBINE OMEX
'COMBINE OMEX' SubClassOf 'Biological pathway or network format'
'COMBINE OMEX' SubClassOf 'Binary format'
'COMBINE OMEX' SubClassOf 'Experiment annotation format'
http://edamontology.org/format_3685
SED-ML
'SED-ML' SubClassOf 'XML'
'SED-ML' SubClassOf 'Experiment annotation format'
http://edamontology.org/format_3682
imzML
'imzML' SubClassOf 'Mass spectrometry data format'
'imzML' SubClassOf 'Binary format'
'imzML' SubClassOf 'XML'
http://edamontology.org/format_3681
mzTab
'mzTab' SubClassOf 'Mass spectrometry data format'
'mzTab' SubClassOf 'Textual format'
http://edamontology.org/topic_3656
Immunoprecipitation experiment
'Immunoprecipitation experiment' SubClassOf 'Laboratory techniques'
http://edamontology.org/topic_3676
Exome sequencing
'Exome sequencing' SubClassOf 'Sequencing'
http://edamontology.org/topic_3679
Animal study
'Animal study' SubClassOf 'Experimental design and studies'
'Animal study' SubClassOf 'Laboratory animal science'
http://edamontology.org/topic_3678
Experimental design and studies
'Experimental design and studies' SubClassOf 'Topic'
http://edamontology.org/format_3699
VDB
'VDB' SubClassOf 'Binary format'
http://edamontology.org/format_3698
SRA format
'SRA format' SubClassOf 'Binary format'
http://edamontology.org/topic_3673
Whole genome sequencing
'Whole genome sequencing' SubClassOf 'Sequencing'
http://edamontology.org/topic_3674
Methylated DNA immunoprecipitation
'Methylated DNA immunoprecipitation' SubClassOf 'Immunoprecipitation experiment'
http://edamontology.org/format_3693
AGP
'AGP' SubClassOf 'Textual format'
'AGP' SubClassOf 'Sequence assembly format'
http://edamontology.org/format_3692
SBGN-ML
'SBGN-ML' SubClassOf 'XML'
'SBGN-ML' SubClassOf 'Biological pathway or network format'
http://edamontology.org/format_3691
BEL
'BEL' SubClassOf 'Textual format'
http://edamontology.org/format_3690
BDML
'BDML' SubClassOf 'XML'
http://edamontology.org/format_3696
PS
'PS' SubClassOf 'Textual format'
http://edamontology.org/format_3602
pgm
'pgm' SubClassOf 'Binary format'
'pgm' SubClassOf 'Image format'
http://edamontology.org/format_3601
pbm
'pbm' SubClassOf 'Binary format'
'pbm' SubClassOf 'Image format'
http://edamontology.org/format_3600
rgb
'rgb' SubClassOf 'Image format'
'rgb' SubClassOf 'Binary format'
http://edamontology.org/format_3606
Sequence quality report format (text)
'Sequence quality report format (text)' SubClassOf 'Format (typed)'
'Sequence quality report format (text)' SubClassOf 'Textual format'
'Sequence quality report format (text)' SubClassOf 'is format of' some 'Report'
http://edamontology.org/format_3605
rast
'rast' SubClassOf 'Image format'
'rast' SubClassOf 'Binary format'
http://edamontology.org/format_3604
SVG
'SVG' SubClassOf 'Image format'
'SVG' SubClassOf 'XML'
http://edamontology.org/format_3603
PNG
'PNG' SubClassOf 'Binary format'
'PNG' SubClassOf 'Image format'
http://edamontology.org/format_3609
qualillumina
'qualillumina' SubClassOf 'qual'
'qualillumina' SubClassOf 'FASTQ-illumina'
http://edamontology.org/format_3607
qual
'qual' SubClassOf 'FASTQ-like format (text)'
'qual' SubClassOf 'Sequence quality report format (text)'
http://edamontology.org/format_3608
qualsolexa
'qualsolexa' SubClassOf 'qual'
'qualsolexa' SubClassOf 'FASTQ-solexa'
http://edamontology.org/format_3615
bgzip
'bgzip' SubClassOf 'Image format'
'bgzip' SubClassOf 'Binary format'
http://edamontology.org/format_3614
ENCODE broad peak format
'ENCODE broad peak format ' SubClassOf 'ENCODE peak format'
http://edamontology.org/format_3617
Graph format
'Graph format' SubClassOf 'Format (typed)'
http://edamontology.org/format_3616
tabix
'tabix' SubClassOf 'Image format'
'tabix' SubClassOf 'Binary format'
http://edamontology.org/format_3611
qual454
'qual454' SubClassOf 'qual'
http://edamontology.org/format_3610
qualsolid
'qualsolid' SubClassOf 'qual'
http://edamontology.org/format_3613
ENCODE narrow peak format
'ENCODE narrow peak format' SubClassOf 'ENCODE peak format'
http://edamontology.org/format_3612
ENCODE peak format
'ENCODE peak format' SubClassOf 'bed6'
http://edamontology.org/format_3618
xgmml
'xgmml' SubClassOf 'Graph format'
http://edamontology.org/format_3619
sif
'sif' SubClassOf 'Biological pathway or network format'
http://edamontology.org/format_3626
MAT
'MAT' SubClassOf 'is format of' some '3D-1D scoring matrix'
'MAT' SubClassOf 'Matrix format'
http://edamontology.org/format_3624
snpeffdb
'snpeffdb' SubClassOf 'Index format'
http://edamontology.org/format_3623
Index format
'Index format' SubClassOf 'Binary format'
'Index format' SubClassOf 'is format of' some 'Data index'
'Index format' SubClassOf 'Format (typed)'
http://edamontology.org/format_3622
GeminiSQLite
'GeminiSQLite' SubClassOf 'Binary format'
http://edamontology.org/format_3621
SQLite
'SQLite' SubClassOf 'Binary format'
http://edamontology.org/format_3620
xlsx
'xlsx' SubClassOf 'Binary format'
'xlsx' SubClassOf 'Document format'
http://edamontology.org/format_3750
YAML
'YAML' SubClassOf 'Format'
http://edamontology.org/format_3702
MSF
'MSF' SubClassOf 'Mass spectrometry data format'
http://edamontology.org/format_3700
Tabix index file format
'Tabix index file format' SubClassOf 'Data index format'
'Tabix index file format' SubClassOf 'is format of' some 'Data index'
http://edamontology.org/format_3701
Sequin format
'Sequin format' SubClassOf 'Sequence feature table format (text)'
http://edamontology.org/format_3709
GCT/Res format
'GCT/Res format' SubClassOf 'Textual format'
'GCT/Res format' SubClassOf 'Gene expression report format'
http://edamontology.org/format_3708
ABCD format
'ABCD format' SubClassOf 'is format of' some 'Biodiversity report'
'ABCD format' SubClassOf 'Biodiversity data format'
http://edamontology.org/format_3706
Biodiversity data format
'Biodiversity data format' SubClassOf 'is format of' some 'Biodiversity report'
'Biodiversity data format' SubClassOf 'Format (typed)'
http://edamontology.org/operation_3465
Correlation
'Correlation' SubClassOf 'Operation'
'Correlation' SubClassOf 'has topic' some 'Proteomics'
http://edamontology.org/format_3749
JSON-LD
'JSON-LD' SubClassOf 'JSON'
'JSON-LD' SubClassOf 'Linked data format'
'JSON-LD' SubClassOf 'RDF format'
http://edamontology.org/format_3748
Linked data format
'Linked data format' SubClassOf 'Format (typed)'
http://edamontology.org/format_3747
protXML
'protXML' SubClassOf 'Mass spectrometry data format'
'protXML' SubClassOf 'XML'
http://edamontology.org/format_3746
BIOM format
'BIOM format' SubClassOf 'Biodiversity data format'
'BIOM format' SubClassOf 'Textual format'
http://edamontology.org/format_3710
WIFF format
'WIFF format' SubClassOf 'Mass spectrometry data format'
'WIFF format' SubClassOf 'Binary format'
http://edamontology.org/format_3712
Thermo RAW
'Thermo RAW' SubClassOf 'Binary format'
'Thermo RAW' SubClassOf 'Mass spectrometry data format'
http://edamontology.org/format_3711
X!Tandem XML
'X!Tandem XML' SubClassOf 'Mass spectrometry data format'
'X!Tandem XML' SubClassOf 'Binary format'
'X!Tandem XML' SubClassOf 'Textual format'
http://edamontology.org/format_3714
MaxQuant APL peaklist format
'MaxQuant APL peaklist format' SubClassOf 'Mass spectrometry data format'
'MaxQuant APL peaklist format' SubClassOf 'Textual format'
http://edamontology.org/format_3713
Mascot .dat file
'Mascot .dat file' SubClassOf 'Textual format'
'Mascot .dat file' SubClassOf 'Mass spectrometry data format'
http://edamontology.org/format_3727
OME-TIFF
'OME-TIFF' SubClassOf 'Binary format'
'OME-TIFF' SubClassOf 'Image format'
http://edamontology.org/format_3726
PMML
'PMML' SubClassOf 'XML'
http://edamontology.org/format_3725
SBOL
'SBOL' SubClassOf 'XML'
http://edamontology.org/format_3728
LocARNA PP
'LocARNA PP' SubClassOf 'Textual format'
http://edamontology.org/format_3729
dbGaP format
'dbGaP format' SubClassOf 'Textual format'
http://edamontology.org/data_3568
Gene Expression Atlas Experiment ID
'Gene Expression Atlas Experiment ID' SubClassOf 'Experiment annotation ID'
http://edamontology.org/data_3567
Reference sample report
'Reference sample report' SubClassOf 'Report'
http://edamontology.org/data_3671
Text
'Text' SubClassOf 'Parameter'
'Text' SubClassOf 'Article data'
http://edamontology.org/data_3670
Online course
'Online course' SubClassOf 'Training material'
http://edamontology.org/data_3667
Disease identifier
'Disease identifier' SubClassOf 'is identifier of' some 'Disease report'
'Disease identifier' SubClassOf 'Accession'
'Disease identifier' SubClassOf 'Identifier (typed)'
http://edamontology.org/data_3669
Training material
'Training material' SubClassOf 'Data'
http://edamontology.org/data_3668
Disease name
'Disease name' SubClassOf 'Name'
'Disease name' SubClassOf 'Disease identifier'
http://edamontology.org/data_3724
Cultivation parameter
'Cultivation parameter' SubClassOf 'Experimental measurement'
http://edamontology.org/data_3723
Morphology parameter
'Morphology parameter' SubClassOf 'Experimental measurement'
http://edamontology.org/data_3722
Physiology parameter
'Physiology parameter' SubClassOf 'Experimental measurement'
http://edamontology.org/data_3721
Isolation source
'Isolation source' SubClassOf 'Isolation report'
http://edamontology.org/data_3720
Geographic location
'Geographic location' SubClassOf 'Isolation report'
http://edamontology.org/data_3735
Run number
'Run number' SubClassOf 'Sequencing metadata name'
http://edamontology.org/data_3734
Lane identifier
'Lane identifier' SubClassOf 'Sequencing metadata name'
http://edamontology.org/data_3737
Alpha diversity data
'Alpha diversity data' SubClassOf 'Biodiversity report'
http://edamontology.org/data_3736
Ecological data
'Ecological data' SubClassOf 'Data'
http://edamontology.org/data_3739
Gamma diversity data
'Gamma diversity data' SubClassOf 'Biodiversity report'
http://edamontology.org/data_3738
Beta diversity data
'Beta diversity data' SubClassOf 'Biodiversity report'
http://edamontology.org/data_3733
Flow cell identifier
'Flow cell identifier' SubClassOf 'Sequencing metadata name'
http://edamontology.org/data_3732
Sequencing metadata name
'Sequencing metadata name' SubClassOf 'Name'
http://edamontology.org/data_3707
Biodiversity report
'Biodiversity report' SubClassOf 'Ecological data'
'Biodiversity report' SubClassOf 'Report'
http://edamontology.org/data_3717
Isolation report
'Isolation report' SubClassOf 'Report'
http://edamontology.org/data_3716
Biosafety report
'Biosafety report' SubClassOf 'Report'
http://edamontology.org/data_3719
Biosafety classification
'Biosafety classification' SubClassOf 'Biosafety report'
http://edamontology.org/data_3718
Pathogenicity report
'Pathogenicity report' SubClassOf 'Biosafety report'
http://edamontology.org/format_3599
xpm
'xpm' SubClassOf 'Image format'
'xpm' SubClassOf 'Binary format'
http://edamontology.org/format_3595
pcx
'pcx' SubClassOf 'Binary format'
'pcx' SubClassOf 'Image format'
http://edamontology.org/format_3596
ppm
'ppm' SubClassOf 'Image format'
'ppm' SubClassOf 'Binary format'
http://edamontology.org/format_3597
psd
'psd' SubClassOf 'Binary format'
'psd' SubClassOf 'Image format'
http://edamontology.org/format_3598
xbm
'xbm' SubClassOf 'Binary format'
'xbm' SubClassOf 'Image format'
http://edamontology.org/format_3591
tiff
'tiff' SubClassOf 'Image format'
'tiff' SubClassOf 'Binary format'
http://edamontology.org/format_3592
bmp
'bmp' SubClassOf 'Binary format'
'bmp' SubClassOf 'Image format'
http://edamontology.org/format_3593
im
'im' SubClassOf 'Binary format'
'im' SubClassOf 'Image format'
http://edamontology.org/format_3594
pcd
'pcd' SubClassOf 'Binary format'
'pcd' SubClassOf 'Image format'
http://edamontology.org/format_3581
arff
'arff' SubClassOf 'Textual format'
http://edamontology.org/format_3580
rcc
'rcc' SubClassOf 'Gene expression report format'
'rcc' SubClassOf 'Textual format'
http://edamontology.org/format_3583
bedgraph
'bedgraph' SubClassOf 'Sequence annotation track format'
'bedgraph' SubClassOf 'Textual format'
http://edamontology.org/format_3582
afg
'afg' SubClassOf 'Sequence assembly format (text)'
'afg' SubClassOf 'Textual format'
http://edamontology.org/format_3585
bed6
'bed6' SubClassOf 'bedstrict'
http://edamontology.org/format_3584
bedstrict
'bedstrict' SubClassOf 'BED'
http://edamontology.org/format_3587
chrominfo
'chrominfo' SubClassOf 'Textual format'
'chrominfo' SubClassOf 'BED'
http://edamontology.org/format_3586
bed12
'bed12' SubClassOf 'bedstrict'
http://edamontology.org/format_3589
csfasta
'csfasta' SubClassOf 'Alignment format (text)'
'csfasta' SubClassOf 'FASTA-like (text)'
http://edamontology.org/format_3588
customtrack
'customtrack' SubClassOf 'Sequence annotation track format'
'customtrack' SubClassOf 'Textual format'
http://edamontology.org/topic_3569
Applied mathematics
'Applied mathematics' SubClassOf 'Mathematics'
http://edamontology.org/format_3590
hdf5
'hdf5' SubClassOf 'Binary format'
http://edamontology.org/format_3579
JPG
'JPG' SubClassOf 'Image format'
'JPG' SubClassOf 'Binary format'
http://edamontology.org/format_3578
IDAT
'IDAT' SubClassOf 'Gene expression report format'
'IDAT' SubClassOf 'is format of' some 'Raw microarray data'
'IDAT' SubClassOf 'Binary format'
http://edamontology.org/topic_3557
Protein interaction experiment
'Protein interaction experiment' SubClassOf 'Laboratory techniques'
http://edamontology.org/topic_3574
Human genetics
'Human genetics' SubClassOf 'Genetics'
http://edamontology.org/topic_3573
Freshwater biology
'Freshwater biology' SubClassOf 'Biology'
http://edamontology.org/topic_3576
Medical biotechnology
'Medical biotechnology' SubClassOf 'Biotechnology'
http://edamontology.org/topic_3575
Tropical medicine
'Tropical medicine' SubClassOf 'Medicine'
http://edamontology.org/topic_3570
Pure mathematics
'Pure mathematics' SubClassOf 'Mathematics'
http://edamontology.org/topic_3572
Data quality management
'Data quality management' SubClassOf 'Data management'
http://edamontology.org/topic_3571
Data governance
'Data governance' SubClassOf 'Data management'
http://edamontology.org/topic_3577
Personalized medicine
'Personalized medicine' SubClassOf 'Medicine'
http://edamontology.org/data_3743
Ordination plot
'Ordination plot' SubClassOf 'Plot'
'Ordination plot' SubClassOf 'Protein property'
http://edamontology.org/operation_3703
Reference identification
'Reference identification' SubClassOf 'Genetic variation analysis'
http://edamontology.org/operation_3705
Isotope-coded protein label
'Isotope-coded protein label' SubClassOf 'Labeled quantification'
http://edamontology.org/operation_3704
Ion counting
'Ion counting' SubClassOf 'Label-free quantification'
http://edamontology.org/operation_3741
Differential protein expression analysis
'Differential protein expression analysis' SubClassOf 'Protein comparison'
'Differential protein expression analysis' SubClassOf 'Differential expression analysis'
http://edamontology.org/operation_3744
Multiple sample visualisation
'Multiple sample visualisation' SubClassOf 'Visualisation'
http://edamontology.org/operation_3745
Ancestral reconstruction
'Ancestral reconstruction' SubClassOf 'Phylogenetic tree analysis'
http://edamontology.org/operation_3742
Differential expression analysis
'Differential expression analysis' SubClassOf 'Comparison'
http://edamontology.org/operation_3730
Cross-assembly
'Cross-assembly' SubClassOf 'Sequence assembly'
http://edamontology.org/operation_3731
Sample comparison
'Sample comparison' SubClassOf 'Comparison'
http://edamontology.org/operation_3715
Metabolic labeling
'Metabolic labeling' SubClassOf 'Labeled quantification'
http://edamontology.org/operation_3642
Dimethyl
'Dimethyl' SubClassOf 'Labeled quantification'
http://edamontology.org/operation_3641
TMT-tag
'TMT-tag' SubClassOf 'Labeled quantification'
http://edamontology.org/operation_3640
18O labeling
'18O labeling' SubClassOf 'Labeled quantification'
http://edamontology.org/operation_3646
Peptide database search
'Peptide database search' SubClassOf 'Peptide identification'
'Peptide database search' SubClassOf 'Database search'
http://edamontology.org/operation_3645
PTM identification
'PTM identification' SubClassOf 'Peptide identification'
http://edamontology.org/operation_3644
de Novo sequencing
'de Novo sequencing' SubClassOf 'Sequence generation (protein)'
'de Novo sequencing' SubClassOf 'Peptide identification'
http://edamontology.org/operation_3643
Tag-based peptide identification
'Tag-based peptide identification' SubClassOf 'Peptide identification'
http://edamontology.org/operation_3649
Target-Decoy
'Target-Decoy' SubClassOf 'Validation of peptide-spectrum matches'
http://edamontology.org/operation_3648
Validation of peptide-spectrum matches
'Validation of peptide-spectrum matches' SubClassOf 'Peptide database search'
'Validation of peptide-spectrum matches' SubClassOf 'Validation'
http://edamontology.org/operation_3647
Blind peptide database search
'Blind peptide database search' SubClassOf 'Peptide database search'
http://edamontology.org/operation_3629
Deisotoping
'Deisotoping' SubClassOf 'has input' some 'Mass spectrometry spectra'
'Deisotoping' SubClassOf 'Spectral analysis'
http://edamontology.org/operation_3631
Peptide identification
'Peptide identification' SubClassOf 'has input' some 'Mass spectrometry spectra'
'Peptide identification' SubClassOf 'Spectral analysis'
http://edamontology.org/operation_3630
Quantification
'Quantification' SubClassOf 'has input' some 'Mass spectrometry spectra'
'Quantification' SubClassOf 'Spectral analysis'
http://edamontology.org/operation_3633
Retention times prediction
'Retention times prediction' SubClassOf 'Calculation'
http://edamontology.org/operation_3632
Isotopic distributions calculation
'Isotopic distributions calculation' SubClassOf 'Calculation'
'Isotopic distributions calculation' SubClassOf 'has input' some 'Mass spectrometry spectra'
'Isotopic distributions calculation' SubClassOf 'has topic' some 'Proteomics'
http://edamontology.org/operation_3635
Labeled quantification
'Labeled quantification' SubClassOf 'Quantification'
http://edamontology.org/operation_3634
Label-free quantification
'Label-free quantification' SubClassOf 'Quantification'
http://edamontology.org/operation_3637
Spectral counting
'Spectral counting' SubClassOf 'Label-free quantification'
http://edamontology.org/operation_3636
MRM/SRM
'MRM/SRM' SubClassOf 'Quantification'
http://edamontology.org/operation_3639
iTRAQ
'iTRAQ' SubClassOf 'Labeled quantification'
http://edamontology.org/operation_3638
SILAC
'SILAC' SubClassOf 'Labeled quantification'
http://edamontology.org/operation_3664
Statistical modelling
'Statistical modelling' SubClassOf 'Statistical calculation'
http://edamontology.org/operation_3663
Homology-based gene prediction
'Homology-based gene prediction' SubClassOf 'Gene prediction'
http://edamontology.org/operation_3662
Ab-initio gene prediction
'Ab-initio gene prediction' SubClassOf 'Gene prediction'
http://edamontology.org/operation_3661
SNP annotation
'SNP annotation' SubClassOf 'Sequence annotation'
http://edamontology.org/operation_3660
Metabolic network modelling
'Metabolic network modelling' SubClassOf 'Network simulation'
'Metabolic network modelling' SubClassOf 'has topic' some 'Systems biology'
http://edamontology.org/operation_3666
Molecular surface comparison
'Molecular surface comparison' SubClassOf 'Molecular surface analysis'
'Molecular surface comparison' SubClassOf 'Structure comparison'
http://edamontology.org/operation_3659
Regression analysis
'Regression analysis' SubClassOf 'Statistical calculation'
http://edamontology.org/operation_3658
Statistical inference
'Statistical inference' SubClassOf 'Statistical calculation'
http://edamontology.org/operation_3627
Mass spectra calibration
'Mass spectra calibration' SubClassOf 'Spectral analysis'
'Mass spectra calibration' SubClassOf 'has input' some 'Mass spectrometry spectra'
http://edamontology.org/operation_3628
Chromatographic alignment
'Chromatographic alignment' SubClassOf 'Spectral analysis'
'Chromatographic alignment' SubClassOf 'has input' some 'Mass spectrometry spectra'
http://edamontology.org/operation_3625
Relationship inference
'Relationship inference' SubClassOf 'has output' some 'Article data'
'Relationship inference' SubClassOf 'has input' some 'Article'
'Relationship inference' SubClassOf 'Text mining'
'Relationship inference' SubClassOf 'has topic' some 'Literature and reference'
http://edamontology.org/operation_3680
RNA-Seq analysis
'RNA-Seq analysis' SubClassOf 'Nucleic acid sequence analysis'
http://edamontology.org/operation_3677
Differential binding analysis
'Differential binding analysis' SubClassOf 'Nucleic acid sequence analysis'
http://edamontology.org/operation_3675
Variant filtering
'Variant filtering' SubClassOf 'Sequencing quality control'
'Variant filtering' SubClassOf 'Nucleic acid sequence analysis'
http://edamontology.org/operation_3672
Gene functional annotation
'Gene functional annotation' SubClassOf 'Sequence annotation'
http://edamontology.org/operation_3694
Mass spectrum visualisation
'Mass spectrum visualisation' SubClassOf 'Visualisation'
http://edamontology.org/operation_3695
Filtering
'Filtering' SubClassOf 'Data handling'
http://edamontology.org/correlation_3465
Correlation
'Correlation' SubClassOf 'Analysis'
'Correlation' SubClassOf 'has topic' some 'Proteomics'